BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471086
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09820.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2826 0.0
> AT1G09820.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:3190288-3192414 REVERSE LENGTH=2127
Length=2127
Score = 2826 bits (1530), Expect = 0.0
Identities = 1749/1855 (94%), Gaps = 14/1855 (1%)
Strand=Plus/Plus
Query 1 ATGTTCCCCAAATCCTTCGCCGTAAGTAGAAAAATCTCGAATTTCATAAAACAAGCT-TC 59
||||||||||||||||| |||||||||||||||| ||||||||| | |||| || | ||
Sbjct 1 ATGTTCCCCAAATCCTTAGCCGTAAGTAGAAAAAACTCGAATTTAACAAAAGGAG-TCTC 59
Query 60 GGGTTTAAGAAGACTCGGTTCTTCTTTAGCTACCATCACCGGAAGCCCTTGCCCACCCAG 119
||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||| ||
Sbjct 60 TGGTTTAAGAAGACTCTGTTCTTCTTCATCTACCATCACCGGGAGCCCTTGCCCACCTAG 119
Query 120 ATTTGATGTAGCTGTCATCGCTGATCTCATAGAGAAGCAACACTGGTCAAAGCTTGGATT 179
|| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |
Sbjct 120 ATATGACGTAGCTGTCATCGCTGATCTCATAGAGAAGCAGCACTGGTCAAAGCTCGGAGT 179
Query 180 TCATGTGAAAGACATAAATCCTAACGAGCTGTTTCGACAGTTGATAAGTTCTGAGCTTAA 239
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 TCATGTGACAGACATAAACCCTAACGAGCTGTTTCGACAGTTGATAAGTTCTGAGCTTGA 239
Query 240 TCCAGATTTGTGCCTCAGGTACTATACCTGGTTAGTGAAGAACCGTGACATCTCTGTTTC 299
||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 240 CCCAGATTTGTGTCTCAGGTACTATTCCTGGTTAGTGAAGAACAGTGACATCTCTGTTTC 299
Query 300 -GTTAGAGCTCACATTTAAGCTCTTGCATTCTCTCGCGAATGCGAAAAGGTACTCTAAGA 358
|| ||||||||||||||||||||||||||||| || ||||||||||||||||| || |
Sbjct 300 ACTT-GAGCTCACATTTAAGCTCTTGCATTCTCTTGCCAATGCGAAAAGGTACTCAAAAA 358
Query 359 TCCGATCTTTCCTTGATGGGTTTGTGAGGAATGGATCTGATCATCAGGTTCACTCGATTT 418
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 359 TCCGATCTTTCCTTGATGGGTTTGTGAGAAATGGATCTGATCATCAAGTTCACTCGATTT 418
Query 419 TCCATGCAATTTCAATGTGTGACAATGTTTGTGTCAATTCGATTATAGCTGATATGTTGG 478
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCCATGCAATCTCTATGTGTGACAATGTTTGTGTCAATTCGATTATAGCTGATATGTTGG 478
Query 479 TATTGGCTTATGCGAATAATTCGAGATTCGAGTTAGGATTTGAGGCGTTTAAGCGTTCAG 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TATTAGCTTATGCGAATAATTCGAGATTCGAGTTAGGATTTGAGGCGTTTAAGCGTTCAG 538
Query 539 GTTATTATGGGTATAAGTTGTCGGCTTTGTCTTGTAAGCCTTTGATGGTTGCGTTGTTGA 598
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 539 GTTATTATGGGTATAAGTTGTCGGCTTTGTCTTGTAAGCCTTTGATGATTGCGTTGTTGA 598
Query 599 AGCAGAATCGGTCTGCGGATGTTGAATATGTGTATAAGGAGATGATTAGGAGGAAGATTC 658
|| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGGAGAATCGTTCTGCTGATGTTGAATATGTGTATAAGGAGATGATTAGGAGGAAGATTC 658
Query 659 AACCAAATGTGTTCACTTTCAATGTTGTGATCAACGCGTTGTGCAAAACTGGGAAAATGA 718
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 AACCAAATGTGTTCACTTTCAATGTTGTGATCAATGCGTTGTGCAAAACTGGGAAAATGA 718
Query 719 TTAAAGCTAGGGATGTTATGGAGGACATGAAAGTGTATGGGTATTCTCCAAATGTAGTTA 778
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 719 ATAAAGCTAGGGATGTTATGGAGGACATGAAAGTTTATGGGTGTTCTCCAAATGTAGTTA 778
Query 779 GTTACAACACTCTGATAGATGGGTACTGCAAGCTTGGGGGAAATGGGAAAATGTACAAAG 838
||||||||||||| || |||||||| || |||||||| ||||||||||||||||||||||
Sbjct 779 GTTACAACACTCTCATTGATGGGTATTGTAAGCTTGGTGGAAATGGGAAAATGTACAAAG 838
Query 839 CAGACGCGGTTTTGAAGGAAATGGTGGAGAATGAAGTGTCACCGAACTTGACAACATTCA 898
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 839 CAGACGCGGTTTTGAAGGAAATGGTGGAGAATGATGTGTCTCCGAACTTGACTACATTCA 898
Query 899 ATATACTGATTGATGGGTTCTGGAAAGATGACAACCTTCCGGGTAGTTTGAAGGTGTTTA 958
||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 899 ATATATTGATTGATGGGTTCTGGAAAGATGACAACCTTCCGGGGAGTATGAAGGTGTTTA 958
Query 959 AAGAGATGCTGGATCAAGACGTGATACCGAATGTGATCACTTATAATTCGTTCATAAATG 1018
|||||||||||||||||||||||| ||||||||||||| | |||||||| || |||||||
Sbjct 959 AAGAGATGCTGGATCAAGACGTGAAACCGAATGTGATCTCGTATAATTCATTGATAAATG 1018
Query 1019 GTTTGTGCAATGGAGGTAAGATCAGCGAGGCTATTGGTATGCGCGATAAGATGGTCAGTG 1078
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1019 GTTTGTGCAATGGAGGAAAGATCAGCGAGGCTATTAGTATGCGCGATAAGATGGTAAGTG 1078
Query 1079 CAGGTGTGCAGCCTAACTTAATTACTTACAACT-CTCTTATAAACGGGTTTTGCAAGAAC 1137
||||||||||||||||| ||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1079 CAGGTGTGCAGCCTAACCTAATTACTTACAA-TGCTCTTATAAATGGGTTTTGCAAGAAC 1137
Query 1138 GGTATGCTGAAGGAAGCTCTTGATATGTTTGACTCAGTAAAAGGCCAAGGAGCTCGT-CC 1196
| ||||||||||||||||||||||||||||| |||||| ||||||||||||||| || ||
Sbjct 1138 GATATGCTGAAGGAAGCTCTTGATATGTTTGGCTCAGTGAAAGGCCAAGGAGCT-GTTCC 1196
Query 1197 CACTACTAGAATGTATAACATGCTTATCAATGCGTATTGTAAGTTAGGCAAAATCGATGA 1256
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1197 CACTACTAGAATGTATAACATGCTTATCGATGCGTATTGTAAGTTAGGCAAAATCGATGA 1256
Query 1257 TGGCTTTACACTGAAAGAAGAGATGGAACGAGAAGGGATTGTACCAGATGTTGGAACTTA 1316
||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1257 TGGCTTTGCACTGAAAGAAGAGATGGAGCGGGAGGGGATTGTACCAGATGTTGGAACTTA 1316
Query 1317 TAATTGCTTGATTGCTGGTCTATGTAGAAACGGTAACATAGAAGCAGCTAAGAAGCTTTT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TAATTGCTTGATTGCTGGTCTATGTAGAAACGGTAACATAGAAGCAGCTAAGAAGCTTTT 1376
Query 1377 TGATCAATTGACTAATAAAGGACTTCCTGATCTTGTGACATTTCACATACTAATGGAGGG 1436
|||||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1377 TGATCAGTTGACTAGTAAAGGACTTCCTGACCTTGTGACGTTTCACATACTAATGGAGGG 1436
Query 1437 TTATTGCAGCAAAGGTGAATCGAGAAAAGC-GACAATGCTTTTGAAAGAAATGTCAAAGA 1495
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1437 ATATTGCAGAAAAGGTGAATCGAGAAAAGCAG-CAATGCTTTTGAAAGAAATGTCAAAGA 1495
Query 1496 TGGGTCTGAAACCGAGACATCTGACATATAACATTTTGATGAAAGGCTACTGTAAGGAAG 1555
|||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1496 TGGGGCTGAAACCGAGACATCTGACTTATAACATTGTGATGAAAGGCTACTGTAAGGAAG 1555
Query 1556 GAAATCTGAAGGCAGCAACGAACATGAGGACACAGATGGAGAAAGAAAGACGGTTGCGGA 1615
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1556 GAAATCTGAAGGCAGCAACGAACATGAGGACACAGATGGAGAAAGAAAGACGGTTGCGAA 1615
Query 1616 TGAATGTAGCATCATATAATGTGCTTCTACAAGGATATTCTCAAAAGGGAAAGTTGGAAG 1675
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1616 TGAATGTAGCGTCATATAATGTGCTTCTGCAAGGATATTCTCAAAAGGGAAAGTTGGAGG 1675
Query 1676 ATGCAAACATGCTTTTGAATGAGATGTTGGAGAAAGGTGTAGTCCCGAACAGAATAACCT 1735
|||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||
Sbjct 1676 ATGCAAACATGCTTTTGAATGAGATGTTAGAGAAAGGTCTAGTCCCGAACCGAATAACCT 1735
Query 1736 ATGAGATAGTTAAAGAAGAAATGGTAGATAAAGGTTTCGTCCCAGACATTGAAGGGCATC 1795
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1736 ATGAGATAGTTAAAGAAGAAATGGTAGATCAAGGTTTCGTCCCAGACATTGAAGGGCATC 1795
Query 1796 TATGT-AACGTCTCCACCAAATCCTAAA-TTATCAGTGACCATTATGAGAAGCAA 1848
||| | |||||||| |||||||||||| || |||||| |||| |||||||||||
Sbjct 1796 TAT-TCAACGTCTCTACCAAATCCTAATCTT-TCAGTGGCCATCATGAGAAGCAA 1848
Score = 231 bits (125), Expect = 2e-59
Identities = 175/197 (89%), Gaps = 11/197 (6%)
Strand=Plus/Plus
Query 1880 ACCCTGCAGAATCTTGTTCTATCGGAGACCAGTGTGACTCAAGCTTCCCAGATTGTATGG 1939
||||||||||||||||||||||| ||||||| | |||||||||| ||||| |||||
Sbjct 1926 ACCCTGCAGAATCTTGTTCTATCAGAGACCA----G--TCAAGCTTCCTAGATTATATGG 1979
Query 1940 CGTTATACTGGATTGTGTCTTCTGTTTTCTGCTATGCCTACAGGTCCCTGGATTATATA- 1998
||||||||||||||||| | ||| ||||||||||| |||||| ||||| |||||||
Sbjct 1980 CGTTATACTGGATTGTG---T-AGTTCTCTGCTATGCCCACAGGTTCCTGGGTTATATAT 2035
Query 1999 ATGATTCAGCTTCATTTGGTAACTCAGAGAAAGTTTAGATCTTGTAACTTTACTGTTCTT 2058
||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||
Sbjct 2036 ATGATTCAGCTTCATTTGGAAACTGAGAGAAAGTTCAGATCTTGTAACTTTACTGTTCTT 2095
Query 2059 GTAATTACATGACACCA 2075
|||||||||||||||||
Sbjct 2096 GTAATTACATGACACCA 2112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102860916705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5