BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471106
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09950.1 | Symbols: RAS1 | RESPONSE TO ABA AND SALT 1 | chr1... 1254 0.0
> AT1G09950.1 | Symbols: RAS1 | RESPONSE TO ABA AND SALT 1 | chr1:3240606-3241632
REVERSE LENGTH=1027
Length=1027
Score = 1254 bits (679), Expect = 0.0
Identities = 863/946 (91%), Gaps = 35/946 (4%)
Strand=Plus/Plus
Query 1 ATGCCAAACACTAGCAGCTCTCAAAGCTTCACTAGT-TTCGTT-ACTGGTTGGTTAATCC 58
|||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||
Sbjct 92 ATGCCAAACACTAGCAGCTCTCAAAGCTTCACTA-TCTTCGTTGA-TGGTTGGTTAATCC 149
Query 59 GTCACAGGTATTTCGTCGAACAGCTTACGTGCGCTTCCCCCTTGGATGAAACTAACCGTA 118
|||||||||||||||| |||||||||| ||| ||||| |||||||||||||||| ||||
Sbjct 150 GTCACAGGTATTTCGTTGAACAGCTTATGTGTGCTTCTTCCTTGGATGAAACTAATCGTA 209
Query 119 TCTCTCTCGAAGATCAACAATCTCTTGTGACCCAGTTTCTTTCTCACTGTCTTCAATACT 178
||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||
Sbjct 210 TCTCTCTCGAAGAACAACAATCTCTCGTGGCCCAGTTTCTATCTCACTGTCTTCAATACT 269
Query 179 ACCAAGAGAAATTCGCCGCCGTTTCCGTCGCCGGTGACAACGTTTTCACGTTCTTCTGCC 238
||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||
Sbjct 270 ACCAAGAGAAATTCGCCTCCGTTTCCCTCGCCGGGGACAACGTTTTCACTTTCTTCTGCC 329
Query 239 CACCGTGGTTTAACTCCTACGCTAAACTCATTCTCTGGGTCGGCGATTTCAAGCCTTCTC 298
|||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 330 CACCGTGGTTTAACTCCTACGCTAAACTTATTTTATGGGTCGGCGATTTCAAGCCTTCTC 389
Query 299 TTGTGTTTAAACTCACCGAGGTCTCCGTGGACAACCTCACGCGCCACCAGAAAGACCGGA 358
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 390 TTGTGTTTAAACTCACCGAGGTCTCCGTGGCCGACCTCACGCGCCACCAGAAAGACCGGA 449
Query 359 TCTCGAGTCTTAAGTCGGAGACTAGGAGGAAAGAGAGAGAAGTGATGCGAGATTTCGCCC 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 450 TCTCGAGTCTTAAGTCGGAGACTAGGAGGAAAGAGAGAGAAGTTATGCGAGATTTCGCCC 509
Query 419 TCGTGCAACAGAGTGTGGCGGATCCGCCGGTGATGCTCGCGGCGAGGAGAGTCGGAGCGG 478
|||||||||| || ||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 510 TCGTGCAACAAAGCGTGGCGGATCCGCCGGTGATGCTCGCGGCGAGGCGCGTGGGAGCGG 569
Query 479 TGGGAATGGTGGACGGAGAAGAAACGGATTTGGAGGAGGCGATGGAGGTGCTTAAAGCTG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TGGGAATGGTGGACGGAGAAGAAACGGATTTGGAGGAGGCGATGGAGGTGCTTAAAGCTG 629
Query 539 GGATGGCGGCGGCGATGAACAACGCAGATCAGCTACGGTGTTCGACGGTGGGGAAAGTGG 598
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 630 GGATGGCGGCAGCGATGAACAACGCTGATCAGCTACGGTGTTCGACGGTGGGGAAAGTGG 689
Query 599 TGGAGATACTTACTCCGCCGCAAGCGATAAAAGTGTTGAAGACAATCGGAGAGCTTCACC 658
||||||| |||||||||||||||||||| |||||||||| |||||||||| |||||||||
Sbjct 690 TGGAGATTCTTACTCCGCCGCAAGCGATTAAAGTGTTGAGGACAATCGGACAGCTTCACC 749
Query 659 TCCGTCTGAGAGAAGTGAATTCGGAGAGAGACCACCAAAGAGCTTAGAAAAGAAGATACT 718
||||||||||||| | ||||| ||| |||||||||| |||| ||||||||
Sbjct 750 TCCGTCTGAGAGA--------C--AGAGA--CCAAGAAAGAGCTTAAAAAAAAAGATACT 797
Query 719 TGCTTTGCTTTGCGT-TGCTTCTTCAACAACAATGGAGTCGTGACTAATTTTTGTGTTTC 777
| |||||||||| | ||||||||||||||| |||||||| | |||||||||||| ||||
Sbjct 798 TAATTTGCTTTGC-TCTGCTTCTTCAACAACGATGGAGTCATCACTAATTTTTGTTTTTC 856
Query 778 GGGGTCATCCACTTGATCCTGAGATTTAGATTTCCTTTTGATGATTTATGATTTTAAAAA 837
||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 857 GGGCTCAACCACTTGATCCTGAGATTTAGATTTCCTTTTGGTGATTTATGATTTTTAAAA 916
Query 838 GATTTGAGAAGAATTGGGCTGTTTTGTTTGTAGTGGTTTAAGTGATATGATGTCTTGTTT 897
|||||||||| ||||||| |||||||||||||| | | || |||||| |||||
Sbjct 917 GATTTGAGAA---TTGGGCTTTTTTGTTTGTAGTG----A--T-AT--GATGTCATGTTT 964
Query 898 TGTTTTATTTTTGGCTTC--GTTTCTTCCTTAAATCAGTTCTAACT 941
| || |||||||||||| |||||||||||||||||||||| |||
Sbjct 965 T-TT--ATTTTTGGCTTCTCGTTTCTTCCTTAAATCAGTTCTTACT 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5