BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471085

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09815.1 | Symbols: POLD4 | polymerase delta 4 | chr1:318936...   632    0.0  


> AT1G09815.1 | Symbols: POLD4 | polymerase delta 4 | chr1:3189369-3190242 
FORWARD LENGTH=658
Length=658

 Score =  632 bits (342),  Expect = 0.0
 Identities = 407/437 (93%), Gaps = 10/437 (2%)
 Strand=Plus/Plus

Query  1    GACTCAAAGATTCAAAATTCGAACTGC-A-GAGAGA-A-AGAGAAAGAGAAAGGAGGCTA  56
            ||||||||||||||||||| ||||||| | |||||| | |||||||||||||||||||||
Sbjct  33   GACTCAAAGATTCAAAATTTGAACTGCAACGAGAGAGAGAGAGAAAGAGAAAGGAGGCTA  92

Query  57   T-G-G-CGA---CGAAGAATTTGAAGGGTTTCTACAAGCAGACTAAAAGCAATGTCACCG  110
            | | | |||   ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  93   TGGCGACGACGGCGAAGAATTTGAAGGGTTTCTACAAGCAGACTAAAAGCAATATCACCG  152

Query  111  GAGGTATCTCCAAGTCCAAGCCTTCTTCACGGAAAGTCACTCCCAAACACGCGGCGGCTC  170
            |||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||
Sbjct  153  GAGGTATCTCCAAGTCCAAGCCTTCTTCCCGGAAAGTGGCTCCCAAACACGCGGCGGCTC  212

Query  171  AAGGTTCTGATGTTACCCAGCCCGCCGCATTGATTTCACACGGCTCCCTCGATCTCAATG  230
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct  213  AAGGTTCTGATGTTACCCAGCCCGCCGCATTGATTTCACACGGCTCCGTCGATCTCAACG  272

Query  231  AGGATTATGGCAAGGAGGAGGAGATGCTTAGACAATTTGACATGAACATCGCCTATGGTC  290
            ||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct  273  AGGATTATGACAAGGAGGAGGAGATGCTTAGACAATTTGACATGAACATCACTTATGGTC  332

Query  291  CTTGCTTGGGTATGACCAGACTTGATCGATGGGAGCGTGCTCTGCGTCTTGGAATGAACC  350
            | ||| |||||||||| |||||||||||||||||||||||  |||||||||| |||||||
Sbjct  333  CGTGCCTGGGTATGACGAGACTTGATCGATGGGAGCGTGCAGTGCGTCTTGGGATGAACC  392

Query  351  CTCCCAATGAAATCGAGAAGCTTTTGAAAACTGGGAAAGTTCAGCAAGATTGTCTGTGGC  410
            |||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct  393  CTCCCAATGAAATCGAGAAGCTTTTGAAGACCGGGAAAGTCCAGCAAGATTGTCTGTGGC  452

Query  411  AAGGTCGCGTCTAGATA  427
            ||||||| |||||||||
Sbjct  453  AAGGTCGTGTCTAGATA  469


 Score =  163 bits (88),  Expect = 1e-39
 Identities = 106/114 (93%), Gaps = 3/114 (3%)
 Strand=Plus/Plus

Query  448  TGGTTGGGATGTTTGGTTCAGCCACTGGCTGGATCCA---CACATGTAGTGTCCTCGATG  504
            ||| ||||||||||||||||| |||||||||||||||   ||||||||||||||||||||
Sbjct  537  TGGATGGGATGTTTGGTTCAGTCACTGGCTGGATCCACCCCACATGTAGTGTCCTCGATG  596

Query  505  TTTCTAGTCTCAAGTGATAATGTTAAAACCTTGGTAATGGAATGCATCTTGTTT  558
            |||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct  597  TTTCTAGTTTCAGGCGATAATGTTAAAACCTTGGTAATGGAATGCATCTTGTTT  650



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26774800351


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5