BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471130
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10150.1 | Symbols: | Carbohydrate-binding protein | chr1:3... 2320 0.0
AT1G59510.1 | Symbols: CF9 | Carbohydrate-binding protein | chr... 412 4e-114
> AT1G10150.1 | Symbols: | Carbohydrate-binding protein | chr1:3325824-3327614
FORWARD LENGTH=1791
Length=1791
Score = 2320 bits (1256), Expect = 0.0
Identities = 1616/1775 (91%), Gaps = 84/1775 (5%)
Strand=Plus/Plus
Query 1 TCTCTCTCTTCCAGACTTTCTTGAATCTCTCCTCTCACCTCACACGCCAATTTCATTTTC 60
|||||||||||||| |||||||||| | |||||||||| ||||||||||||||||||
Sbjct 37 TCTCTCTCTTCCAGCCTTTCTTGAA----T-CTCTCACCTCTCACGCCAATTTCATTTTC 91
Query 61 ATGCATCGCTATTTCCCCTTA------TCTTCTTCTTCTTATCTCCTAACTAAATTATCT 114
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 92 ATGCATCGCTATTTCCCCTTATCTTCTTCTTCTTCTTCTTATCTCCCAACTAAATTATCT 151
Query 115 GTCTCCATTCATGTTATGGTCAACAAACAACAGAATCTGAATCCTC-TTTCCCCATTTCC 173
||||||||||||||||| | | ||||||||||||||||||| | ||||||||||| |
Sbjct 152 GTCTCCATTCATGTTATTATGGTC-AACAACAGAATCTGAATCC-CATTTCCCCATTTTC 209
Query 174 GGATCAC---AA-TAACAAACCCTAGATTTCTATC--TA-----T--A-----------G 209
||||||| || |||||||||||||||||||||| || | | |
Sbjct 210 GGATCACAATAACTAACAAACCCTAGATTTCTATCTATAGTCCTTCGATCTGTTTCTGTG 269
Query 210 --TCCTTAAAGCTGTGATTTTTGCAATTGGATTTTTTCAGATTCGATCGATTAATTCTG- 266
|||||||||||||||||||||||||||| ||| | |||||||||| ||||||| ||
Sbjct 270 TCTCCTTAAAGCTGTGATTTTTGCAATTGGGGTTTGTGAGATTCGATCAATTAATTGTGT 329
Query 267 TTGTTGAATGGACCTTCTTCGATTGAGCGAAAAGGGTATCTTTTTATCTCAGAGAAGAAG 326
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 330 TTGTTGAATGGACCTTCTTCGATTGAGAGAAAAGGGTATATTTTTATCTCAGAGAAGAAG 389
Query 327 GAAATGGCTGATTTTTATGGCGATTTCTGGTGTTTCTGGCTTTGGAGCTTACAAGGTTTA 386
|||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct 390 GAAATGGCTGATTTTTATGGCGATCTCTGGAGTTTCTGGCTATGGAGCTTACAAGGTTTA 449
Query 387 TCATTTACCATCTGTCGCGAGAAAAAGGAAGCGTCTTTTTAAGCTTTTCGGAGCCATTGT 446
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TCATTTGCCATCTGTTGCCAGAAAAAGGAAGCGTCTTTTTAAGCTTTTCGGAGCCATTGT 509
Query 447 CTCTGTTGCTGAATTGATCTCTGATTCAGCCGAGACCTTAAGTATCGTGTCACGAGACTT 506
|||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||| |
Sbjct 510 CTCTGTAGCTGAATTGATCTCTGATTCAGCTGAGACCTTAAGTATGGTATCACGAGACGT 569
Query 507 GAAGGGCTTTCTCAATTCAGATTCAGATGAAATCCCTAATAGCTTGAAGCAGATCGCGAA 566
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 570 GAAGGATTTTCTCAATTCAGATTCAGATGAAATCCCTAACAGCTTGAAGCAGATCGCGAA 629
Query 567 GATCACAACGTCGAATGAGTTTACGGATTCGCTTTCTAGGGTTTCTCAGGCTGTGACGAT 626
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 630 GATCACAACTTCGAATGAGTTTACGGATTCGCTTTCTAGGGTTTCTCAGGCTGTGACTAT 689
Query 627 TGGTGCCTTTCGTGGGTACAAATCCGAATCGTCTAGTAACAACGTTGGTGATTCAGGAAT 686
||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 690 TGGTGCCTTTCGTGGGTACAAATCCGAATCGTC---T----A--TTGGTGATTCAGGAAT 740
Query 687 TGAG-AA-GA--A-A-TC--G-GAT-TCG--AGTGTTCTTGATAAGGTTTTCTCAGAGGC 734
|||| || | | | || | | | | | || || ||||||||||||||||||||||
Sbjct 741 TGAGAAATCATCAGACTCGAGTGTTGTTGATAGAGTGATTGATAAGGTTTTCTCAGAGGC 800
Query 735 TGGGACTGGGTTTGTTTCTGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGGTT 794
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 801 TGGAACTGGTTTTGTTTCAGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGATT 860
Query 795 TTACTCTGGTAAGCTCGAGAGTGGTGTGAAATGTGAGGGTTCTGATTCTTCAGAGACACC 854
||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 861 TTACTCTGGTAAGGTAGAGAGTGGTGTGAAATGTGAGGGTTCTGATTCTTCTGAGACACC 920
Query 855 TAAATGGGTGAATTTGCTTTGTGATGATAAGTGTAGAGAGCTTTTAGCTGTTTGTATTGA 914
|| |||||||| ||||||| ||||||| |||||||||||||||||||||| |||||||||
Sbjct 921 TAGATGGGTGACTTTGCTTGGTGATGACAAGTGTAGAGAGCTTTTAGCTGATTGTATTGA 980
Query 915 GAGATTCACCAGCACTGCGATTGGTGTGTATCTTGACAAGACGATGGATATCAATACTTA 974
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 981 GAGATTCACCAGCACTGCAATTGGTGTGTATCTTGACAAGACGATGGATATCAATACTTA 1040
Query 975 TGATCAAATCTTTGAAGGCTTGACGAATCCGAAACATCAGGATAGTGTCAAAGACGTTCT 1034
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1041 TGATCAAATCTTTGAAGGCTTGACGAATCCGAAACATCAGGATAGTGTCAAGGACGTTCT 1100
Query 1035 TGTTTCGGTTTGTAATGGTGCTCTTC-AGACTATTGTTAGGACATCTCACGAAGTGTTTA 1093
||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 1101 TGTTTCGGTTTGTAACGGTGCTCT-CGAGACTATTGTTAGGACATCTCACGACGTGTTTA 1159
Query 1094 CATCTTCAAGGTCTAAGAATGTGATAGAAGAGATTGAAGATGACGATTTCAAGAGTAATG 1153
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1160 CATCTTCAAGGTCTAAGAATGTGATAGAAGAGATCGAAGATGATGATTTCAAGAGTAATG 1219
Query 1154 GTTCCGCGAGAAGCAAGATGGTTTCGGAATCAGGAGATGGGATCAAGAGTAATGGGTGGA 1213
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1220 GTTCCGCGAGAAGCAAGATGGTTTCGGAATCAGGAGATGGGGTCAAGAGTAATGGGTGGA 1279
Query 1214 CTGAGGCTATCACAACTACATTGGCAGTTCCGAGCAATCGGAGGTTTATGTTCGATGTAA 1273
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1280 CTGAGGCTATTGCAACTACATTGGCAGTTCCGAGCAATCGGAGGTTTATGTTTGATGTAA 1339
Query 1274 CAGGAAGAGTAACACTAGAAACGACAAGATCAATCATCGCATTTATAATGTTGAAGACAT 1333
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1340 CAGGAAGAGTAACACTAGAAACGACGAGATCAATCATCGCATTTATAATGGTGAAGACAT 1399
Query 1334 TTCAAGGGTTCAGAAAAAGTATCAATGTGGTTCATGAAGAGGTTACAGACAGAGGACGCC 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 TTCAAGGGTTCAGAAAAAGTATCAATGTGGTTCATGAAGAGGTTACAGACAGAGGACGCC 1459
Query 1394 AAGCAGTTGATTACGTTGGAGCCAAATCTTCTGTTATAATCACTGTGTGCCTCGCATTGT 1453
|||||||||| || |||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1460 AAGCAGTTGAATATGTTGGAGCCAAATCTTCTGTTATAATCACTGTATGCCTTGCGTTGT 1519
Query 1454 ACTTGCATATCATAAGCGGCTGTGTTCGGAATTCTCCTATAGGCGTAAGCCAGCATTTTT 1513
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1520 ACTTGCACATCATAAGCGGCTGTGTTCGGAATTCTCCCATAGGCGTAAGCCAGCATTTTT 1579
Query 1514 AGTTCTTCAGATGAAGAACG-GATC---GATTTGGTTTGGATATAGGATATTATTTGTTA 1569
|||||||||||||||||| | |||| ||||||||| |||||||||||| |||||||||
Sbjct 1580 AGTTCTTCAGATGAAGAA-GAGATCATCGATTTGGTT-GGATATAGGATAATATTTGTTA 1637
Query 1570 GGTACACAAGATTTATCAGCTCTTTGTTTATAGT-GGAGCTGAGGATATTGTAAAGACTG 1628
|||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||| ||
Sbjct 1638 GGTACACAAGATTTATCAGCTCGTTGTTTATAGTTGGAGCTGAGAATATTGTAAAGATTG 1697
Query 1629 TGTGCGTGTATTAGCACAACTTGATTCTTATTGATGGATCAT--AT---ATATA------ 1677
|||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1698 TGTGCGTGTATTAGCACAACTTGATTCTTATTGATGGATCATGGATCTTATATATATATA 1757
Query 1678 CATATTGAAAAGGTTCT-GGGGACATTGATGTTTG 1711
||||||||||||||||| |||| ||||||| ||||
Sbjct 1758 CATATTGAAAAGGTTCTTGGGG-CATTGATCTTTG 1791
> AT1G59510.1 | Symbols: CF9 | Carbohydrate-binding protein | chr1:21859595-21861076
FORWARD LENGTH=1482
Length=1482
Score = 412 bits (223), Expect = 4e-114
Identities = 657/852 (77%), Gaps = 87/852 (10%)
Strand=Plus/Plus
Query 274 ATGGACCTTCTTCGATTGAGCGA-AAAGGGTATC-TTTTTATCTCAGAGAAGAAGGAAAT 331
||||||||| |||||||||| || | | ||| || ||| | ||||||||||||||||||
Sbjct 174 ATGGACCTTGTTCGATTGAGAGACATA-GGT-TCAATTTCACCTCAGAGAAGAAGGAAAT 231
Query 332 GGCTGATTTTTA-TGGC-GATTTCTGGTGTTTCTGGCTT-TGGAGCTTACAAGGTTTATC 388
|||||| || || | || | |||| |||||||| || || |||| ||||| |||||| |
Sbjct 232 GGCTGA-TTCTATTAGCGGTTTTC-GGTGTTTC-GGGTTACGGAGTTTACAGGGTTTA-C 287
Query 389 -ATT-TACCAT-CTGTCGC-GAGAAAAAGGAAGCGTCTTTTTAAGCTTTTCGGAGCCATT 444
||| | | || | |||| || || | |||||||||| | || || ||| || ||||
Sbjct 288 AATTCT-CAATAC-ATCGCTAAG-AAGACGAAGCGTCTTATGAAACTCTTCTCAGGCATT 344
Query 445 GTCTCTGTT-GCTGAATTGATC-TCTGATTCAGCCGAGACCTTAAGTATCGTGTCACGAG 502
|| || || || ||| || || || ||||| || ||||| |||||||||| || ||||
Sbjct 345 GTTTC-ATTCGCCGAAATGGTCATC-GATTCCGCGGAGACGATAAGTATCGTTTCTCGAG 402
Query 503 ACTTG-AAGGGCTTTCTC-AATTCAGATTCAGATGAAATCCCTAATAGCTTGAAGCAGAT 560
| ||| ||| | |||||| || ||| |||| | |||||||||||||||||||| ||| |
Sbjct 403 ATTTGAAAGAG-TTTCTCGAA-TCAAATTCCCACGAAATCCCTAATAGCTTGAAACAGCT 460
Query 561 CGCGAAGATCA-CAACGTCGAATGAGTTTACGGATTCGCTTTCTAGGGTTTCTCAGGCTG 619
|||| |||| ||| || || ||||| || ||||| || ||||||||||| | ||||
Sbjct 461 ATCGAAAATCACCAA-ATCAAAAGAGTTCACTGATTCTCTAGCTAGGGTTTCTGAAGCTG 519
Query 620 TGA-CGATTGGTGCCTTT-CGTGGGTACAAATCCGAATCGTCTAGTAACAACGTTGGTGA 677
| | ||||||||| ||| |||||||| || |||| ||| | | ||| |
Sbjct 520 T-AGCGATTGGTG-TTTTCCGTGGGTATAATTCCG-ATC--C-----A-AAC------G- 561
Query 678 TTCAGGAATTGAGAAGAAATCGGATTCGAGTGTTCTTGATAAG-GTTTTCTCAGAGGCTG 736
|| ||| | ||| ||||| ||| |||||| ||||| || |||||||||||||
Sbjct 562 -TC--GAA---A-AAG-AATCGAATTTGAGTGTAGTTGAT-AGAGTTTTCTCAGAGG-AA 611
Query 737 GGA-CTGGGTTTGTTTCTGTTGTTGTTGGTAGCTTTGCTAAGAATCTTGTTCTTGGGTTT 795
||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 612 GGAGCTGGTTTTGTTTCTGTTGTTGTTGGTAGTTTTGCTAAGAATCTTGTTCTTGGATTT 671
Query 796 TACTCTGGTAAGCTCGAGAGTGGTGTGAAATGTGAGGGTTCTGATTCTTCAGAGACACCT 855
||||||||| || | |||| | || | | |||| |||||||| | | | ||||
Sbjct 672 TACTCTGGTGAGATTGAGA-T--TG-G-TA-GTGA------TGATTCTTTA-A-A-ACCT 716
Query 856 AAATGGGTGAATTTGCTTTGTGATGATAAGTGTAGAGAGCTTTTAGCTGTTTGTATTGAG 915
| |||| ||||||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 717 AGATGGATGAATTTGCTTAGTGATGATAAGTGTAGAGAGCTTTTAGCAGATTGTATTGAG 776
Query 916 AGATTCACCAGCACTGC-G-ATTGGTGTGTATCTTGACAAGACGAT-GGATATCAATACT 972
|||||||| ||| | || | || ||||| |||| || || ||| | || | | ||||||
Sbjct 777 AGATTCACTAGCTCAGCTGTATCGGTGTATATC--GATAAAACGGTTGG-TGTTAATACT 833
Query 973 TATGATCAAATCTTTGAAGGCTTGACGAATCCGAAACATC-AGGATAGTG-TCAAAGACG 1030
|||||||| || || | || ||||||||||||||||||| || |||||| || | || |
Sbjct 834 TATGATCAGATATTCGCTGGTTTGACGAATCCGAAACATCGAG-ATAGTGCTCGA-GATG 891
Query 1031 TTCTTGTTTCGGTTTGTAATGGTGCTCTTCAGACTATTGTT-AGGACATCTCACGAAGTG 1089
|||||||||||||||||||||| |||||| |||| || | || || ||||| || ||
Sbjct 892 TTCTTGTTTCGGTTTGTAATGGAGCTCTTGAGACG-TTCATGAGAACTTCTCATGATGTC 950
Query 1090 TTTACATCTTCA 1101
|| |||||||||
Sbjct 951 TTCACATCTTCA 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84587918325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5