BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471083
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09810.1 | Symbols: ECT11 | evolutionarily conserved C-termi... 2470 0.0
> AT1G09810.1 | Symbols: ECT11 | evolutionarily conserved C-terminal
region 11 | chr1:3180936-3184224 REVERSE LENGTH=1775
Length=1775
Score = 2470 bits (1337), Expect = 0.0
Identities = 1641/1783 (92%), Gaps = 39/1783 (2%)
Strand=Plus/Plus
Query 1 TTTTTCTGTGAGGGTTCGGTTTGGTCGTCGTCGCAACT-TGCCACTTCTG--TTCCAAAG 57
|||||||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 4 TTTTTCTGTGAGGGTTCGGTTTGGTCGTCGTCGCAACTCCCCCACTTGTGAATTCCAAAG 63
Query 58 TATACATAAACATAACTCAAACACATCCTCTTCAAGCGGTTTCCCCTGTTTGGTTTAACG 117
||| || |||| || ||||| |||||||||||||||||||||||||||||| |||
Sbjct 64 --TAC----ACTTAACACATACACAACCTCTTCAAGCGGTTTCCCCTGTTTGGTTTTACG 117
Query 118 GCGGCTCTAAACCCGTTTTCTCAGTGTATCTTGATTATTGGTAATGGCCACTGAACAGAA 177
|||||||||||||||||||||||||||||||| | |||| |||||||||||||| ||||
Sbjct 118 GCGGCTCTAAACCCGTTTTCTCAGTGTATCTTCAAAATTGATAATGGCCACTGAAAAGAA 177
Query 178 CACTCTGGATTCTGAGGCTACTTTTGCGCAAACAGTACCAGCTCCAGATCCTACAACAAA 237
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 178 TACTCTGGATTCTGAGGCTACTTTTGCGCAAACAGTACCAGCTCTTGATTCTACAACAAA 237
Query 238 GAAACAGGATGAGTCTCCTCCAACGAGTACCTCGCCTGTTACTGTCACCCCCACTGCAT- 296
||||||||||||||||||||||| ||||||| || || |||||||||| | ||| |
Sbjct 238 GAAACAGGATGAGTCTCCTCCAAAGAGTACCCCGTCTCTTACTGTCACTGCTTGTGC-TA 296
Query 297 GTAGATCTAATGTGGTCTCTACTCAGCCAGATAACAATGGCCAGGCACATGCTGCAGATC 356
| ||||| |||| || ||| |||||||| || |||||||||| |||||| || |||||
Sbjct 297 ATGGATCTGATGTAGTATCTTCTCAGCCAAATGACAATGGCCAAGCACATACTACAGATT 356
Query 357 TTCTAAAGGGAAGTTACCGTGACAAAAACAGCTCATATGTCTATTCTGCTTCGACTTTGC 416
||| |||||||| | |||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 357 TTCGAAAGGGAAATCACCGTGACAAAAACAGCTCAGATGTCTATGCTGATTCGACTTTGC 416
Query 417 GTGGAGATCGAGCAAAAACAAACAATTGTTGGTCTCAAACTTCTTTTTCGGCTCCTAAGC 476
||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 417 GTGGAGATCGACCAAAAGGAAGCAATTGTTTGTCTCAAACTTCTTTTTCGGCTCCTAAGC 476
Query 477 CTCCTGGAAATTTCAATGGTGCTGGTAGACTTCCTCCCAATACACAAGCACATGCATTCA 536
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTCTTGGAAATTTCAATGGTGCTGGTAGACTTCCTCCCAATACACAAGCACATGCATTCA 536
Query 537 GACCACCATTTAAGGGAAAGGAAGCCGCAGGACAGTACTTA-CAATTCTCCAATCAAAAG 595
|||||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||
Sbjct 537 GACCACCATTTAAGGGAAAGGAAGCCGCAGGACAGTTCTTAACA-TTCTCCAATCAGAAG 595
Query 596 AGAAGCTGTGTCCCATATTCTGGTTACATTAATGGAAACTCAAATAATGGTTTCTGGGAT 655
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ACAAGCTGTGTCCCATATTCTGGTTACATTAATGGAAACTCAAATAATGGTTTCTGGGAT 655
Query 656 CAAAGAGATCATAATAAGAAACCTGAGAGAAATGGAGAATCTGACTACTTGGTTGAATTG 715
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 656 CAAAGGGATCATAATAAGAAACCTGAGAGAAATGGAGAGTCTGACTACTTGGTTGAATTG 715
Query 716 AAATGTGGTCCGAGAGCCAATGCAAAGACTCGTCCTCCTTCTGAGTCATCATCACCCAAG 775
||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||
Sbjct 716 AAATGTGGTCCGAGAGCCAATGCAAAGACTCGTCCTCCTTCCGAGTCGTCACCACTGAAG 775
Query 776 CAAAACAATTCGTTTGCCTTGGCTCTTCGTAGAGAGATGTATAACCTCCCAGACTTTCAG 835
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 776 CAAAACAATTCGTTTGCCTTGGCTCTTCGTAGAGAGATGTATAACCTCCCTGACTTTCAG 835
Query 836 ACTGACTATGAGGATGCCAAATTTTTCGTAATCAAGTCCTACAGTGAAGATGATGTCCAC 895
||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| |||
Sbjct 836 ACTGACTATGAAGATGCCAAGTTTTTCGTAATCAAGTCGTACAGCGAAGATGATGTTCAC 895
Query 896 AAGAGTATCAAATATTCTGTGTGGTCAAGCACTATCAACGGAAACAAGAAACTCGATGCA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAGAGTATCAAATATTCTGTGTGGTCAAGCACTATCAACGGAAACAAGAAACTCGATGCA 955
Query 956 GCTTTCCGCGATGCTGAAACAAAAACACTCGAGGATGGCAAGAAACGACCAATATTTCTC 1015
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 956 GCTTTCCGTGATGCTGAAACAAAAACACTCGAGGATGGCAAGAAACGTCCAATATTTCTC 1015
Query 1016 TTCTTCTCGGTGAATGCGAGTAGACAATTTGTGGGATTAGCTGAGATGGTTGGATATGTG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TTCTTCTCGGTGAATGCGAGTAGACAATTTGTGGGATTAGCTGAGATGGTTGGATATGTG 1075
Query 1076 GACTTCAACAAGGATTTAGATTTCTGGCAGGTTGATAAGTGGAGCGGCTTTTTCCCGGTT 1135
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1076 GACTTCAACAAGGATTTGGATTTCTGGCAGGTTGATAAGTGGAGTGGCTTTTTCCCTGTT 1135
Query 1136 GAATGGCATGTGGTTAAAGATATCCCTAACTGGGAACTACGCCATATCATCCTCGACAAC 1195
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1136 GAATGGCATGTGGTTAAAGATATTCCTAACTGGGAACTACGCCATATCATCCTCGACAAC 1195
Query 1196 AATGAGGACAAGCCAGTTACTCATACGAGGGATACTCACGAGATCAAACTCAAAGAAGGT 1255
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1196 AATGAGGACAAGCCAGTTACTCATACGAGAGATACTCACGAGATCAAACTCAAAGAAGGT 1255
Query 1256 CTCCAAATGCTTTCGATATTCAAGAAGTACTCTGCGGTAACATATTTGTTAGACGACATG 1315
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1256 CTCCAAATGCTTTCGATATTCAAGAAGTACTCTGCGGTAACATTTTTGTTAGACGACATG 1315
Query 1316 GACTTCTACGAAGAGCGAGAGAAGTCTCTTCGAATGAAAAAGGAGCATAAACCAGCCACT 1375
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1316 GACTTCTACGAAGAGCGAGAGAAGTCTCTTCGAGCGAAGAAGGAGCATAAACCAGCCACT 1375
Query 1376 CTTCGCATGGATCTCTTCAAAGAGAAAGACTATGATTATGAGATGGAAGGAAACAGGAGA 1435
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1376 CTTCGCATGGATCTCTTCAAAGAGAAAGACTATGACTATGAGATGGAAGGCAACAGGAGA 1435
Query 1436 GTGAATCATCAAGAAAGAGGATATAATTGGAACAGAAGTAGCAGTAGCCAAACACAAGAA 1495
||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| |
Sbjct 1436 ATGAATCACCAAGAAAGAGGATATAATTGGAACAGAAGTAGCAATAGCAAAACACAAGCA 1495
Query 1496 TCTCTTGTCAATCGAACCAAGAATCTCTCCATAAGAGGCTACTCTGCTTCCAAGAAGGGC 1555
||||||||||||| ||||||| |||| ||||||||||||||||||| || ||||||| |
Sbjct 1496 TCTCTTGTCAATCAAACCAAGTATCTTTCCATAAGAGGCTACTCTGGTTACAAGAAGAAC 1555
Query 1556 ACTGGCAATTCAAAATGAGATGACATTCTTCAATCTTTAGTTCCTCGTCTTCTTTATTTT 1615
||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1556 ACTGGCAATTCAACATGAGATGACATTCGTCAATCTTTAATTCCTCGTCTTCTTTATTTT 1615
Query 1616 ATTCAGTCATGAATTGCTTTAGTTAGTTCAGGAATCATTAGG-TTCtttttt-tG--GTT 1671
||||| ||||||||||||||||| |||||||||||||||||| || |||||| | |||
Sbjct 1616 ATTCATTCATGAATTGCTTTAGTCAGTTCAGGAATCATTAGGGTTTTTTTTTCTTCCGTT 1675
Query 1672 -T--GG-TTTG-T----ATTT---C-AT---AT-T-CAGATCTCTTTAAGCCTACGGATT 1713
| || |||| | |||| | || || | ||||| |||||| ||| |||||||
Sbjct 1676 GTTAGGGTTTGGTTTCTATTTTTTCTATTTCATATTCAGATGTCTTTAGGCCCACGGATT 1735
Query 1714 CATTTTCACGATCTCAATAATACAATAATCAGTTTTCAGATAC 1756
|||||||||||||||||| ||| ||| | | |||||||||||
Sbjct 1736 CATTTTCACGATCTCAATGATA-AATCA-C--TTTTCAGATAC 1774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86846942850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5