BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471093
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09840.1 | Symbols: ATSK41, SK41 | shaggy-like protein kinas... 2350 0.0
AT1G57870.3 | Symbols: SK42 | shaggy-like kinase 42 | chr1:2143... 1454 0.0
> AT1G09840.1 | Symbols: ATSK41, SK41 | shaggy-like protein kinase
41 | chr1:3195824-3200279 REVERSE LENGTH=1899
Length=1899
Score = 2350 bits (1272), Expect = 0.0
Identities = 1389/1444 (96%), Gaps = 14/1444 (1%)
Strand=Plus/Plus
Query 108 aagaaagaagaagaagaagaCAATCGTCAAATGCTTGACTTTGGTTTCAGTTCTTCTTCA 167
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 AAGAAAGAAGAAGAA-AAGACAATCGTCAAATGCTTGACTTTGGTTTCAGTTCTTCTTCA 232
Query 168 CGACAGCTC----AAGATCGGCTCTTTGATGGGATGGGACACC---AATTCACCATGGG- 219
||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 233 CGACAGCTCAAGGAAGATCGGCTCTTTGATGGGATGGGACACCAAGAAATCACCATGGGT 292
Query 220 TTATGATGCTATCAA--A-TACTAGTACGTTTTATCTTCAGAATA-AGTATCATGGCATC 275
||||||||||||||| | || |||||||| |||||||| ||||| | ||||||||||||
Sbjct 293 TTATGATGCTATCAATTACTAGTAGTACGTGTTATCTTCTGAATATA-TATCATGGCATC 351
Query 276 TTCTGGACTGGGAAATGGAGTGGGCAGTTCGAGATCTGCCAAAGGTTTAAAGAGCTCTTC 335
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 352 CTCTGGACTGGGAAATGGAGTAGGCACTTCGAGATCTGCCAAAGGTTTAAAGAGCTCTTC 411
Query 336 TAGTTCAGTCGATTGGTTGACGAGAGATTTGGCTGAGACGAGGATAAGGGACAAAGTAGA 395
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 412 TAGTTCTGTCGATTGGTTGACCAGAGATTTGGCTGAGACGAGGATAAGGGACAAAGTAGA 471
Query 396 GACCGATGATGAGAGAGATAGTGAACCAGATATTATTGATGGGGCTGGTGCTGAACCTGG 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 472 GACCGATGATGAGAGAGATAGTGAACCAGATATTATTGATGGGGCTGGTGCTGAGCCTGG 531
Query 456 TCATGTGATTCGAACCACACTCCGTGGTCGAAATGGTCAATCAAGACAGACAGTTAGCTA 515
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 532 TCATGTGATTAGAACCACACTCCGTGGTCGAAATGGTCAATCAAGACAGACAGTCAGTTA 591
Query 516 CATATCAGAACATGTTGTCGGTACTGGTTCCTTTGGCATGGTTTTCCAAGCTAAATGTAG 575
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CATATCAGAACATGTTGTTGGTACTGGTTCCTTTGGCATGGTTTTCCAAGCTAAATGTAG 651
Query 576 GGAAACTGGGGAGGTTGTTGCTATCAAGAAGGTTCTACAAGACAAGCGGTACAAGAACAG 635
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 652 GGAAACTGGGGAGGTTGTTGCCATCAAGAAGGTTCTACAAGACAAACGCTACAAGAACAG 711
Query 636 AGAGCTACAAATAATGCAGATGCTAGACCATCCCAATGTCGTTGCTTTAAAGCATAGTTT 695
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 712 GGAGCTACAAATAATGCAGATGCTAGACCATCCCAATGCCGTTGCTTTAAAGCATAGCTT 771
Query 696 TTTCTCAAGAACAGACAATGAAGAGGTTTATTTGAATCTTGTCCTTGAATTTGTGCCTGA 755
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TTTCTCAAGAACAGACAACGAAGAGGTTTATTTGAATCTTGTCCTTGAATTTGTGCCTGA 831
Query 756 GACCGTCAATCGTGTTGCAAGAAGTTATAGTAGGACGAACCAGCTGATGCCATTGATATA 815
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 832 GACCGTCAATCGTGTTGCAAGAAGTTATAGTAGGACAAACCAGCTGATGCCATTGATATA 891
Query 816 CGTTAAACTCTACACCTATCAGATTTGCAGGGCGCTTGCTTACATCCATAACTCCTTTGG 875
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 892 TGTTAAACTCTACACCTATCAGATTTGCAGGGCGCTTGCTTACATCCATAATTCCTTTGG 951
Query 876 TCTTTGTCACCGTGATATTAAGCCTCAAAACCTGCTGGTAAACCCACACACGCATCAGCT 935
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 952 TCTTTGTCACCGTGATATCAAGCCTCAAAACCTGCTGGTGAACCCACACACGCATCAGCT 1011
Query 936 AAAAATATGTGATTTCGGGAGAGCAAAAGTGTTGGTAAAAGGAGAACCCAATGTTTCTTA 995
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1012 AAAAATATGTGATTTCGGGAGTGCAAAAGTGTTGGTAAAAGGAGAACCCAATGTTTCTTA 1071
Query 996 CATCTGCTCAAGATACTATCGTGCTCCAGAACTTATTTTTGGTGCCAGTGAATACACAAC 1055
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1072 CATCTGTTCTAGATACTATCGTGCTCCAGAACTCATTTTTGGTGCCAGTGAATACACAAC 1131
Query 1056 TGCAATCGATATATGGTCCACTGGTTGTGTGATGGCCGAACTACTTCTTGGACAGCCTCT 1115
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1132 TGCAATTGATATATGGTCCACTGGTTGTGTGATGGCCGAACTGCTTCTTGGACAGCCTCT 1191
Query 1116 GTTTCCTGGTGAGAGCGGAGTTGATCAACTTGTTGAAATCATTAAGGTTTTAGGTACACC 1175
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1192 GTTTCCTGGTGAGAGCGGAGTTGATCAGCTTGTTGAAATCATTAAGGTTTTAGGTACACC 1251
Query 1176 AACAAGGGAAGAAATCAAGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCCCAGAT 1235
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1252 AACAAGGGAAGAAATCAAGTGCATGAATCCAAACTATACAGAATTTAAGTTTCCGCAGAT 1311
Query 1236 AAAACCTCATCCATGGCACAAGGTGTTCCAAAAACGTTTGCCACCAGAAGCAGTTGATCT 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AAAACCTCATCCATGGCACAAGGTGTTCCAAAAACGTTTGCCACCAGAAGCAGTTGATCT 1371
Query 1296 TCTTTGTAGGTTCTTCCAGTATTCCCCTAATTTGAGATGTACAGCTTTGGAAGCTTGTAT 1355
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1372 TCTTTGTAGGTTCTTCCAATATTCCCCCAATTTGAGATGTACAGCTTTGGAAGCTTGTAT 1431
Query 1356 TCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACT 1415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 CCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACT 1491
Query 1416 TCCTCCACTTTTCAACTTTAAACCGCAAGAGCTATCTGGCATCCCTCCTGAAATCGTGAA 1475
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1492 TCCTCCACTTTTCAACTTTAAACCGCAAGAGCTATCTGGCATACCTCCTGAAATCGTGAA 1551
Query 1476 CAGGCTTGTACCAGAGCAAGCCCGTAAGCAGAACCTCTTCATGGCTTTGCATTCATAAGA 1535
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1552 CAGGCTTGTCCCAGAGCATGCCCGTAAGCAGAACCTCTTCATGGCTTTGCATTCGTAAGA 1611
Query 1536 CGCT 1539
||||
Sbjct 1612 CGCT 1615
Score = 152 bits (82), Expect = 1e-35
Identities = 93/98 (95%), Gaps = 1/98 (1%)
Strand=Plus/Plus
Query 13 GTCGTCTCATATTCTCGTTTGATTCAAAACGGTAGAAATCGAGAAAGAAGGCTGagaaga 72
||||||||||||||||||||||||||||||| |||||||||| |||||||| || |||||
Sbjct 1 GTCGTCTCATATTCTCGTTTGATTCAAAACGATAGAAATCGACAAAGAAGG-TGTGAAGA 59
Query 73 agttgtgaaaacaaaattaacgcttgaagaatctaaag 110
||||| ||||||||||||||||||||||||||||||||
Sbjct 60 AGTTGGGAAAACAAAATTAACGCTTGAAGAATCTAAAG 97
> AT1G57870.3 | Symbols: SK42 | shaggy-like kinase 42 | chr1:21431051-21436103
REVERSE LENGTH=1867
Length=1867
Score = 1454 bits (787), Expect = 0.0
Identities = 1163/1345 (86%), Gaps = 24/1345 (2%)
Strand=Plus/Plus
Query 188 TTTGATGGGATGGGACACC-AATTCACCATGGGTTATGATGCTATCAAATACTAGTACGT 246
||||||||||||||||||| |||| | | || ||||| || |||||| |||||||||||
Sbjct 366 TTTGATGGGATGGGACACCAAATT-GCTAAGGTTTATGGTGTTATCAATTACTAGTACGT 424
Query 247 TTTATCTTCAGAA-TA--AGTATCATGGCATCTTCTGGA-CTGGGAAATGGAGTGGGCAG 302
|||||||| ||| | | | ||||| ||| || | |||||||||||||| |||||
Sbjct 425 GTTATCTTCCGAACAACCACCACCATGGAATC-TC---ATCTGGGAAATGGAGTAGGCAG 480
Query 303 TTCGAGATCTGCCAAAGGTTTAAAGAGCTCTTCTAGTTCAGTCGATTGGTTGACG-AGAG 361
|||||||||||||||| | ||||| | ||||||||||||| |||||||||| | ||||
Sbjct 481 TTCGAGATCTGCCAAAAATACAAAGAACACTTCTAGTTCAGTTGATTGGTTGA-GCAGAG 539
Query 362 ATTTGGC-TGAGACGAGGATAAGGGACAAAG-TAGAGACCGATGATGAGAGAGATAGTGA 419
|| | || ||||| || |||||||||| ||| |||| | ||||| |||||||| |||||
Sbjct 540 ATAT-GCTTGAGATGAAGATAAGGGAC-AAGACAGAGGCTGATGAGGAGAGAGACAGTGA 597
Query 420 ACCAGATATTATTGATGGGGCTGGTGCTGAACCTGGTCATGTGATTC-GAACCACACTCC 478
||||||||| |||||||| | |||||| |||||||| ||||||| || ||| |||||||
Sbjct 598 ACCAGATATCATTGATGGAGTTGGTGCAGAACCTGGCCATGTGA-TCACAACTACACTCC 656
Query 479 GTGGTCGAAATGGTCAATCAAGACAGACAGTTAGCTACATATCAGAACATGTTGTCGGTA 538
||| |||||||||||||||||||||||||| || |||||| ||||||| || ||||| |
Sbjct 657 CTGGACGAAATGGTCAATCAAGACAGACAGTCAGTTACATAGCAGAACACGTAGTCGGGA 716
Query 539 CTGGTTCCTTTGGCATGGTTTTCCAAGCTAAATGTAGGGAAACTGGGGAGGTTGTTGCTA 598
||||||| || || |||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 717 CTGGTTCATTCGGAATGGTTTTCCAAGCTAAATGCAGAGAAACTGGGGAGGTTGTTGCCA 776
Query 599 TCAAGAAGGTTCTACAAGACAAGCGGTACAAGAACAGAGAGCTACAAATAATGCAGATGC 658
|||| || ||||||||||||||||| |||||||||||||| ||||||| ||||||||||
Sbjct 777 TCAAAAAAGTTCTACAAGACAAGCGTTACAAGAACAGAGAATTACAAATTATGCAGATGC 836
Query 659 TAGACCATCCCAATGTCG-TTGCTTTAAAGCATAG-TTTTTTCTCAAGAACAGACAATGA 716
|||||||||| ||||| | ||| |||||||||||| || | | ||||||||||| |||||
Sbjct 837 TAGACCATCCGAATGTTGTTTG-TTTAAAGCATAGCTTCTAT-TCAAGAACAGAAAATGA 894
Query 717 AGAGGTTTATTTGAATCTTGTCCTTGAATTTGTGCCTGAGACCGTCAATCGTGTTGCAAG 776
|||||||||| | |||||||||||||| ||||| || ||||| ||||||||| ||| ||
Sbjct 895 AGAGGTTTATCTAAATCTTGTCCTTGAGTTTGTTCCCGAGACTGTCAATCGTACTGCCAG 954
Query 777 AAGTTATAGTAGGACGAACCAGCTGATGCCATTGATATACGTTAAACTCTACACCTATCA 836
||| || ||||| | |||||||||||||||||||||||| || ||||||||||| || ||
Sbjct 955 AAGCTACAGTAGAATGAACCAGCTGATGCCATTGATATATGTCAAACTCTACACTTACCA 1014
Query 837 GATTTGCAGGGCGCTTGCTTACATCCATAACTCCTTTGGTCTTTGTCACCGTGATATTAA 896
||||||||||| |||||||||| | ||||| | || ||||||||||||||||||||| ||
Sbjct 1015 GATTTGCAGGGGGCTTGCTTACCTTCATAATTGCTGTGGTCTTTGTCACCGTGATATAAA 1074
Query 897 GCCTCAAAACCTGCTGGTAAACCCACACACGCATCAGCTAAAAATATGTGATTTCGGGAG 956
||| ||||||||||| || || |||||||| |||||||| ||||| |||||||| |||||
Sbjct 1075 GCCCCAAAACCTGCTAGTGAATCCACACACACATCAGCTGAAAATTTGTGATTTTGGGAG 1134
Query 957 AGCAAAAGTGTTGGTAAAAGGAGAACCCAATGTTTCTTACATCTGCTCAAGATACTATCG 1016
|||||||||||||| ||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 1135 TGCAAAAGTGTTGGTGAAAGGAGAACCCAATATTTCTTACATTTGTTCAAGATACTATCG 1194
Query 1017 TGCTCCAGAACTTATTTTTGGTGCCAGTGAATACACAACTGCAATCGATATATGGTCCAC 1076
||| ||||| || |||||||| |||| || |||||||||||||| || |||||||||||
Sbjct 1195 TGCCCCAGAGCTCATTTTTGGAGCCACCGAGTACACAACTGCAATAGACATATGGTCCAC 1254
Query 1077 TGGTTGTGTGATGGCCGAACTACTTCTTGGACAGCCTCTGTTTCCTGGTGAGAGCGGAGT 1136
|||||||||||||| ||||| || ||||||||||||||||||||||| || || |||||
Sbjct 1255 AGGTTGTGTGATGGCTGAACTGCTGCTTGGACAGCCTCTGTTTCCTGGCGAAAGTGGAGT 1314
Query 1137 TGATCAACTTGTTGAAATCATTAAGGTTTTAGGTACACCAACAAGGGAAGAAATCAAGTG 1196
|||||||||||||||||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct 1315 CGATCAACTTGTTGAAATCATAAAGGTTTTGGGTACACCAACAAGGGAGGAGATCAAATG 1374
Query 1197 CATGAATCCAAACTATACAGAATTTAAGTTTCCCCAGATAAAACCTCATCCATGGCACAA 1256
||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 1375 CATGAATCCAAACTACACAGAATTTAAATTTCCTCAGATAAAACCTCATCCTTGGCACAA 1434
Query 1257 GGTGTTCCAAAAACGTTTGCCACCAGAAGCAGTTGATCTTCTTTGTAGGTTCTTCCAGTA 1316
||| ||||| |||||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1435 GGTATTCCAGAAACGTCTGCCACCTGAAGCAGTAGATCTTCTTTGTAGGTTCTTCCAGTA 1494
Query 1317 TTCCCCTAATTTGAGATGTACAGCTTTGGAAGCTTGTATTCATCCGTTATTTGATGAGCT 1376
||| |||||||||||||||||||| ||||||||||||| || || || |||||||||||
Sbjct 1495 TTCTCCTAATTTGAGATGTACAGCGGTGGAAGCTTGTATCCACCCTTTCTTTGATGAGCT 1554
Query 1377 AAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAA 1436
||| |||||||| ||||||| || || ||||| ||||||||||| || ||||| |||||
Sbjct 1555 AAGAGACCCAAATGCTCGTCTGCCAAACGGCCGGCCACTTCCTCCGCTATTCAATTTTAA 1614
Query 1437 ACCGCAAGAGCTATCTGGCATCCCTCCTGAAA-TCGTGAACAGGCTTGTACCAGAGCAAG 1495
||| ||||| || ||||| ||||||||||||| | ||| || | ||||| ||||| || |
Sbjct 1615 ACCACAAGAACTCTCTGGTATCCCTCCTGAAACT-GTGGACCGACTTGTCCCAGAACATG 1673
Query 1496 CCCGTAAGCAGAACCTCTTCATGGC 1520
||||||||||||||| |||||||||
Sbjct 1674 CCCGTAAGCAGAACCACTTCATGGC 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5