BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471107
Length=1935
Score E
Sequences producing significant alignments: (Bits) Value
AT1G09960.1 | Symbols: SUT4, ATSUT4, SUC4, ATSUC4 | sucrose tra... 2926 0.0
> AT1G09960.1 | Symbols: SUT4, ATSUT4, SUC4, ATSUC4 | sucrose transporter
4 | chr1:3244213-3247200 FORWARD LENGTH=1974
Length=1974
Score = 2926 bits (1584), Expect = 0.0
Identities = 1824/1938 (94%), Gaps = 24/1938 (1%)
Strand=Plus/Plus
Query 8 CTACTCCCGATCAAGATCGCCGCCACAGAGCCACTCGCAACCGTCCACCACTACCTCGAC 67
||||| |||||||||||||||| ||||||| ||||||||||||||||||| || ||||||
Sbjct 50 CTACTTCCGATCAAGATCGCCGTCACAGAGTCACTCGCAACCGTCCACCAATAGCTCGAC 109
Query 68 CCTCTACTTCTTCATCTCGTCCCGTTGTAGCTCCT-C--GATCAAAAGTATCGAAGCGTG 124
||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||
Sbjct 110 CCTCTACTTCTTCATCTCGTCCCGTTGTATCTCCTCCTAGATCAAAAGTTTCGAAGCGTG 169
Query 125 TACTTCTCCGTGTTGCTTCCGTCGCTTGTGGGATTCAATTCGGATGGGCGCTTCAGCTTT 184
| ||||||||||| ||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 170 TGCTTCTCCGTGTAGCTTCCGTCGCATGCGGGATTCAATTCGGATGGGCTCTTCAGCTTT 229
Query 185 CGCTTCTCACACCTTACGTCCAAGAGCTAGGGATTCCACACGCTTGGGCTAGTGTGATTT 244
| || |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 230 CTCTCCTCACACCTTACGTTCAAGAGCTGGGGATCCCACACGCTTGGGCTAGTGTGATTT 289
Query 245 GGCTCTGCGGTCCTCTCTCTGGTTTGTTCGTGCAACCGCTCGTTGGACATAGTAGCGATA 304
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 290 GGCTTTGCGGTCCTCTCTCTGGTTTGTTCGTGCAACCGCTCGTTGGGCATAGTAGCGATA 349
Query 305 GGTGTACTAGCAAGTACGGTCGTCGGAGACCGTTTATTGTCGTTGGAGCTGTGGCGATTG 364
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 350 GGTGTACTAGTAAGTACGGTCGTCGGAGACCGTTTATTGTCGCCGGAGCTGTGGCGATTT 409
Query 365 CTATCTCTGTTTTGGTTATTGGTCATGCGGCGGATATTGGATGGGCTTTTGGGGATAGAG 424
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 410 CTATCTCTGTTATGGTTATTGGTCATGCGGCGGATATTGGATGGGCATTTGGGGATAGAG 469
Query 425 AAGGGAAGATTAAGCCGAGGGCGATTGTGGCTTTTGTTTTAGGGTTTTGGATTCTTGATC 484
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 470 AAGGGAAGATTAAGCCGAGGGCGATTGTTGCTTTTGTTTTAGGGTTTTGGATTCTTGATG 529
Query 485 TTGCTAATAACATGACTCAAGGTCCTTGTAGAGCTCTCCTCGCCGATCTTACTGAGAATG 544
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 530 TTGCTAATAATATGACTCAAGGTCCTTGTAGAGCTCTCCTTGCTGATCTTACTGAGAATG 589
Query 545 ATAATCGCAGAACCCGAGTGGCAAATGGCTATTTCTCTCTGTTTATGGCTATTGGCAATG 604
||||||||||||||||||| ||||||||||| |||||||| ||||||||| |||||||||
Sbjct 590 ATAATCGCAGAACCCGAGTTGCAAATGGCTACTTCTCTCTCTTTATGGCTGTTGGCAATG 649
Query 605 TTCTTGGTTATGCTACTGGATCATTCAATGGTTGGTACAAGATCTTCACTTTTACGAAGA 664
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 650 TTCTTGGCTATGCTACTGGATCATACAATGGTTGGTACAAGATCTTCACTTTTACGAAGA 709
Query 665 CAGTTGCATGTAATGTGGAATGTGCCAATCTCAAGTCTGCTTTCTACATAGATGTCGTCT 724
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 710 CAGTTGCATGTAATGTGGAATGTGCCAATCTCAAGTCTGCCTTCTACATAGATGTTGTCT 769
Query 725 TTATTGCAATAACTACGATCCTAAGCGTCTCAGCGGCTCATGAGGTGCCTCTTGCTTCAT 784
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 770 TTATTGCAATAACTACGATCCTAAGCGTCTCAGCGGCTCATGAGGTGCCACTTGCTTCAT 829
Query 785 TGACTTCTGAAGCACATGGGCAAACCAGTGGAACAGACGAAGCTTTTCTTTCTGAAATAT 844
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 830 TGGCTTCTGAAGCACATGGGCAAACCAGTGGAACAGACGAAGCTTTTCTTTCTGAGATAT 889
Query 845 TTGGAACTTTCAGATATTTTCCAGGGAATGTTTGGATAATCTTGCTTGTTACAGCATTGA 904
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 890 TTGGAACTTTCAGATATTTTCCAGGAAATGTTTGGATAATCTTGCTTGTTACAGCATTGA 949
Query 905 CATGGATTGGTTGGTTTCCATTTATTCTGTTTGATACTGACTGGATGGGTCGAGAGATCT 964
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 950 CATGGATTGGTTGGTTTCCATTTATTCTGTTTGATACTGATTGGATGGGTCGAGAGATCT 1009
Query 965 ATGGCGGTGAACCGAACATAGGTACTTCTTATAGTGCCGGAGTTAGTATGGGCGCTCTTG 1024
|||||||||||||||||||||| ||||| |||||||| || || |||||||| || ||||
Sbjct 1010 ATGGCGGTGAACCGAACATAGGGACTTCATATAGTGCTGGGGTCAGTATGGGTGCACTTG 1069
Query 1025 GTTTGATGTTGAATTCTGTTTTTCTTGGAATCACTTCGGTGCTCATGGAGAAGCTTTGCA 1084
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1070 GTTTGATGTTGAATTCTGTTTTTCTTGGAATCACTTCTGTGCTCATGGAGAAACTTTGCA 1129
Query 1085 GAAAGTGGGGGGCTGGTTTTGTTTGGGGAATATCAAATATCTTAATGGCTATTTGCTTTC 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 GAAAGTGGGGGGCTGGTTTTGTTTGGGGAATATCAAATATCTTAATGGCTATTTGCTTTC 1189
Query 1145 TTGGAATGATTATCACCTCATTTGTTGCGTCTCATCTTGGCTACATTGGCCATGAACAAC 1204
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1190 TTGGAATGATAATCACCTCATTTGTTGCGTCTCACCTTGGCTACATTGGCCATGAACAAC 1249
Query 1205 CTCCTGCCAGCATCGTATTTGCTGCTGTGTTAATCTTTACAATTCTGGGCATTCCATTGG 1264
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 CTCCTGCCAGCATCGTGTTTGCTGCTGTGTTAATCTTTACAATTCTGGGCATTCCATTGG 1309
Query 1265 CAATAACTTACAGTGTCCCATATGCGTTGATTTCCATACGTATAGAATCTTTGGGCCTAG 1324
| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1310 CGATAACTTACAGCGTCCCATATGCGTTGATTTCCATACGTATTGAATCCCTGGGCTTAG 1369
Query 1325 GTCAAGGCTTATCTTTGGGTGTGCTGAATTTGGCGATAGTCATCCCACAGGTAATTGTGT 1384
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1370 GTCAAGGCTTATCTTTGGGTGTGCTAAATTTGGCGATAGTCATCCCACAGGTAATTGTGT 1429
Query 1385 CTGTTGGCAGTGGCCCATGGGATCAACTGTTTGGAGGTGGGAATTCACCGGCGCTTGCAG 1444
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1430 CTGTTGGCAGTGGCCCATGGGATCAACTGTTTGGAGGTGGGAATTCACCGGCACTTGCAG 1489
Query 1445 TAGGAGCAGCTGCAGGTTTCATTGGTGGAATTGTAGCCATCTTGGCTCTTCCCCGAACAA 1504
||||||||||| |||| |||||||| ||||||||||| |||||||||||||| || ||||
Sbjct 1490 TAGGAGCAGCTACAGGCTTCATTGGCGGAATTGTAGCTATCTTGGCTCTTCCACGGACAA 1549
Query 1505 GGATTCAGAAGCCCATCCCTCTCCCATGACATCCTCTCTTTTGTTATAAGGTAAGATGAG 1564
||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||
Sbjct 1550 GGATTCAGAAGCCCATCCCTCTCCCATGAGATTCTCTCTTTTGTTATA---TAAGATGAG 1606
Query 1565 TTTCAAGCGAGGAACGCATAAGGGGAGTACT-GGAAAATGGCAAGGAGATGGAACACTTA 1623
| |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 1607 TGTCAAGCGAGGAACGCATAAGGGGAGTGCTTGGAAA-TGGCAAGGAGATGGAACACTTA 1665
Query 1624 ATGTGATCCTTGTCGAA--TTCATGCAATGGCTTCTCGTGTGACTTAACTTATTTGCAGC 1681
||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1666 ATGTGATCCTTGTCGAAAATTCGTGCAATGGCTTCTCGTGTGACT-AACTTATTTGCAGC 1724
Query 1682 TACTAGGACTTAATCTCCTCTACTTTGGGGACTATGATCCTTGTATCCACGAGG-AGCCA 1740
||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 1725 TACTAGGACTTAATCCCCTCTACTTTGGGGACTATGATCCTTGTATACACGAGGCA-CCA 1783
Query 1741 TATAACCAATGAAA-TAAAACATCATTCAGTTTGTGAGGTATATGCAT-TCTCCTTTGTT 1798
|| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1784 TAGAACCAATGAAAATAATACATCATTCAGTTTGTGAGGTATATGCATCTCTCCTTTATT 1843
Query 1799 GGAAGTCCCAATTCGGGATCTTCTCtgtttttgttgttgttgttgtAACTTAATGTGAAA 1858
|||||| ||| ||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 1844 GGAAGTTCCAGTTCGGGATCTTCTCTGTTTTTTTTGTTGTTGTTGTAAATTAATGTAAAA 1903
Query 1859 ACCTGTGTGCAATGGAGAGTTTGTAATGACCCCTGAATTCCAGGGTTCTGTAACTGTT-A 1917
|||||||| ||| ||| |||||||| | ||||||| | ||||||||||||| |
Sbjct 1904 ACCTGTGTACAACAGAGTGTTTGTAAGGGCCCCTGA------G--TTCTGTAACTGTTTA 1955
Query 1918 TAAAGTTCATTTTCTTTA 1935
||||||||||||||||||
Sbjct 1956 TAAAGTTCATTTTCTTTA 1973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95832840405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5