BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471086 Length=2075 Score E Sequences producing significant alignments: (Bits) Value AT1G09820.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2826 0.0 > AT1G09820.1 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr1:3190288-3192414 REVERSE LENGTH=2127 Length=2127 Score = 2826 bits (1530), Expect = 0.0 Identities = 1749/1855 (94%), Gaps = 14/1855 (1%) Strand=Plus/Plus Query 1 ATGTTCCCCAAATCCTTCGCCGTAAGTAGAAAAATCTCGAATTTCATAAAACAAGCT-TC 59 ||||||||||||||||| |||||||||||||||| ||||||||| | |||| || | || Sbjct 1 ATGTTCCCCAAATCCTTAGCCGTAAGTAGAAAAAACTCGAATTTAACAAAAGGAG-TCTC 59 Query 60 GGGTTTAAGAAGACTCGGTTCTTCTTTAGCTACCATCACCGGAAGCCCTTGCCCACCCAG 119 ||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||| || Sbjct 60 TGGTTTAAGAAGACTCTGTTCTTCTTCATCTACCATCACCGGGAGCCCTTGCCCACCTAG 119 Query 120 ATTTGATGTAGCTGTCATCGCTGATCTCATAGAGAAGCAACACTGGTCAAAGCTTGGATT 179 || ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| | Sbjct 120 ATATGACGTAGCTGTCATCGCTGATCTCATAGAGAAGCAGCACTGGTCAAAGCTCGGAGT 179 Query 180 TCATGTGAAAGACATAAATCCTAACGAGCTGTTTCGACAGTTGATAAGTTCTGAGCTTAA 239 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 180 TCATGTGACAGACATAAACCCTAACGAGCTGTTTCGACAGTTGATAAGTTCTGAGCTTGA 239 Query 240 TCCAGATTTGTGCCTCAGGTACTATACCTGGTTAGTGAAGAACCGTGACATCTCTGTTTC 299 ||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 240 CCCAGATTTGTGTCTCAGGTACTATTCCTGGTTAGTGAAGAACAGTGACATCTCTGTTTC 299 Query 300 -GTTAGAGCTCACATTTAAGCTCTTGCATTCTCTCGCGAATGCGAAAAGGTACTCTAAGA 358 || ||||||||||||||||||||||||||||| || ||||||||||||||||| || | Sbjct 300 ACTT-GAGCTCACATTTAAGCTCTTGCATTCTCTTGCCAATGCGAAAAGGTACTCAAAAA 358 Query 359 TCCGATCTTTCCTTGATGGGTTTGTGAGGAATGGATCTGATCATCAGGTTCACTCGATTT 418 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 359 TCCGATCTTTCCTTGATGGGTTTGTGAGAAATGGATCTGATCATCAAGTTCACTCGATTT 418 Query 419 TCCATGCAATTTCAATGTGTGACAATGTTTGTGTCAATTCGATTATAGCTGATATGTTGG 478 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 TCCATGCAATCTCTATGTGTGACAATGTTTGTGTCAATTCGATTATAGCTGATATGTTGG 478 Query 479 TATTGGCTTATGCGAATAATTCGAGATTCGAGTTAGGATTTGAGGCGTTTAAGCGTTCAG 538 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 TATTAGCTTATGCGAATAATTCGAGATTCGAGTTAGGATTTGAGGCGTTTAAGCGTTCAG 538 Query 539 GTTATTATGGGTATAAGTTGTCGGCTTTGTCTTGTAAGCCTTTGATGGTTGCGTTGTTGA 598 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 539 GTTATTATGGGTATAAGTTGTCGGCTTTGTCTTGTAAGCCTTTGATGATTGCGTTGTTGA 598 Query 599 AGCAGAATCGGTCTGCGGATGTTGAATATGTGTATAAGGAGATGATTAGGAGGAAGATTC 658 || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AGGAGAATCGTTCTGCTGATGTTGAATATGTGTATAAGGAGATGATTAGGAGGAAGATTC 658 Query 659 AACCAAATGTGTTCACTTTCAATGTTGTGATCAACGCGTTGTGCAAAACTGGGAAAATGA 718 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 659 AACCAAATGTGTTCACTTTCAATGTTGTGATCAATGCGTTGTGCAAAACTGGGAAAATGA 718 Query 719 TTAAAGCTAGGGATGTTATGGAGGACATGAAAGTGTATGGGTATTCTCCAAATGTAGTTA 778 ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 719 ATAAAGCTAGGGATGTTATGGAGGACATGAAAGTTTATGGGTGTTCTCCAAATGTAGTTA 778 Query 779 GTTACAACACTCTGATAGATGGGTACTGCAAGCTTGGGGGAAATGGGAAAATGTACAAAG 838 ||||||||||||| || |||||||| || |||||||| |||||||||||||||||||||| Sbjct 779 GTTACAACACTCTCATTGATGGGTATTGTAAGCTTGGTGGAAATGGGAAAATGTACAAAG 838 Query 839 CAGACGCGGTTTTGAAGGAAATGGTGGAGAATGAAGTGTCACCGAACTTGACAACATTCA 898 |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| Sbjct 839 CAGACGCGGTTTTGAAGGAAATGGTGGAGAATGATGTGTCTCCGAACTTGACTACATTCA 898 Query 899 ATATACTGATTGATGGGTTCTGGAAAGATGACAACCTTCCGGGTAGTTTGAAGGTGTTTA 958 ||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 899 ATATATTGATTGATGGGTTCTGGAAAGATGACAACCTTCCGGGGAGTATGAAGGTGTTTA 958 Query 959 AAGAGATGCTGGATCAAGACGTGATACCGAATGTGATCACTTATAATTCGTTCATAAATG 1018 |||||||||||||||||||||||| ||||||||||||| | |||||||| || ||||||| Sbjct 959 AAGAGATGCTGGATCAAGACGTGAAACCGAATGTGATCTCGTATAATTCATTGATAAATG 1018 Query 1019 GTTTGTGCAATGGAGGTAAGATCAGCGAGGCTATTGGTATGCGCGATAAGATGGTCAGTG 1078 |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||| Sbjct 1019 GTTTGTGCAATGGAGGAAAGATCAGCGAGGCTATTAGTATGCGCGATAAGATGGTAAGTG 1078 Query 1079 CAGGTGTGCAGCCTAACTTAATTACTTACAACT-CTCTTATAAACGGGTTTTGCAAGAAC 1137 ||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||||||| Sbjct 1079 CAGGTGTGCAGCCTAACCTAATTACTTACAA-TGCTCTTATAAATGGGTTTTGCAAGAAC 1137 Query 1138 GGTATGCTGAAGGAAGCTCTTGATATGTTTGACTCAGTAAAAGGCCAAGGAGCTCGT-CC 1196 | ||||||||||||||||||||||||||||| |||||| ||||||||||||||| || || Sbjct 1138 GATATGCTGAAGGAAGCTCTTGATATGTTTGGCTCAGTGAAAGGCCAAGGAGCT-GTTCC 1196 Query 1197 CACTACTAGAATGTATAACATGCTTATCAATGCGTATTGTAAGTTAGGCAAAATCGATGA 1256 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1197 CACTACTAGAATGTATAACATGCTTATCGATGCGTATTGTAAGTTAGGCAAAATCGATGA 1256 Query 1257 TGGCTTTACACTGAAAGAAGAGATGGAACGAGAAGGGATTGTACCAGATGTTGGAACTTA 1316 ||||||| ||||||||||||||||||| || || |||||||||||||||||||||||||| Sbjct 1257 TGGCTTTGCACTGAAAGAAGAGATGGAGCGGGAGGGGATTGTACCAGATGTTGGAACTTA 1316 Query 1317 TAATTGCTTGATTGCTGGTCTATGTAGAAACGGTAACATAGAAGCAGCTAAGAAGCTTTT 1376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1317 TAATTGCTTGATTGCTGGTCTATGTAGAAACGGTAACATAGAAGCAGCTAAGAAGCTTTT 1376 Query 1377 TGATCAATTGACTAATAAAGGACTTCCTGATCTTGTGACATTTCACATACTAATGGAGGG 1436 |||||| ||||||| ||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1377 TGATCAGTTGACTAGTAAAGGACTTCCTGACCTTGTGACGTTTCACATACTAATGGAGGG 1436 Query 1437 TTATTGCAGCAAAGGTGAATCGAGAAAAGC-GACAATGCTTTTGAAAGAAATGTCAAAGA 1495 |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 1437 ATATTGCAGAAAAGGTGAATCGAGAAAAGCAG-CAATGCTTTTGAAAGAAATGTCAAAGA 1495 Query 1496 TGGGTCTGAAACCGAGACATCTGACATATAACATTTTGATGAAAGGCTACTGTAAGGAAG 1555 |||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 1496 TGGGGCTGAAACCGAGACATCTGACTTATAACATTGTGATGAAAGGCTACTGTAAGGAAG 1555 Query 1556 GAAATCTGAAGGCAGCAACGAACATGAGGACACAGATGGAGAAAGAAAGACGGTTGCGGA 1615 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1556 GAAATCTGAAGGCAGCAACGAACATGAGGACACAGATGGAGAAAGAAAGACGGTTGCGAA 1615 Query 1616 TGAATGTAGCATCATATAATGTGCTTCTACAAGGATATTCTCAAAAGGGAAAGTTGGAAG 1675 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 1616 TGAATGTAGCGTCATATAATGTGCTTCTGCAAGGATATTCTCAAAAGGGAAAGTTGGAGG 1675 Query 1676 ATGCAAACATGCTTTTGAATGAGATGTTGGAGAAAGGTGTAGTCCCGAACAGAATAACCT 1735 |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| Sbjct 1676 ATGCAAACATGCTTTTGAATGAGATGTTAGAGAAAGGTCTAGTCCCGAACCGAATAACCT 1735 Query 1736 ATGAGATAGTTAAAGAAGAAATGGTAGATAAAGGTTTCGTCCCAGACATTGAAGGGCATC 1795 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1736 ATGAGATAGTTAAAGAAGAAATGGTAGATCAAGGTTTCGTCCCAGACATTGAAGGGCATC 1795 Query 1796 TATGT-AACGTCTCCACCAAATCCTAAA-TTATCAGTGACCATTATGAGAAGCAA 1848 ||| | |||||||| |||||||||||| || |||||| |||| ||||||||||| Sbjct 1796 TAT-TCAACGTCTCTACCAAATCCTAATCTT-TCAGTGGCCATCATGAGAAGCAA 1848 Score = 231 bits (125), Expect = 2e-59 Identities = 175/197 (89%), Gaps = 11/197 (6%) Strand=Plus/Plus Query 1880 ACCCTGCAGAATCTTGTTCTATCGGAGACCAGTGTGACTCAAGCTTCCCAGATTGTATGG 1939 ||||||||||||||||||||||| ||||||| | |||||||||| ||||| ||||| Sbjct 1926 ACCCTGCAGAATCTTGTTCTATCAGAGACCA----G--TCAAGCTTCCTAGATTATATGG 1979 Query 1940 CGTTATACTGGATTGTGTCTTCTGTTTTCTGCTATGCCTACAGGTCCCTGGATTATATA- 1998 ||||||||||||||||| | ||| ||||||||||| |||||| ||||| ||||||| Sbjct 1980 CGTTATACTGGATTGTG---T-AGTTCTCTGCTATGCCCACAGGTTCCTGGGTTATATAT 2035 Query 1999 ATGATTCAGCTTCATTTGGTAACTCAGAGAAAGTTTAGATCTTGTAACTTTACTGTTCTT 2058 ||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| Sbjct 2036 ATGATTCAGCTTCATTTGGAAACTGAGAGAAAGTTCAGATCTTGTAACTTTACTGTTCTT 2095 Query 2059 GTAATTACATGACACCA 2075 ||||||||||||||||| Sbjct 2096 GTAATTACATGACACCA 2112 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102860916705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5