BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471136

Length=632
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10230.1 | Symbols: ASK18, SK18 | SKP1-like 18 | chr1:335557...   760    0.0  


> AT1G10230.1 | Symbols: ASK18, SK18 | SKP1-like 18 | chr1:3355571-3356359 
FORWARD LENGTH=789
Length=789

 Score =  760 bits (411),  Expect = 0.0
 Identities = 485/521 (93%), Gaps = 3/521 (1%)
 Strand=Plus/Plus

Query  1    TCCGACGGCAAATCTTCCGAGATAGAGGAAGCGGTGGCGAGTCTAACCATGTCTTCTAAC  60
            |||| |||| |||| || ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  57   TCCGCCGGCGAATCATCAGAGATCGAGGAAGCGGTTGCGAGTCTAACCATGTCTTCTAAC  116

Query  61   AAGATTTTGTTGACGAGTTCCGATGGCGAGTCATTCGAGATCGACGAAGCGGTGGCGCGT  120
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  117  AAGATTTTGTTGACGAGTTCCGATGGCGAGTCTTTCGAGATCGACGAAGCGGTGGCGCGT  176

Query  121  AAGTTTCAGATCATAGCGCACATGATCGAAGATGACTGCGCCGGCAAAGCAATTCCGATT  180
            ||||||| |||||||| ||||||||| || ||| ||||||||||  ||||||||||| ||
Sbjct  177  AAGTTTCTGATCATAGTGCACATGATGGAGGATAACTGCGCCGGTGAAGCAATTCCGCTT  236

Query  181  GACAACGTCACCGGAGATATCCTCTCTAAGATAATCGAGTACGCGAAGAAGCACGTCGTT  240
            || || |||||||| ||||||||||| |||||||||||||||||||||| |||||||  |
Sbjct  237  GAAAATGTCACCGGGGATATCCTCTCCAAGATAATCGAGTACGCGAAGATGCACGTCAAT  296

Query  241  GAACCT-G--ATGAAGACGAAGACGAGGAGGCGAAGAAGAAGCTGGATTCATGGGACGCT  297
            |||||| |  | ||||||||||||||||||||||||||||| || || || |||||||||
Sbjct  297  GAACCTAGTGAAGAAGACGAAGACGAGGAGGCGAAGAAGAATCTAGACTCGTGGGACGCT  356

Query  298  AAGTTCGTGGAAAAGCTAGATCTGGAGACGATTTTCAAAATCATTCTCGCTGCCAACTAC  357
            |||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  357  AAGTTCATGGAAAAGCTAGATCTGGAGACCATCTTCAAAATCATTCTCGCTGCCAACTAC  416

Query  358  CTAAACTTCGAAGGACTTCTCGGTTTCGCTAGCCAGACGGTTGCTGATTACATCAAGGAC  417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  417  CTAAACTTCGAAGGACTTCTCGGTTTCGCTAGCCAGACGGTTGCTGATTACATCAAGGAC  476

Query  418  AAAACACCAGAGGAAGTTCGAGAGATTTTCAACATCGAGAACGATTTCACGCCTGAAGAA  477
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  477  AAAACACCAGAGGAAGTACGAGAGATTTTCAACATCGAGAACGATTTCACGCCTGAAGAA  536

Query  478  GAGGAAGAGATTCGTAAGGAGAACGCTTGGACTTTTAATGA  518
            |||||||||||||| |||||||| |||||||||||||||||
Sbjct  537  GAGGAAGAGATTCGCAAGGAGAATGCTTGGACTTTTAATGA  577



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30492127229


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5