BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471135
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10210.1 | Symbols: ATMPK1, MPK1 | mitogen-activated protein... 2093 0.0
AT1G59580.1 | Symbols: ATMPK2, MPK2 | mitogen-activated protein... 1151 0.0
AT3G26805.1 | Symbols: | pseudogene, aspartic protease, blast... 108 2e-22
> AT1G10210.1 | Symbols: ATMPK1, MPK1 | mitogen-activated protein
kinase 1 | chr1:3349219-3351180 FORWARD LENGTH=1631
Length=1631
Score = 2093 bits (1133), Expect = 0.0
Identities = 1348/1445 (93%), Gaps = 42/1445 (3%)
Strand=Plus/Plus
Query 1 GTCAACTGTCCGAGCGTTGACCAAATAAATCTCTCTCACTTTCACAGCTTTCTCTCTCTG 60
||||||||||||||||||| || ||||||||||||||| ||||| |||||||||| |
Sbjct 1 GTCAACTGTCCGAGCGTTGGCC----AAATCTCTCTCACTTCCACAGGTTTCTCTCTCCG 56
Query 61 GCCAAATCTAACCTCCGGCGATCATCGTTGGTCACTGATTTCTTATCACCGAGGaaaaat 120
|||||||||||||||||| || | |||||||| | | ||||||||||||| ||||
Sbjct 57 GCCAAATCTAACCTCCGGGGAACGTCGTTGGT--C--A---CTTATCACCGAGGGAAAAC 109
Query 121 aaaaaaTGGCGACTCTGGTTGATCCTCCTAATGGGATTA-GAATCGAAGGGAAGCATTAC 179
|||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 110 AAAAAATGGCGACTTTGGTTGATCCTCCTAATGGGATAAGGAAT-GAAGGGAAGCATTAC 168
Query 180 TTCTCAATGTGGCAAACTCTGTTCGAGATCGACACTAAATACATGCCAATCAAGCCGATT 239
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 169 TTCTCAATGTGGCAAACTCTGTTCGAGATCGACACTAAGTACATGCCTATCAAGCCTATT 228
Query 240 GGTCGTGGAGCTTACGGTGTAGTCTGCTCCTCTGTTAACACTGATACCAACGAGAAAGTA 299
|||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 229 GGTCGTGGAGCTTACGGTGTTGTCTGCTCCTCTGTTAACAGTGACACCAACGAGAAAGTT 288
Query 300 GCTATCAAGAAGATTCACAATGTTTATGAGAATAGGATCGATGCGTTGAGGACTCTTCGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GCTATCAAGAAGATTCACAATGTTTATGAGAATAGGATCGATGCGTTGAGGACTCTTCGG 348
Query 360 GAGCTCAAGCTTCTACGCCATCTTCGACATGAGAATGTCATTGCTTTGAAAGATGTCATG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GAGCTCAAGCTTCTACGCCATCTTCGACATGAGAATGTCATTGCTTTGAAAGATGTCATG 408
Query 420 ATGCCAATTCATAAGAGGAGCTTCAAAGATGTGTATCTTGTTTATGAGCTAATGGACACT 479
|||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 409 ATGCCAATTCATAAGATGAGCTTCAAGGATGTTTATCTTGTTTATGAGCTCATGGACACT 468
Query 480 GATCTCCACCAGATTATCAAGTCTTCTCAAGTTCTAAGTAACGATCACTGCCAATACTTC 539
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 469 GATCTCCACCAGATTATCAAGTCTTCTCAAGTTCTTAGTAACGATCATTGCCAATACTTC 528
Query 540 TTGTTCCAGTTGCTTCGAGGGCTCAAGTATATTCATTCAGCCAACATCCTGCACCGAGAT 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 529 TTGTTCCAGTTGCTTCGAGGGCTCAAGTATATTCATTCAGCCAATATCCTGCACCGAGAT 588
Query 600 TTGAAACCCGGTAACCTTCTTGTCAACGCAAACTGTGATTTGAAA-ATATGCGATTTTGG 658
|||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 589 TTGAAACCTGGTAACCTTCTTGTCAACGCAAACTGCGATTT-AAAGATATGCGATTTTGG 647
Query 659 GCTTGCGCGTGCGAGCAACACCAAGGGTCAGTTCATGACTGAATATGTTGTGACTCGTTG 718
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 ACTAGCGCGTGCGAGCAACACCAAGGGTCAGTTCATGACTGAATATGTTGTGACTCGTTG 707
Query 719 GTACCGAGCTCCC-GAGCTTCTCCTCTGTTGTGACAACTATGGAACATCCATTGATGTTT 777
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GTACCGAGC-CCCAGAGCTTCTCCTCTGTTGTGACAACTATGGAACATCCATTGATGTTT 766
Query 778 GGTCTGTTGGTTGCATTTTTGCCGAGCTTCTTGGTAGGAAACCGATATTCCAAGGAACAG 837
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 767 GGTCTGTTGGTTGCATTTTCGCCGAGCTTCTTGGTAGGAAACCGATATTCCAAGGAACGG 826
Query 838 AATGTCTTAACCAGCTTAAACTCATTGTCAACATTCTCGGAAGCCAAAAAGAAGAAGATC 897
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||
Sbjct 827 AATGTCTTAACCAGCTGAAGCTCATTGTCAACATTCTCGGAAGCCAAAGAGAAGAAGATC 886
Query 898 TTGAGTTCATAGATAACCCGAAAGCTAAAAGATACATTAGATCACTTCCGTACTCACCGG 957
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 887 TTGAGTTCATAGATAACCCGAAAGCTAAAAGATACATTAGATCACTTCCGTACTCACCTG 946
Query 958 GGATGTCTTTATCCAGGCTTTACCCGGGCGCTCATGTGTTGGCCATCGACCTTCTTCAGA 1017
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 947 GGATGTCTTTATCCAGACTTTACCCGGGCGCTCATGTTTTGGCCATCGACCTTCTGCAGA 1006
Query 1018 AAATGCTTGTTTTTGACCCATCTAAGAGGATTAGTGTCACTGAAGCACTCCAGCATCCAT 1077
|||||||||||||||| || || ||||||||||||||| |||||||||||||||||||||
Sbjct 1007 AAATGCTTGTTTTTGATCCGTCAAAGAGGATTAGTGTCTCTGAAGCACTCCAGCATCCAT 1066
Query 1078 ACATGGCGCCTCTATATGACCCGAATGCAAACCCTCCGGCTCAAGTTCCTATCGATCTCG 1137
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1067 ACATGGCGCCTCTATATGACCCGAATGCAAACCCTCCTGCTCAAGTTCCTATCGATCTCG 1126
Query 1138 ATGTAGATGAGGATTTGAGAGAGGAGATGATAAGAGAAATGATGTGGAATGAGATGCTTC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 ATGTAGATGAGGATTTGAGAGAGGAGATGATAAGAGAAATGATGTGGAATGAGATGCTTC 1186
Query 1198 ATTATCATCCACAAGCTTCAACCTTAAACACCGAGCTTTGAGCTCAAGTCTTGTTTGTAC 1257
| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1187 ACTACCATCCACAAGCTTCAACCTTAAACACTGAGCTCTGAGCTCAAGTCTTGTTTGTAC 1246
Query 1258 GGGTAATTTACAGAAATCTTCTTCTACTTATGTCTGATTGTCATCATA-A---A-A---- 1308
|||||||||||||||| |||||||| |||||||||||||||||||||| | | |
Sbjct 1247 GGGTAATTTACAGAAAACTTCTTCTTCTTATGTCTGATTGTCATCATAGACTCATAGTGT 1306
Query 1309 A-ATA------A-------GATGAAGAATAACTTGTAGTTTAAGCGAGTAGTGATGCCAT 1354
| ||| | |||||||| |||||| |||||||||||| ||||||||||||
Sbjct 1307 ATATAGTCTTGAAAAATAAGATGAAGACTAACTTATAGTTTAAGCGAATAGTGATGCCAT 1366
Query 1355 GGAAGCTGTGTGTTT-TTTAATTACAAGCTTTAAGTGTGTCTGTAACATATGTACATaga 1413
||||||| ||| ||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1367 GGAAGCTCTGT-TTTATTTAATTACAAGCTTGATGTGTGTCTGTAACATATGTACATAGA 1425
Query 1414 gagag 1418
|||||
Sbjct 1426 GAGAG 1430
Score = 180 bits (97), Expect = 4e-44
Identities = 127/141 (90%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 1358 AGCTGTG--TGTTTTTTAATTACAAGCTTTAAGTGTGTCTGTAACATATGTACATagaga 1415
||||||| | |||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 1490 AGCTGTGTTTTTTTTTTAATTACAAGCTTGATGTGTGTCTGTAACATATGTTCATAGAGA 1549
Query 1416 gag-agag-CTGTGTTTCTCTGTTTGTTTGTTGCGTTCTTGCAGAACTTTTAACCCTCTC 1473
||| | | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 GAGCTGTGTTTCTGTTTCTCTGTTTGTTTGTTGCGTTCTTGCAGAACTTTTAACCCTCTC 1609
Query 1474 ATGCAATCCAAGGGTTTTGAT 1494
|||||||||||| |||||||
Sbjct 1610 ATGCAATCCAAGCCTTTTGAT 1630
> AT1G59580.1 | Symbols: ATMPK2, MPK2 | mitogen-activated protein
kinase homolog 2 | chr1:21884043-21886051 FORWARD LENGTH=1615
Length=1615
Score = 1151 bits (623), Expect = 0.0
Identities = 959/1120 (86%), Gaps = 28/1120 (3%)
Strand=Plus/Plus
Query 125 aaTGGCGACT-CTGGTTGATCCTCCTAATGGGATTA-GAATCGAAGGGAAGCATTACTTC 182
|||||||||| || |||||||| |||||||| |||| ||||| |||||||||||||||||
Sbjct 176 AATGGCGACTCCT-GTTGATCCACCTAATGGAATTAGGAATC-AAGGGAAGCATTACTTC 233
Query 183 TCAATGTGGCAAACTCTGTTCGAGATCGACACTAAATACATGCCAATCAAGCCGATTGGT 242
|||||||||||||| || ||||||||||| || |||||| |||| ||||| ||||| ||
Sbjct 234 TCAATGTGGCAAACACTTTTCGAGATCGATACCAAATACGTGCCTATCAAACCGATAGGC 293
Query 243 CGTGGAGCTTACGGTGTAGTCTGCTCCTCTGTTAACACTGATACCAACGAGAAAGTAGCT 302
|| || || |||||||| || ||||| || ||||||| || | || |||| ||| ||
Sbjct 294 CGAGGCGCGTACGGTGTGGTTTGCTCTTCGGTTAACAGAGAGAGTAATGAGAGAGTGGCG 353
Query 303 ATCAAGAAGATTCACAATGT-TTATGAGAATAGGATCGATGCGTTGAGGACTCTTCGGGA 361
||||||||||| |||||||| || |||||||||||| |||||||||||||||||| ||||
Sbjct 354 ATCAAGAAGATCCACAATGTGTT-TGAGAATAGGATTGATGCGTTGAGGACTCTTAGGGA 412
Query 362 GCTCAAGCTTCTACGCCATCTTCGACATGAGAATGTCATTGCT-TTGAAAGATGTCATGA 420
||||||||||||||| |||||||||||||||||||| ||||| || |||||||| ||||
Sbjct 413 GCTCAAGCTTCTACGTCATCTTCGACATGAGAATGTGGTTGCTCTT-AAAGATGTAATGA 471
Query 421 T-GCCAATTCATAAGAGGAGCTTCAAAGATGTGTATCTTGTTTATGAGCTAATGGACACT 479
| || || ||||||||| ||||| || ||||| ||||||||||||||||| ||||| |||
Sbjct 472 TGGCTAA-TCATAAGAGAAGCTTTAAGGATGTTTATCTTGTTTATGAGCTTATGGATACT 530
Query 480 GATCTCCACCAGATTATCAAGTCTTCTCAAGTTCTAAGTAACGATCACTGCCAATACTTC 539
||||| || |||||||| ||||||||||||||||||||||| || || ||||||||||||
Sbjct 531 GATCTTCATCAGATTATTAAGTCTTCTCAAGTTCTAAGTAATGACCATTGCCAATACTTC 590
Query 540 TTGTTCCAGTTGCTTCGAGGGCTCAAGTATATTCATTCAGCCAACATCCTGCACCGAGAT 599
||||||||||||||||||||||||||||||||||||||||| ||||| || || || |||
Sbjct 591 TTGTTCCAGTTGCTTCGAGGGCTCAAGTATATTCATTCAGCAAACATTCTCCATCGGGAT 650
Query 600 TTGAAACCCGGTAACCTTCTTGTCAACGCAAACTGTGATTTGAAA-ATATGCGATTTTGG 658
|||||||||||||||| ||||| || |||||||| || || ||| ||||| || |||||
Sbjct 651 CTGAAACCCGGTAACCTCCTTGTGAATGCAAACTGCGACTT-AAAGATATGTGACTTTGG 709
Query 659 GCTTGCGCGTG-CGAGCAACACCAAGGGTCAGTTCATGACTGAATATGTTGTGACTCGTT 717
||| ||| | | ||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 710 GCTAGCGAG-GACGAGCAACACCAAAGGTCAGTTCATGACTGAATATGTTGTGACTAGAT 768
Query 718 GGTACCGAGCTCCCGAGCTTCTCCTCTGTTGTGACAACTATGGAACATCCATTGATGTTT 777
|||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 769 GGTACCGAGCACCAGAGCTACTCCTCTGTTGTGACAACTATGGAACCTCCATTGATGTCT 828
Query 778 GGTCTGTTGGTTGCATTTTTGCCGAGCTTCTTGGTAGGAAACC-GATATTCCAAGGAACA 836
|||| || |||||||| || |||||||||||||| || ||||| | |||||| ||||||
Sbjct 829 GGTCAGTCGGTTGCATATTCGCCGAGCTTCTTGGAAGAAAACCAG-TATTCCCGGGAACA 887
Query 837 GAATGTCTTAACCAGCTTAAACTCATTGTCAACATTCTCGGAAGCCAAAAAGAAGAAGAT 896
|||||||| |||||| |||||||||| | |||||| | || ||||| | ||| ||||||
Sbjct 888 GAATGTCTAAACCAGATTAAACTCATCATTAACATTTTGGGTAGCCAGAGAGAGGAAGAT 947
Query 897 CTTGAGTTCATAGATAACCCGAAAGCTAAAAGATACATTAGA-TCACTTCCGTACTCACC 955
|| ||||| ||||||||||| ||||| ||||||||||| ||| ||||| || ||||||||
Sbjct 948 CTCGAGTTTATAGATAACCCAAAAGCCAAAAGATACAT-AGAATCACTCCCTTACTCACC 1006
Query 956 GGGGATGTCTTTATC-CAGGCTTTACCCGGGCGCTCATGTGTTGGCCATCGACCTTCTTC 1014
||||| || || || | | ||||||||||| || |||| || ||||| || || ||||
Sbjct 1007 AGGGATATCATTCTCTC-GTCTTTACCCGGGTGCAAATGTTTTAGCCATTGATCTGCTTC 1065
Query 1015 AGAAAATGCTTGTTTTTGACCCATCTAAGAGGATTAGTGTCACTGAAGCACTCCAGCATC 1074
|||||||||| ||| ||||||| || || |||||||||||||| ||||| || || ||||
Sbjct 1066 AGAAAATGCTCGTTCTTGACCCTTCGAAAAGGATTAGTGTCACGGAAGCGCTTCAACATC 1125
Query 1075 CATACATGGCGCCTCTATATGACCCGAATGCAAACCCTCCGGCTCAAGTTCCTATCGATC 1134
| |||||||||||| |||||||||||| |||||| ||||| |||||||||||||| ||||
Sbjct 1126 CTTACATGGCGCCTTTATATGACCCGAGTGCAAATCCTCCTGCTCAAGTTCCTATTGATC 1185
Query 1135 TCGATGTAGATGA-G--GA---TTTGAGAG-AGGAGATGATAAGAGAAATGATGTGGAAT 1187
||||||||||||| | || |||| ||| || |||||||||||||| | ||||||||
Sbjct 1186 TCGATGTAGATGAAGACGAGGATTTGGGAGCAG-AGATGATAAGAGAATTAATGTGGAAG 1244
Query 1188 GAGATGCTTCATTATCATCCACAAGCTTCAACCTTAAACA 1227
|| ||| |||||||||||||| ||||| | ||| ||||||
Sbjct 1245 GAAATGATTCATTATCATCCAGAAGCTGCTACCATAAACA 1284
> AT3G26805.1 | Symbols: | pseudogene, aspartic protease, blastp
match of 37% identity and 5.3e-11 P-value to GP|4389326|pdb|1B5F|A
Chain A, Native Cardosin A From Cynara Cardunculus
L. >GP|6729875|pdb|1B5F|C Chain C, Native Cardosin A From
Cynara Cardunculus L | chr3:9863074-9863900 REVERSE LENGTH=827
Length=827
Score = 108 bits (58), Expect = 2e-22
Identities = 73/80 (91%), Gaps = 2/80 (3%)
Strand=Plus/Minus
Query 1395 TGTAACATATGTACATagagagag-agag-CTGTGTTTCTCTGTTTGTTTGTTGCGTTCT 1452
|||||||||||| ||||||||||| | | | |||||||||||||||||||||||||||
Sbjct 82 TGTAACATATGTTCATAGAGAGAGCTGTGTTTCTGTTTCTCTGTTTGTTTGTTGCGTTCT 23
Query 1453 TGCAGAACTTTTAACCCTCT 1472
||||||||||||||||||||
Sbjct 22 TGCAGAACTTTTAACCCTCT 3
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5