BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471134
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10200.1 | Symbols: WLIM1 | GATA type zinc finger transcript... 1397 0.0
> AT1G10200.1 | Symbols: WLIM1 | GATA type zinc finger transcription
factor family protein | chr1:3346390-3347885 REVERSE LENGTH=982
Length=982
Score = 1397 bits (756), Expect = 0.0
Identities = 874/928 (94%), Gaps = 20/928 (2%)
Strand=Plus/Plus
Query 1 AACAATAATTGACAATCTCTTTCTTTCATCTTCATCCTATTCCTCTTTA------TCTCT 54
|||||||||||||||||||||||||||||||||||| ||||| |||||| |||||
Sbjct 1 AACAATAATTGACAATCTCTTTCTTTCATCTTCATCTTATTCTTCTTTATCTCTCTCTCT 60
Query 55 CTCTCAAAACGATTGAG---C-TTCTTTTTTCCTGAGTCTTTACTTTAGTCTGATCTCTT 110
||||||| || |||||| | ||||||||||||||||| | ||||||||||||||||
Sbjct 61 CTCTCAAGACTATTGAGCTTCTTTCTTTTTTCCTGAGTC--T--TTTAGTCTGATCTCTT 116
Query 111 ACAAAAATGGCGTTCGCAGGAACAACCCAAAAATGCATGGCCTGTGACAAAACCGTTTAT 170
|||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 117 ACAAGAATGGCGTTCGCAGGAACAACCCAGAAATGCATGGCATGTGACAAAACAGTTTAT 176
Query 171 CTTGTTGACAAGTTAACCGCCGATAACCGGGTCTACCACAAAGCTTGTTTCCGATGTCAC 230
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CTTGTCGACAAGTTAACCGCCGATAACCGGGTCTACCACAAAGCTTGTTTCCGATGTCAC 236
Query 231 CATTGCAAAGGAACTCTCAAGCTTAGCAATTACAACTCCTTTGAAGGAGTTCTCTATTGC 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 237 CATTGCAAAGGAACTCTCAAGCTTAGCAATTACAACTCCTTTGAAGGAGTTCTCTACTGC 296
Query 291 AGACCACATTTCGATCAAAACTTCAAGAGAACTGGAAGTCTTGAGAAAAGCTTCGAAGGG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGACCACATTTCGATCAAAACTTCAAGAGAACTGGAAGTCTTGAGAAAAGCTTCGAAGGG 356
Query 351 ACACCAAAGATTGGAAAACCTGATAGGCCTTTGGAGGGAGAGAGACCTGCTGGAACCAAA 410
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ACACCAAAGATTGGGAAACCTGATAGGCCTTTGGAGGGAGAGAGACCTGCTGGAACCAAA 416
Query 411 GTGTCGAATATGTTTGGTGGAACACGAGAGAAATGCGTTGGCTGCGATAAAACCGTGTAT 470
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 417 GTTTCGAATATGTTTGGTGGAACACGAGAGAAATGCGTTGGTTGCGACAAAACCGTGTAT 476
Query 471 CCAATTGAGAAGGTGTCGGTGAATGGGACATTGTACCACAAGAGCTGCTTCAAGTGTACA 530
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 477 CCAATTGAGAAGGTATCGGTGAATGGAACATTGTACCACAAGAGCTGCTTCAAGTGTACA 536
Query 531 CATGGAGGTTGCACCATAAGCCCGTCGAATTACATAGCTCACGAGGGAAAGCTTTATTGC 590
|||||||| ||||| |||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 537 CATGGAGGCTGCACGATAAGCCCTTCGAATTACATAGCTCACGAGGGTAAGCTATATTGC 596
Query 591 AAGCATCATCATATTCAGCTGATCAAAGAGAAAGGAAACTTGAGCCAGCTCGAAGGAGGA 650
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 597 AAGCATCATCATATTCAGCTGATCAAGGAGAAAGGAAACTTGAGCCAGCTCGAAGGAGGA 656
Query 651 GGAGAGAATGCCGCTAAGGACAAAGACGTCGCTGCTTAAAGAAACAATTCAATCTCTCTG 710
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 657 GGAGAGAATGCCGCCAAGGACAAAGTCGTCGCTGCTTAAAGAAACAATTCAATCTCTCTG 716
Query 711 G-ATGATTTTGACAATGGAAGAATCAAAAGAGTCACTACTACTTC-TCGATCGATAACAT 768
| ||||||||||| || ||||||||||||||||||||||| || | ||||||||||||||
Sbjct 717 GGATGATTTTGACTATCGAAGAATCAAAAGAGTCACTACTTCTCCATCGATCGATAACAT 776
Query 769 ATAttggttttgtttcttcttacgtttgtgtttgtctttttggtctttaagatgttgttg 828
||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||
Sbjct 777 ATATTGGTTTTGTTTCTTCCTACGTTTGTGTTTTTCTTTTTGGTCTTTAATATGTT-TT- 834
Query 829 tttttttttttGGGATCTTTGTTCACTCTTTTATTGGGTTTCTTGAGATGAAACTAGAGA 888
||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 835 TTTTTTTTT--GGGACCTTTGTTCACTCTTTTATTGGGTTTCTTGAAATGAAACTAGAGA 892
Query 889 AACAGAGAAATAATGGATGTTTGCTTAT 916
|||| |||||||||||||||||||||||
Sbjct 893 AACAAAGAAATAATGGATGTTTGCTTAT 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44758624977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5