BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471101
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09900.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2876 0.0
> AT1G09900.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:3218133-3219929 FORWARD LENGTH=1797
Length=1797
Score = 2876 bits (1557), Expect = 0.0
Identities = 1718/1798 (96%), Gaps = 2/1798 (0%)
Strand=Plus/Plus
Query 1 ATGGATTTGATGGTATCCACAAGCAGTGCTCAAGAAGGGTTTTGCTTGATTCAACAATTT 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTTGATGGTGTCCACAAGCAGTGCTCAAGAAGGGTTTTGCTTGATTCAACAATTT 60
Query 61 CATCGCGAATGTAAACGAGGTAATAAGCTTGACGTCTCAGGTCGTACGACTCGTAGTATT 120
|||||||||| |||||||||||||||||||||||||||| ||||||| || ||||||||
Sbjct 61 CATCGCGAATATAAACGAGGTAATAAGCTTGACGTCTCATGTCGTACTTCTGGTAGTATT 120
Query 121 AGTTCTAAAGTCCCTCTTTGGTCACGAAAAAGGAATCGACTTGTTCTTGTTTCTGCGGCC 180
||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 121 AGTTCTAAAATCCCTCTTGGGTCACGAAAAAGGAATCGACTTGTTCTGGTTTCTGCGGCT 180
Query 181 TCCCAGGTTGAGAGTTCCGGTCTTAACGGTAGAGCTCAAAAGTTCGACACTTTGGCTTCT 240
|| ||||||||||||| |||||||| |||||||||||||||||||| |||||| | |||
Sbjct 181 TCTAAGGTTGAGAGTTCAGGTCTTAATGGTAGAGCTCAAAAGTTCGAAACTTTGTCCTCT 240
Query 241 GGGCATAGCAATAGTAACGGTAATGGTCATT-TCAGCTCTGTGAATTCGTCTTTTGTGTT 299
||| |||||||||||||||| |||||||||| | |||||||||||||||||||||| |||
Sbjct 241 GGGTATAGCAATAGTAACGGAAATGGTCATTAT-AGCTCTGTGAATTCGTCTTTTGCGTT 299
Query 300 GGAAGATGTCGAGAGTAATAACCATTTGCGTCAGCTGGTTAGAACCGGAGAATTGGAGGA 359
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 300 GGAAGATGTCGAGAGTAATAACCATTTGCGTCAGATGGTTAGAACCGGTGAATTGGAGGA 359
Query 360 AGGGTTTAAGTTTCTAGAGAACATGGTTTATCACGGTAATGTTCCTGATATCATTCCCTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 AGGGTTTAAGTTTCTAGAGAACATGGTTTATCACGGTAATGTTCCTGATATCATTCCGTG 419
Query 420 CACGACATTGATCCGTGGATTCTGTAGGATGGGTAAGACGAGGAAAGCTGCTAAGATCTT 479
|||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 420 CACGACATTGATTCGCGGATTCTGTAGGTTGGGTAAGACGAGGAAAGCTGCAAAGATCTT 479
Query 480 GGAGGTTCTTGAAGGCTCTGGTGCTGTTCCTGATGTTATAACTTACAATGTTATGATTAG 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGAGATTCTTGAAGGCTCTGGTGCTGTTCCTGATGTTATAACTTACAATGTTATGATTAG 539
Query 540 TGGGTATTGTAAAGCTGGGGAGATCAATAACGCTTTATCGGTTCTCGATAGAATGAGCGT 599
||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||
Sbjct 540 TGGGTATTGCAAAGCTGGGGAGATCAATAACGCGTTATCTGTTCTTGATAGAATGAGTGT 599
Query 600 TTCGCCGGATGTTGTCACTTATAATACCATCTTGCGTTCTCTTTGCGATAGTGGGAAACT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTCGCCGGATGTTGTCACTTATAATACCATCTTGCGTTCTCTTTGCGATAGTGGGAAACT 659
Query 660 TAAGCAAGCCATGGAGGTTCTTGATAGGATGCTTCAGAGAGACTGTTATCCAGATGTGAT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TAAGCAAGCCATGGAGGTTCTTGATAGGATGCTTCAGAGAGACTGTTATCCAGATGTGAT 719
Query 720 TACTTACACTATATTGATTGAAGCTACTTGCAGAGATAGCGGTGTTGGACAAGCGATGAA 779
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 720 TACTTACACTATATTGATTGAAGCTACTTGCAGAGATAGTGGTGTGGGACATGCGATGAA 779
Query 780 GCTTCTAGATGAGATGAGGGATAGAGGATGTACGCCTGATGTTGTGACTTATAACGTTCT 839
|||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 780 GCTTCTCGATGAAATGAGGGATAGAGGATGTACTCCTGATGTTGTGACTTACAACGTTCT 839
Query 840 TGTGAACGGTATTTGTAAAGAGGGAAGATTGGATGAGGCGATTAAGTTTTTGAATGACAT 899
|||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 840 TGTGAATGGTATTTGTAAAGAGGGGAGATTGGATGAGGCCATTAAGTTTTTGAATGACAT 899
Query 900 GCCATCTTCTGGATGTCAACCGAATGTTATTACACATAACATAATTCTGCGGAGTATGTG 959
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCCGTCTTCTGGATGTCAACCAAATGTTATTACACATAACATAATTCTGCGGAGTATGTG 959
Query 960 TAGTACCGGGAGATGGATGGACGCGGAGAAGCTTCTTGCTGATATGCTTCGTAAAGGCTT 1019
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 960 TAGTACTGGGAGATGGATGGATGCAGAGAAGCTTCTTGCTGATATGCTTCGTAAAGGCTT 1019
Query 1020 TTCGCCAAGTGTTGTCACTTTCAATATCTTGATTAACTTCTTGTGCAGAAAGGGTTTGCT 1079
||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 1020 TTCGCCAAGCGTTGTCACTTTCAATATCTTGATTAATTTCTTGTGTAGAAAAGGTTTGCT 1079
Query 1080 CGGCCGAGCAATTGACATATTGGAGAAAATGCCTAAACATGGATGCCAGCCGAATTCTTT 1139
|||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||||
Sbjct 1080 TGGCCGAGCGATTGACATATTGGAGAAGATGCCTCAACATGGATGTCAGCCGAATTCTTT 1139
Query 1140 GAGTTACAACCCACTGCTTCACGGCTTTTGCAAGGAGAAAAAGATGGATAGGGCTATCGA 1199
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 GAGTTACAACCCGCTGCTTCACGGGTTTTGCAAGGAGAAAAAGATGGATAGGGCTATCGA 1199
Query 1200 GTATTTGGAGAGAATGGTCTCTCGCGGTTGTTACCCAGACATTGTCACCTACAACACTAT 1259
|||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1200 GTATTTGGAGAGAATGGTTTCTCGTGGTTGTTATCCAGACATTGTCACCTACAACACTAT 1259
Query 1260 GCTAACAGCTTTGTGCAAAGATGGGAAAGTTGAAGATGCTGTTGAGATACTTAATCAACT 1319
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1260 GCTAACAGCTTTGTGCAAAGATGGGAAAGTTGAAGATGCGGTTGAGATACTTAATCAACT 1319
Query 1320 TAGTAGCAAGGGATGTTCTCCTGTTCTAATCACTTATAATACTGTCATTGATGGGCTTGC 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TAGTAGCAAGGGATGTTCTCCTGTTCTAATCACTTATAATACTGTCATTGATGGGCTTGC 1379
Query 1380 AAAAGCTGGTAAAACAGGCAAAGCGATAAAACTGCTAGACGAGATGCGTGTGAAAGATTT 1439
||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1380 AAAAGCTGGTAAAACTGGCAAAGCGATAAAACTGCTAGATGAGATGCGTGCGAAAGATTT 1439
Query 1440 AAAGCCTGACACTATCACATATTCCTCTCTTGTTGGAGGTTTAAGCAGGGAAGGAAAGGT 1499
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1440 AAAGCCTGACACTATCACCTATTCCTCTCTTGTTGGAGGTTTAAGCAGGGAAGGAAAAGT 1499
Query 1500 AGACGAAGCCATTAAGTTTTTCCATGAGTTTGAGCGGATGGGTGTTAGGCCAAATGCAGT 1559
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1500 AGACGAAGCCATTAAGTTTTTCCATGAGTTTGAGCGGATGGGCATTAGGCCAAATGCAGT 1559
Query 1560 CACCTTTAATTCTATAATGCTTGGACTCTGCAAGACTCGGCAAACAGATCGTGCCATCGA 1619
||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1560 CACCTTTAATTCTATCATGCTTGGACTCTGTAAGAGTCGGCAAACAGATCGTGCCATCGA 1619
Query 1620 TTTCTTGGTTTATATGATCAACAGAGGGTGTAAACCGACTGAAACATCATACACGATTCT 1679
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1620 TTTCTTGGTTTTTATGATCAACAGAGGGTGTAAACCGAATGAAACATCATACACGATTCT 1679
Query 1680 GATAGAAGGCTTAGCTTATGAAGGTATGGCAAAGGAAGCTCTGGAGCTGCTTAATGAGCT 1739
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1680 GATAGAAGGCTTAGCTTATGAAGGTATGGCAAAGGAAGCTTTGGAGCTGCTTAATGAGCT 1739
Query 1740 TTGTAACAAAGGACTCATGAAGAGAAGCTCTGCTGAGCAAGTTGCAGGGAAGATGTAG 1797
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1740 TTGTAACAAGGGACTCATGAAGAAAAGCTCTGCTGAGCAAGTTGCAGGGAAGATGTAG 1797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88905165195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5