BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471117
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10040.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2211 0.0
> AT1G10040.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:3275891-3278697 REVERSE LENGTH=1689
Length=1689
Score = 2211 bits (1197), Expect = 0.0
Identities = 1541/1693 (91%), Gaps = 80/1693 (5%)
Strand=Plus/Plus
Query 1 ATCTCAGATGTGTAAGAAAGAAAATGTCAATGGCGTTTCAACGACGACAAC-AATACTGC 59
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1 ATCTCAGATGTGTAAGAAAGAAAATGTCAATGGCGTTTCAACGACGACAACAAATACTTC 60
Query 60 GGTGGGGACCTTCCCTAACGACTGAAACTATTCTCTGTTTCTCTCTGACCATTTGAACTT 119
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTGGGGACTTTCCCTAACGACTGAAACTATTCTCTGTTTCTCTCTGACCATTTGAACTT 120
Query 120 TTGATGTTTCAAGTC--T---AA--T---------C-T----TCTTCCCAAAGTGGCGA- 157
||||||||| ||||| | || | | | |||||||||||||||||
Sbjct 121 TTGATGTTTGAAGTCTATAAAAACCTACGCGAGACCTTCGAATCTTCCCAAAGTGGCGAC 180
Query 158 CTATGAATTAAAC-CCTGCTTAAAGTTTCC------C-TTTTTCGTTTCGTGATCATGGA 209
|| |||||| ||| ||||| |||||||||| | || |||||||||||||||||||
Sbjct 181 CT-TGAATT-AACACCTGCATAAAGTTTCCATTTTTCATTCTTCGTTTCGTGATCATGGA 238
Query 210 GGAAGAAGATAGCGTGATAAC-AAGAAACACAGAAGAAGATGTGCGTGTTGGAAGTGATC 268
|||||||||||||||||| | ||| || ||||||| ||||| |||||||||||||||||
Sbjct 239 GGAAGAAGATAGCGTGATTCCTAAG-AATACAGAAGGAGATGGGCGTGTTGGAAGTGATC 297
Query 269 TTGAAGGAAT-CGATGGGTCAAAAaagaagatgaagataatgaagacgatgagaagcggg 327
|||||||||| || | | | ||||||||| | || | | | |||||||||| ||
Sbjct 298 TTGAAGGAATCCG-TAAG-C--CAAAGAAGAT---G--AA-G-A-A-GATGAGAAGCAGG 344
Query 328 aagagtgatgataaagagacgaagaagaagaag---aagTATTGGATGGGTTGTCTCAGA 384
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 345 AAGAGTGATGATAAAGAGACGAAGAAGAAGAAGAAAAAGTATTGGATGGGTTGTCTCAGA 404
Query 385 GCTGAATCTGACGAGAGTGGAAACGTCGATTTGACTGTTGATTTCCCTGGCGAACGCACT 444
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GCTGAATCAGACGAAAGTGGAAACGTCGATTTGACTGTTGATTTCCCTGGCGAACGCACT 464
Query 445 GAGCCAACTCACCTAGTCGTCATGGTCAACGGTCTCATCGGCAGTGCTCAGAATTGGAGA 504
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GAGCCGACTCACCTAGTCGTCATGGTCAACGGTCTCATCGGCAGTGCTCAGAATTGGAGA 524
Query 505 TTCGCTGCTAAGCAGATGCTAAAGAAGTATCCTCAGGATCTCGTAGTTCACTGCAGTAAA 564
||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 525 TTCGCCGCTAAGCAGATGCTTAAGAAGTATCCTCAGGATCTCCTCGTTCACTGCAGTAAA 584
Query 565 CGCAACCATTCAACACAGACATTTGATGGTGTTGATGTTATGGGAGAAAGATTAGCTGAA 624
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CGCAACCATTCCACACAGACATTTGATGGTGTTGATGTTATGGGAGAAAGATTAGCTGAA 644
Query 625 GAGGTTAGGTCGGTGATCAAACGTCACCCAAGTCTTCAGAAGATTTCCTTTGTAGGACAT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GAGGTTAGGTCGGTGATCAAACGTCACCCAAGTCTTCAGAAGATTTCCTTTGTAGGACAT 704
Query 685 TCTTTAGGTGGCTTGATTGCTAGGTATGCTATTGGGCGTCTTTATGAG-AAGAAAACCCG 743
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 705 TCTTTAGGTGGCCTGATTGCTAGGTATGCTATTGGGCGTCTTTATGAGCAAGAAT-CCCG 763
Query 744 AGAAGAGCTTCTACGTAACAGTGACGACATTGGTGATACATGCCCGATAGAGGAACCGAA 803
||||||||||| || ||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct 764 AGAAGAGCTTCCACATAATAGTGACGACATTGGTGATAAATGCTCGATAGAGGAACCGAA 823
Query 804 AG-AGAGAATCGCCGGATTGGAGCCCATGTATTTTATAACTTCTGCAACGCCACACCTTG 862
|| | |||||||| ||||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct 824 AGCA-AGAATCGCTGGATTAGAGCCTGTGTATTTTATAACTTCTGCAACACCACACCTTG 882
Query 863 GTTCAAGAGGACATAAACAGGTCCCATTGTTTTCTGGATCTCACACTTTGGAGAGATTAG 922
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 883 GTTCAAGAGGACATAAACAGGTCCCATTGTTTTCTGGATCTTACACTTTGGAGAGATTAG 942
Query 923 CTACGCGTATGTCGGGGTGTCTTGGTAAAACGGGAAAACATCTTTTTCTGGCTGATAGTG 982
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 CTACGCGTATGTCGGGTTGTCTTGGTAAAACGGGAAAACATCTTTTTCTGGCTGATAGTG 1002
Query 983 ATGGTGGAAAACCTCCATTACTCCTCCGAATGGTTAAAGATTCTAAAGATCTTAAATTCA 1042
|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1003 ATGGTGGAAAGCCTCCATTACTCCTCCGGATGGTTAAAGATTCTAGAGATCTTAAATTCA 1062
Query 1043 TTTCTGCTTTGCAATGCTTCAAACGGCGTATTGCTTACGCGAATACAAGTTTCGACCACC 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TTTCTGCTTTGCAATGCTTCAAACGGCGTATTGCTTACGCGAATACAAGTTTCGACCACC 1122
Query 1103 TTGTCGGGTGGAGTACATCGTCTATCCGGCGTCACATTGAGCTTCCTAAGCTTCAACGTG 1162
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1123 TTGTTGGGTGGAGTACATCGTCTATCCGGCGTCACAATGAGCTTCCTAAGCTTCAACGTG 1182
Query 1163 GTCCAGTCAACGAGAAGTATCCTCACATTGTGAACGTTGAAGCACCAGATACTGCAAGTA 1222
|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1183 GTCCAGTCAATGAGAAGTATCCTCACATTGTGAATGTTGAAGCACCGGATACTGCAAGTA 1242
Query 1223 ACCATAAGGAAGATCGTTCAAGGACCAGTTCAGACGAG-TTCAAGAATTTCGATATGGAA 1281
|| || ||||||||| ||||||||||| ||||| || |||||||| || |||||||||
Sbjct 1243 ACTATGAGGAAGATCATTCAAGGACCAAAGCAGAC-AGGTTCAAGAACTTAGATATGGAA 1301
Query 1282 GAGGAGATGATAAGTGAACTAACAAAACTGAGCTGGGAACGAGTTGATGTTAGTTTCAGA 1341
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GAGGAGATGATAAGAGAATTAACAAAACTGAGCTGGGAACGAGTTGATGTTAGTTTCAGA 1361
Query 1342 GGAACCCTGCAAAGATTTTTCGCTCACAATACCATTCAGGCAAGTGAAAACAAAGATGAT 1401
||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1362 GGAACGCTGCAAAGATTTCTCGCTCACAATACCATTCAGG----TGAAAACAAAGATGAT 1417
Query 1402 CAATTCAGCTGGAGCAGATGTTATACAACACATGATTGACAATTTTGAGCCATAGGTTTG 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1418 CAATTCAGCTGGAGCAGATGTTATACAACACATGATTGACAATTTTGAGCCATAGGTGTG 1477
Query 1462 AAT----A-ATTATCGGAAGATGGCAAGTTCCTTCACAAGTCAAAAATTCACTAGGAGAA 1516
| | | || | |||||||||||||| |||||||||||| ||| ||||||||| |||
Sbjct 1478 ACTTGTGAGATAA-CGGAAGATGGCAAGCTCCTTCACAAGTTAAA--TTCACTAGGGGAA 1534
Query 1517 ATATATCAGTCATATTATCAAAATTCTGTCATCTAGTAATGTATGTTACTATACTATTAG 1576
||| || ||||||||||||| ||||||||||||||||||||| | || || ||||||||
Sbjct 1535 ATACATTAGTCATATTATCACAATTCTGTCATCTAGTAATGT-TACTA-TACACTATTAG 1592
Query 1577 TAGGTTTATCTGTTTTGTTAGTT-TT-TCAGTTACCGGaaaaaaaGAAGGAAAATAGAA- 1633
||||||||||||||||||||| | || ||||||||||| |||| | | |||||||||
Sbjct 1593 TAGGTTTATCTGTTTTGTTAGCTGTTCTCAGTTACCGGGAAAAT-G--G-AAAATAGAAT 1648
Query 1634 CTATTTTGGATAC 1646
| |||||||||||
Sbjct 1649 C-ATTTTGGATAC 1660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81324882900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5