BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471133
Length=2485
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10180.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 4078 0.0
> AT1G10180.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: exocyst complex component 84B (TAIR:AT5G49830.1); Has
132 Blast hits to 132 proteins in 25 species: Archae - 0;
Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 117; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:3338303-3341608
REVERSE LENGTH=2502
Length=2502
Score = 4078 bits (2208), Expect = 0.0
Identities = 2395/2486 (96%), Gaps = 9/2486 (0%)
Strand=Plus/Plus
Query 1 TCTTGAGAGTAGAGAGAGTCCAAAGCATCACTATCGTGCTTCTTTCGGCAACCGTGTCTG 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 TCTTGAGAGCAGAGAGAGTCCAAAGCATCACTATCGTGCTTCTTTCGGCAACCGTGTCTG 62
Query 61 AGACAGTGAGACTCCGCGGAAGACTGAGGGGGAAATAGATAGAGCGAGAGACATGGAGAG 120
|||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 63 AGACAGTGAGACTCCGAGGAAAACTGAAGGGGAAATAGATAGAGCGAGAGACATGGAGAG 122
Query 121 CAGCGAGGAAGATGACGAGTACCCATTTATCGAAAGCATCACTCCTCAGTCAAAGATCGA 180
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 123 CAGCGAGGAAGACGACGAGTACCCATTTATAGAAAGCATCACTCCTCAGTCAAAGATCGA 182
Query 181 TTCCGTTCACCAGTCTCTCACCGAAAAGGTGATTAGAAAGCTTTGCTGTGAGCTTATGGA 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 183 TTCCGTTCACCAGTCTCTCACCGAAAAGGGGATTAGAAAGCTTTGCTGTGAGCTTATGGA 242
Query 241 TTTAAAGGATGCTGTGGAAAATATGTGTGGTGATATGCGTACCAAGTACCTTGCTTTCTT 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 243 TTTAAAGGATGCTGTGGAAAATATGTGCGGTGATATGCGTACCAAGTACCTTGCTTTCTT 302
Query 301 AAGAATATCTGAAGAAGCGGTGGAGATGGAGCACGAGTTGGTTGAGCTACGGAAACATAT 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 303 AAGAATATCTGAAGAAGCGGTGGAGATGGAGCATGAGTTGGTTGAGCTACGGAAACATAT 362
Query 361 TTCTTCTCAGGGGATTCTTGTGCAGGATCTGATGGCTGGAGTTTGCCGTGAGATGGATGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TTCTTCTCAGGGGATTCTTGTGCAGGATCTGATGGCTGGAGTTTGCCGTGAGATGGATGA 422
Query 421 TTGGAATCGATCCCCTGGTGATGTACATGACGCTGAAGTCGAAGAGGACCCCTTGCCTAA 480
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TTGGAATCGATTACCTGGTGATGTACATGACGCTGAAGTCGAAGAGGACCCCTTGCCTAA 482
Query 481 TGAAGTTACCGATCCAAAGTCTGAGTTCCTGGAGAAAATTGACCTTCTTTTGGCTGAACA 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TGAAGTAACCGATCCAAAGTCTGAGTTCCTGGAGAAAATTGACCTTCTTTTGGCTGAACA 542
Query 541 TAAAGTGGATGAAGCACTGGAGGTGATGGATGCTGAGGAAAGAAGCAGTCCAGATCTTAA 600
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 543 TAAAGTGGATGAAGCACTGGAGGCAATGGATGCTGAGGAAAGAAGCAGTCCAGATCTTAA 602
Query 601 AGGATCAGTCGAGATGTCTTCTTACAAGTCTGCATTTATGGAAAGAAAGGCGGTTCTTGA 660
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 603 AGGATCAGTCGAGATGTCTTCTTACAAGTCTGCCTTTATGGAAAGAAAGGCGGTTCTTGA 662
Query 661 GGATCAGCTCCTTAAGATAGCTAAGCAACCTTCGATTTGTGTAGCTGAATTGAAGCATGC 720
|||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 663 GGATCAGCTCCTTAGGATCGCTAAACAACCCTCGATTTGTGTAGCTGAATTGAAGCATGC 722
Query 721 ATTGATTGGGTTGATCAGAATTGGAAAAGGACCTTCAGCTCACCAATTGCTTCTAAAGTT 780
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 723 ATTGATTGGGTTAATCAGACTTGGAAAAGGACCTTCAGCTCACCAATTGCTTCTAAAGTT 782
Query 781 TTACGCCACAAGCCTCCGCAGAAGAATTGAGGCCTTTCTTCCTTCATGTTCCACTTGCCC 840
||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||
Sbjct 783 TTACGCCACAAGCCTCCGCAGAAGAATCGAGGCCTTTCTCCCTTCATGTTTGACTTGCCC 842
Query 841 AAACAC-TTTCCCTGCCACTCTTTCTAAGCTTGTTTTCTCTAACATCTCAGTGGCTGCAA 899
|||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 843 AAACACGTTT-CCTGCTACTCTCTCTAAGCTTGTTTTCTCTAACATCTCAGTGGCTACAA 901
Query 900 AAGAATCAGCAGCGATGTTTGGTGATGATGATAATCCTGCATATTCCAACAAAGTTGTTC 959
||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 902 AAGAATCCGCAGCCATGTTTGGTGACGATGATAATCCCGCATATTCCAACAAAGTTGTTC 961
Query 960 AATGGGCAGAGAGGGAAGTTGAATATTTGGTGCGGTTGGTTAAAGAAAACGCCTCTCCTT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 962 AATGGGCAGAGAGGGAAGTTGAATATTTGGTGCGGTTGGTTAAAGAAAACGCTTCTCCTT 1021
Query 1020 CTGAAACATCTTCTGCATTGCGTGCAGCCAGTATATGTCTTCAAGATTGTCTTAACTATT 1079
| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1022 CCGAAACAGCTTCTGCATTGCGGGCAGCCAGTATATGTCTTCAAGATTGTCTTAACTATT 1081
Query 1080 GCAAAGTGTTGGAACCACAAGGCTTATTTTTGTCTAAGCTATTTTTGGTGCTGTTCCGGC 1139
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1082 GCAAAGTGTTGGAACCACAAGGCTTATTTCTGTCTAAGCTATTTTTGGTGCTGTTCCGAC 1141
Query 1140 CTTATGTTGAAGAAGTGTTGGAGTTGAATTTTAGACGGGCTCGAAGGGTTATCTTTGACT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CTTATGTTGAAGAAGTGTTGGAGTTGAATTTTAGACGGGCTCGAAGGGTTATCTTTGACT 1201
Query 1200 TGACTGAAACTGATGAGGGCTTGGAATCATCCTCAGACTTTGTGATAATATTATCTGAAT 1259
||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||
Sbjct 1202 TGAATGAAACTGATGAGGGCTTGGAATCACCCTCTGACTTTGTGACAATATTATCTGAAT 1261
Query 1260 TCGCTATCGCTTCAGATACTATGATGACTGATTGTAGCATTCGATTCATGCTAATTGTGC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1262 TCGCTATCGCTTCAGATACTATGATGACTGATTGTAGCATTCGATTCATGCAAATTGTGC 1321
Query 1320 AAGACATACTTGAGCAGTTAACACACCTAGTTGTGTTACACTTTGGTGAGAGTGTGTTAA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1322 AAGACATACTTGAGCAGTTAACACACCTAGTTGTGTTACACTTTGGTGAGAGTGTACTAA 1381
Query 1380 CGAGGATACTGCAACTATATGATAAATACATCGACTTTCTGATCAAAGCCTTGCCTGGCC 1439
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 CGAGGATATTGCAACTATATGATAAATACATCGACTTTCTGATCAAAGCCTTGCCTGGCC 1441
Query 1440 ATTCAGATGAGGATGGTCTCCCTGAGCTCCAAGATCATACCGTACTCGCTAGAGCTGAGA 1499
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1442 ATTCAGATGAGGATGGTCTACCTGAGCTCCAAGATAATACCGTACTCGCTAGAGCTGAGA 1501
Query 1500 CAGATTCTGAGCAGCTTGCTCTTCTTGGAGCGGCGTTTACAATACTTGACGAACTTTTAC 1559
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1502 CAGATTCTGAGCAGCTTGCGCTTCTTGGAGCTGCGTTTACAATACTTGACGAACTTTTAC 1561
Query 1560 CAAGATCACTTGTTAAAGTCTGGAAACTCCAGATTGAAAATGGCGGAGGAGAAGGTGAGA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 CAAGATCACTTGTTAAAGTCTGGAAACTCCAGATTGAAAATGGCGGAGGAGAAGGTGAGA 1621
Query 1620 GTAGTGCTGCGCTAAACAGTAGCGCTGCACCGGAACTGAAAGAATGGAAACGCCACATGG 1679
|||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1622 ATAGTGCCGCTCTAAACAGTAGTGCTGCACCGGAACTGAAAGAATGGAAACGCCATATGG 1681
Query 1680 TTCAAGCATTTGACAAACTCAGAAACTACTTCTGTCTGCAGTTTGTCTTGAGCTTCATCT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 TTCAAGCATTTGACAAACTCAGAAACTACTTCTGTCTGCAGTTTGTCTTGAGCTTCATCT 1741
Query 1740 ACTCTAGGGAAGGACTAACGCGACTAGACGCACTCATTTATTTAACCGAAACACCAGATG 1799
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1742 ACTCTAGGGAAGGACTAACGCGATTAGACGCACTCATTTATTTAACCGAAACACCAGATG 1801
Query 1800 ACTTGCATCTGCCGTCTTTACCATTTCAGGCATTGTTTTCTAAGCTACAACAGTTGGCCA 1859
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1802 ACTTGCATCTGCCGTCTTTACCGTTTCAGGCATTGTTTTCTAAGCTACAACAGTTGGCCA 1861
Query 1860 TAATTGCGGGGGATGTTCTGCTTGGTAAAGAGAAGCTTCAAAAGATTCTACTAGCGAGAT 1919
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1862 TAATTGCTGGGGATGTTCTGCTTGGTAAAGAGAAGCTGCAAAAGATTCTACTAGCGAGAT 1921
Query 1920 TAACTGAGACTGTTATAATCTGGCTATCAAACGAGCAGGAGTTTTGGAGTGCATTCGAGG 1979
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922 TAACAGAGACGGTTATAATCTGGCTATCAAACGAGCAGGAGTTTTGGAGTGCATTCGAGG 1981
Query 1980 ACGAGTCAAATCCACTTCAGTCATCTGGGTTGCAACAGTTGATCCTCGACATGAACTTCA 2039
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1982 ACGAGTCAAATCCACTTCAGCCATCTGGATTGCAACAGTTGATCCTCGACATGAACTTCA 2041
Query 2040 CAGTGGAGATAGCCCGGTTCGCAGGTTATCCATTTAAAGTAGTTCAGAACCATGCATCAG 2099
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2042 CAGTGGAGATAGCCAGGTTTGCAGGTTATCCATTTAAAGTAGTTCAGAACCATGCATCAG 2101
Query 2100 TAGTGATCAACCGAGCCATCAATATATTCTCCGAAAGAGGCATCAACCCACAAAGCTCAC 2159
| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2102 TGGTGATCAATCGAGCCATCAACATATTCTCGGAAAGAGGCATCAACCCACAAAGCTCAC 2161
Query 2160 TCCCGAAGACAGAGTGGTTCACAGAAGCCGCCAAGTCAGCTATCAACAGGCTACTCATGG 2219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2162 TCCCGAAGACAGAGTGGTTCACAGAAGCCGCCAAGTCAGCTATCAACAGGCTACTCATGG 2221
Query 2220 GGTCTGAGGATGCTTCAGAACCGGAAGAGTATGAGTGTgaagaagaagaagaagaCGATG 2279
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2222 GGTCTGAGGATGCTTCAGAACCGGAAGAATATGAGTGTGAAGAAGAAGAAGAAGACGATC 2281
Query 2280 ATCACATCGTGCTCCCTGAGATGGATGAAGACTCAGATTCCGAAGATACATCTTCACTTT 2339
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2282 ATCACATCGTCCTCCCTGAGATGGATGACGACTCAGATTCCGAAGATACATCTTCACTCT 2341
Query 2340 CGACAGTGGACTCGTTCGAGTCATTTGCTTCTGCAAGCATGGCTGACCTTGAGAGTCCCT 2399
| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 2342 CCACAGTGGACTCGTTCGAGTCATTTGCCTCTGCAAGCATGGCTGACCTAGAGAGTCCAT 2401
Query 2400 CTTTCACCGATTCAGAGTCTTGACCACTTTGTTTGTAGTTTGTATATTGTAGTCAGTCAG 2459
||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 2402 CTTTCACCGATTCTGAGTCTTGACCACTTTCTTTGTAGTTTGTATCCTGTAGTCA---AG 2458
Query 2460 TCAGTCTCTCAAAACTCTCAAGTTAA 2485
|| |||| ||||||||||||||||
Sbjct 2459 TC--TCTC--AAAACTCTCAAGTTAA 2480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123310345894
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5