BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471087
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09830.1 | Symbols: | Glycinamide ribonucleotide (GAR) synt... 2710 0.0
> AT1G09830.1 | Symbols: | Glycinamide ribonucleotide (GAR) synthetase
| chr1:3192681-3195025 REVERSE LENGTH=1790
Length=1790
Score = 2710 bits (1467), Expect = 0.0
Identities = 1664/1756 (95%), Gaps = 25/1756 (1%)
Strand=Plus/Plus
Query 1 ACGCTGGTCCGAGTCC--A-TCCGCTACTTTGACAGTCTCTCTTGCCTCCATGTCGTCGT 57
|||||||||||||||| | ||| |||||||||||| |||| |||||||||||||||
Sbjct 45 ACGCTGGTCCGAGTCCAGAGTCCTCTACTTTGACAG--TCTC---CCTCCATGTCGTCGT 99
Query 58 TGTGTGCATCTAATTTCTATCCTTCATCTTCTTCTTCTATCAATCTCTTCT----C--CA 111
||||||||||||||| |||||||||| |||||||||||||||||||||| | ||
Sbjct 100 TGTGTGCATCTAATTGCTATCCTTCA---TCTTCTTCTATCAATCTCTTCTCCAACAACA 156
Query 112 ACAACCCAACTAAACCCTTTCTTCTCTCCCTCAGATTCGCCACCTCCAATTCTCTTCCCT 171
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 157 ACAACCCAACTAAACCCTTTCTTCTCTCCCTCAGATTCGCCTCCTCCAATTCTCTTCCAT 216
Query 172 TTGTTGCTCCTCTCAAATTCTCTACCACCAATCACGTCCTTAG---CTCTCGTTTCTCTT 228
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 217 TTGTTGCTCCTCTCAAATTCTCTACTACCAATCACGTCCTTAGTAACTCTCGTTTCTCTT 276
Query 229 CGAACCGATTCCAAAGACGCCATTTTTTGCTTCGATGCGTTTCAGAAGAATCTGAGCCGT 288
|||||||| |||||||||||| ||||||||| ||||||||||||||||||||| ||||||
Sbjct 277 CGAACCGAATCCAAAGACGCCTTTTTTTGCTCCGATGCGTTTCAGAAGAATCTCAGCCGT 336
Query 289 CTCTTTCGGTCGGTAACGGCGGCTCTGAAGAAAGAGTGAATGTTCTTGTTATTGGTGGAG 348
||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 337 CTCTTTCTATCGGTAACGGCGGCTCTGAAGAGAGAGTGAATGTTCTTGTAATTGGTGGAG 396
Query 349 GAGGGAGAGAACACGCCCTTTGCTACGCCTTGAAACGATCTCCATCTTGTGATTCTGTGT 408
||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||
Sbjct 397 GAGGGAGAGAACACGCCCTTTGCCACGCCTTGAAGCGGTCTCCTTCTTGTGATTCTGTGT 456
Query 409 TATGCGCACCTGGAAACGCCGGTATATCAAGTTCCGGAGATGCCACTTGTGTACCTGACC 468
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 457 TATGCGCACCTGGAAACGCCGGTATATCCAGTTCCGGAGATGCCACTTGTGTACCTGACC 516
Query 469 TTGACATATCAGACAGTTTAGCTGTCATCTCTTTCTGTCAAAAATGGAATGTCGGTTTAG 528
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 517 TTGACATATCAGACAGTTTAGCTGTCATCTCTTTCTGTCAGAAATGGAATGTTGGTTTAG 576
Query 529 TGGTTATTGGCCCTGAAGTGCCTCTTGTTGCGGGTCTCGCTAATGACCTCGTTAAGGCCG 588
||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 577 TGGTTGTTGGCCCTGAAGTGCCTCTTGTTGCTGGTCTCGCTAATGACCTTGTTAAGGCCG 636
Query 589 GTATCCTCACCTTTGGCCCTTCTTCTCAAGCTGCTGCTTTGGAAGGTTCCAAGAACTTTA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GTATCCTCACCTTTGGCCCTTCTTCTCAAGCTGCTGCTTTGGAAGGTTCCAAGAACTTTA 696
Query 649 TGAAGAATCTTTGCCTCAAGTACAATATCCCTACTGCTAAGTATAAAACATTTTCTGATG 708
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TGAAGAATCTTTGCCACAAGTACAATATCCCTACTGCTAAGTATAAAACATTTTCTGATG 756
Query 709 CATCTGCTGCGAAAGAATACATTCAAGAACAAGGGGCACCGATTGTGATTAAAGCGGATG 768
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 CATCTGCCGCGAAAGAATACATTCAAGAACAAGGGGCACCGATTGTGATTAAAGCGGATG 816
Query 769 GATTAGCAGCTGGAAAAGGAGTCACTGTTGCCATGGAACTAGAGGAGGCTTTTGAAGCTG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GATTAGCAGCTGGAAAAGGAGTCACTGTTGCCATGGAACTAGAGGAGGCTTTTGAAGCTG 876
Query 829 TTGATTCGATGCTGGTCAAAGGCGTGTTTGGTTCTGCAGGATGTCAGGTAGTCGTGGAGG 888
||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 877 TTGATTCTATGCTGGTCAAAGGTGTGTTTGGTTCTGCAGGATGTCAGGTGGTCGTTGAGG 936
Query 889 AGTTTCTCGAGGGAGAAGAAGCCTCCTTTTTCGCACTTGTGGATGGAGAAAACGCCATTC 948
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 937 AGTTTCTCGAGGGAGAAGAAGCGTCCTTCTTCGCACTTGTGGATGGAGAAAACGCCATTC 996
Query 949 CTCTAGAATCTGCTCAGGACCACAAGCGGGTTGGAGATGGAGATACCGGTCCTAACACAG 1008
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 997 CTCTAGAATCTGCTCAGGACCACAAGCGTGTTGGAGATGGAGATACCGGTCCTAACACAG 1056
Query 1009 GCGGAATGGGAGCTTATTCTCCTGCACCGGTCTTGACCAGGGAGCTTCAGGATTTTGTGA 1068
|||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1057 GCGGCATGGGAGCGTATTCTCCTGCACCGGTCTTGACCAAGGAGCTTCAGGATTTTGTGA 1116
Query 1069 TGGAGTCTATAATTCATCCCACTGTTAAAGGAATGGCAGAAGAAGGATGCAAGTTTGTCG 1128
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1117 TGGAGTCTATAATCCATCCCACTGTTAAAGGAATGGCTGAAGAAGGATGTAAGTTTGTCG 1176
Query 1129 GCGTTCTGTTTGCGGGTCTCATGATCGAGAAGAAATCCGGTTTGCCTAAGCTGATTGAGT 1188
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1177 GCGTTCTGTTTGCGGGTCTCATGATCGAGAAGAAATCCGGTTTGCCTAAGCTTATTGAGT 1236
Query 1189 TCAATGTACGGTTTGGAGATCCGGAATGTCAGGTACTGATGATGCGTCTAGAGTCTGACC 1248
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1237 TCAATGTACGGTTTGGAGATCCAGAATGTCAGGTATTGATGATGCGTCTAGAGTCTGACC 1296
Query 1249 TAGCAAAAGTCTTGCTAGCGGCTTGTAAAGGTGAGCTAAGCGGCGTGTCACTTGATTGGT 1308
|||||||||| |||||||||||||||||||| |||||||| || || |||||||||||||
Sbjct 1297 TAGCAAAAGTTTTGCTAGCGGCTTGTAAAGGCGAGCTAAGTGGTGTATCACTTGATTGGT 1356
Query 1309 CAAAAGATTCAGCAATGGTGGTTGTAATGGCAAGCAATGGTTATCCCGGTGCTTATGAGA 1368
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1357 CAAAAGATTCAGCAATGGTGGTTGTAATGGCAAGCAATGGTTATCCTGGTTCTTATGAGA 1416
Query 1369 AAGGATCAATCATCAGAAACCTTGAAGAAGCTGAAACG-GTAGCTCCTGGAGTGAAGGTT 1427
||||||||||||||| |||||||||||||||||||| | || ||||||||||||||||||
Sbjct 1417 AAGGATCAATCATCAAAAACCTTGAAGAAGCTGAAA-GAGTTGCTCCTGGAGTGAAGGTT 1475
Query 1428 TTCCATGCAGGAACGGATCTTGATTCAGAGGGGAATGTTATAGCGACTGGGGGACGTGTT 1487
||||| |||||||||| ||| |||||||||||||||||| |||| |||||||||||||||
Sbjct 1476 TTCCACGCAGGAACGGGTCTAGATTCAGAGGGGAATGTTGTAGCAACTGGGGGACGTGTT 1535
Query 1488 CTTGGGGTGACGGCGAAAGGG-AATGACTTGGAAGAGGCGCGTGAAAGAGCGTATTCGGC 1546
|||||||| |||||||| ||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1536 CTTGGGGTCACGGCGAA-GGGTAAAGACTTGGAAGAGGCGCGTGAAAGAGCGTACTCGGC 1594
Query 1547 GGTTCAACAGATCAACTGGCCTGGAGGTTTCTTTAGGCATGATATTGGTTGGAGAGCGCT 1606
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1595 AGTACAACAGATCAACTGGCCTGGAGGTTTCTTTAGGCATGATATTGGTTGGAGAGCTCT 1654
Query 1607 TCGCCAGAAACAAGTGGCGACGAAAGAAGAGTGATGAGAAGCAATTTTGTTGTAACGGCT 1666
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||
Sbjct 1655 TCGCCAGAAACAAGTGGCGACCAAAGAAGAGTGATGAGAAGGAATTTTGTTGTAATGGCT 1714
Query 1667 TGTAAACCAAGAAACCGAAA-CTTAAAACTCACTCCAATCTGTTAAGTGATGATTCAAAA 1725
||||||||||||| || ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1715 TGTAAACCAAGAATCCAAAAACTTAAAACTCACTCCAATCTGTTAAGAGATGATTCAAAA 1774
Query 1726 TAACATTTTTGTTTAC 1741
||||||||||||||||
Sbjct 1775 TAACATTTTTGTTTAC 1790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86093934675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5