BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471112
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10010.1 | Symbols: AAP8, ATAAP8 | amino acid permease 8 | c... 1260 0.0
> AT1G10010.1 | Symbols: AAP8, ATAAP8 | amino acid permease 8 |
chr1:3265976-3268726 FORWARD LENGTH=1428
Length=1428
Score = 1260 bits (682), Expect = 0.0
Identities = 745/776 (96%), Gaps = 2/776 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGCATACCACAATCCTTCGGCGGTGGAGTCGGGTGACACCGCCGTGAAAGGCGTC 60
||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 1 ATGGACGCATACAACAATCCCTCGGCGGTGGAGTCGGGTGACGCCGCCGTGAAAAGCGTC 60
Query 61 GACGACGATGGTCGAGAGAAGAGAACGGGGACGTTTAT-GACGGCGAGTGCGCACATAAT 119
||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct 61 GACGACGATGGTCGAGAGAAGAGAACGGGAACATTT-TGGACGGCGAGTGCGCACATAAT 119
Query 120 CACGGCGGTGATAGGCTCCGGGGTGCTGTCGTTGGCTTGGGCTTTAGCACAGCTTGGTTG 179
||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 CACGGCGGTCATAGGCTCAGGGGTGCTGTCGTTGGCTTGGGCTATAGCACAGCTTGGTTG 179
Query 180 GGTGGCAGGAACCATAATTTTGGTCGCTTTCGCCATCATTACTTACTACACCTCCACCAT 239
|||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 180 GGTGGCAGGAACCACAGTTTTGGTCGCTTTCGCCATCATTACTTACTACACGTCCACCTT 239
Query 240 GCTCGCCGACTGTTACCGTTCGCCGGACCCCATCAACGGAACACGCAACTATAATTACAT 299
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 240 GCTCGCCGACTGTTACCGTTCGCCGGACTCCATCACCGGAACACGCAACTATAATTACAT 299
Query 300 GGGCGTCGTCCGAACTTACCTTGGGGGTAAAAAGGTTCAGCTATGTGGACTGGCACAGTA 359
||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 300 GGGCGTCGTCCGATCTTACCTTGGTGGTAAAAAGGTTCAGCTATGTGGAGTGGCACAGTA 359
Query 360 CGTGAATCTCGTAGGGGTCACTATTGGTTACACCATCACTGCCTCCATAAGCTTAGTAGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGTGAATCTCGTAGGGGTCACTATTGGTTACACCATCACTGCCTCCATAAGCTTAGTAGC 419
Query 420 GATTGGGAAATCAAATTGTTATCATGACAAGGGACATAAAGCGAAATGTTCTGTATCGAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATTGGGAAATCAAATTGTTATCATGACAAGGGACATAAAGCGAAATGTTCTGTATCGAA 479
Query 480 TTATCCGTACATGGCGGCATTTGGGATCATCCAGATTATTCTGAGCCAGCTTCCTAATTT 539
|||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||
Sbjct 480 TTATCCATACATGGCGGCATTTGGGATCGTCCAGATCATTCTGAGCCAGCTTCCTAACTT 539
Query 540 TCACAAGCTCTCTTTCCTCTCCATCATCGCCGCGGTTATGTCCTTCTCTTATGCGTCTAT 599
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCACAAGCTCTCTTTCCTATCCATCATCGCCGCGGTTATGTCCTTCTCTTATGCGTCTAT 599
Query 600 TGGAATAGGCCTAGCCATCGCCACTGTAGCAAGTGGGAAGATTGGTAAGACAGAATTGAC 659
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGGAATAGGCCTAGCCATCGCTACTGTAGCAAGTGGGAAGATTGGTAAGACAGAATTGAC 659
Query 660 AGGCACAGTGATAGGTGTGGACGTAACTGCGTCTGAAAAAGTTTGGAAATTGTTTCAAGC 719
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGGACAGTGATAGGTGTGGACGTAACTGCGTCTGAAAAAGTTTGGAAATTGTTTCAAGC 719
Query 720 GATTGGAGACATTGCCTTTTCATATGCTTTTACCACTATTCTCATCGAGATTCAGG 775
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 GATTGGAGACATTGCCTTTTCATACGCTTTTACCACTATTCTCATCGAGATTCAGG 775
Score = 1074 bits (581), Expect = 0.0
Identities = 632/657 (96%), Gaps = 2/657 (0%)
Strand=Plus/Plus
Query 809 AGGACACATTGAGATCAAGCCCACCAGAGAACAAAGTGATGAAACGAGCGAGTCTTGCCG 868
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 773 AGGACACATTGAGATCAAGCCCACCAGAGAACAAAGTGATGAAACGAGCAAGTCTTGTCG 832
Query 869 GGGTCTCAACCACAACTGTTTTCTACATCTTGTGTGGTTGCATCGGATATGCTGCATTCG 928
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 833 GAGTCTCAACCACAACTGTTTTCTACATCTTGTGTGGTTGCATCGGATATGCTGCGTTCG 892
Query 929 GGAACCAAGCCCCTGGTGACTTCCTTACTGATTTTGGTTTTTACGAACCTTATTGGCTCG 988
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 893 GCAACCAAGCCCCTGGTGACTTCCTTACCGATTTTGGTTTTTACGAACCTTATTGGCTCA 952
Query 989 TCGACTTTGCCAATGCTTGCATTGCTCTCCATCTTATCGGTGCCTATCAGGTGTACGCGC 1048
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 953 TCGACTTTGCCAATGCTTGCATTGCTCTCCATCTAATAGGTGCCTATCAGGTGTATGCGC 1012
Query 1049 AGCCGTTTTTCCAGTTTGTTGAGGAGAACTGCAACAAAAAATGGCCTCAAAGCAATTTCA 1108
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1013 AGCCGTTTTTCCAGTTTGTTGAGGAAAACTGCAACAAAAAATGGCCTCAAAGCAATTTCA 1072
Query 1109 TCAACAAAGAATACTCGTCAAACATACCTTTGCTTGGAAAATGTCGTGTCAACCTCTTCA 1168
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1073 TCAACAAAGAATACTCGTCAAAGGTTCCTTTGCTTGGAAAATGTCGTGTCAACCTCTTCA 1132
Query 1169 GACTGGTTTGGAGAACATGCTATGTGGTTTTGACAACATTTGTAGCAATGATATTCCCCT 1228
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1133 GACTGGTTTGGAGGACATGCTATGTTGTTTTGACAACATTTGTAGCAATGATATTCCCCT 1192
Query 1229 TCTTCAATGCGATCTTGGGTTTGCTTGGGGCACTCGCGTTCTGGCCACTCACAGTTTATT 1288
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1193 TCTTCAATGCGATCTTGGGTTTGCTAGGGGCATTCGCGTTCTGGCCACTCACAGTTTATT 1252
Query 1289 TTCCGGTGGCAATGCACATTGCGCAGGC-AAAGGTCAAGAAGTATTCTCGTAGATGGTTG 1347
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1253 TTCCGGTGGCAATGCACATTGCGCAGGCTAAA-GTCAAGAAGTATTCTCGTAGATGGTTG 1311
Query 1348 GCCTTGAACCTCCTCGTATTGGTTTGCTTGATCGTCTCAATCCTTGCCGCGGTAGGATCC 1407
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1312 GCCTTGAACCTCCTCGTATTGGTTTGCTTGATCGTCTCGGCCCTTGCCGCCGTAGGATCC 1371
Query 1408 ATCATTGGCTTAATAAATAGTGTCAAGTCATACAAGCCCTTCAAGAATTTAGACTAG 1464
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 ATCATTGGCTTAATTAATAGTGTCAAGTCATACAAGCCCTTCAAGAATTTAGACTAG 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72188383710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5