BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471114

Length=629
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10030.1 | Symbols: ERG28 | homolog of yeast ergosterol28 | ...   769    0.0  


> AT1G10030.1 | Symbols: ERG28 | homolog of yeast ergosterol28 
| chr1:3273825-3275837 FORWARD LENGTH=743
Length=743

 Score =  769 bits (416),  Expect = 0.0
 Identities = 501/538 (93%), Gaps = 21/538 (4%)
 Strand=Plus/Plus

Query  90   AGATGAAGGCGTTAGGGTATTGGTTAATGGTGGTTGGTTCACTGAGACTAGCTTCTGTTT  149
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  146  AGATGAAGGCGTTGGGGTATTGGTTAATGGTGGTTGGTTCACTGAGACTAGCTTCTGTTT  205

Query  150  GGTTTGGTTTCTTCAACATTTGGGCTCTTCGTCTCGCTGTCTTCTCTCAGACCACCATGA  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  206  GGTTTGGTTTCTTCAACATTTGGGCTCTTCGTCTCGCTGTCTTCTCTCAGACCACCATGA  265

Query  210  GTGAAGTTCATGGACGTACATTCGGAGTATGGACACTCTTGACCTGCACTCTCTGCTTTC  269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  266  GTGAAGTTCATGGACGTACATTCGGAGTATGGACACTCTTGACCTGCACTCTCTGCTTTC  325

Query  270  TTTGTGCATTCAACCTCGAAAACAAACCATTATATTTGGCTACCTTCCTATCATTTATCT  329
            |||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct  326  TTTGTGCATTCAACCTCGAAAACAAACCATTATACTTGGCTACGTTTCTATCATTTATCT  385

Query  330  ATGCCTTAGGCCATTTTCTGACCGAATACCTCTTTTACCAAACAATGACTATCGCGAATC  389
            |||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  386  ATGCGTTAGGCCATTTTCTGACTGAATACCTCTTTTACCAAACAATGACCATCGCGAATC  445

Query  390  TCTCAACTGTGGGCTTCTTTGCAGGCACATCGATTGTCTGGATGCTCTTGGAGTGGAATT  449
            ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  446  TCTCAACTGTGGGCTTCTTTGCAGGTACATCGATTGTGTGGATGCTCTTGGAGTGGAATT  505

Query  450  CCCTTGAACAACCACACTCCAAATTTTATTGATGTTAGTCCG-------G-----A--TC  495
            ||||||||||||||||||||||| ||| |||||||||||||        |     |  ||
Sbjct  506  CCCTTGAACAACCACACTCCAAACTTTCTTGATGTTAGTCCACATCTATGTTTCTAAGTC  565

Query  496  -CT--T-TTA-A-GCTTTTCTAAAAGTTGGAATCATCTGAGTTTTTTGCTCGATCCCTAA  549
             ||  | ||| | |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct  566  TCTCGTCTTATAAGCTTTTCTAAAAGTGGGAATCATCTGAGTTTTT-GCTCGATCCCTAA  624

Query  550  AGCTGTTGATTCATTGTATCATCTAAATCTTTTGACATCTTTGATGGAGTCTTGAACT  607
            ||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||
Sbjct  625  AGCTGTTGATTCATTGTTTCATCTAAATCTTACGACATCTTTGATGGAGTCTTGAACT  682



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30341424788


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5