BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471147
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10350.1 | Symbols: | DNAJ heat shock family protein | chr1... 1991 0.0
AT1G59725.1 | Symbols: | DNAJ heat shock family protein | chr1... 209 5e-53
> AT1G10350.1 | Symbols: | DNAJ heat shock family protein | chr1:3393407-3395055
REVERSE LENGTH=1433
Length=1433
Score = 1991 bits (1078), Expect = 0.0
Identities = 1318/1427 (92%), Gaps = 43/1427 (3%)
Strand=Plus/Plus
Query 1 tttttttCTATTCCAATTTCAGATTTTACTCGaaaaaaaTCTCGAATCCGATTCC-TTCT 59
||||| ||| |||||||||||||||||||| | |||| ||||||||||||||||| || |
Sbjct 13 TTTTTCTCTCTTCCAATTTCAGATTTTACTGGCAAAATATCTCGAATCCGATTCCTTTTT 72
Query 60 TCTCTTCCGCAATCTCTGTGAAATCTCAA-----ACTACAAAATTTCGATTTCAGCTG-A 113
||||||| ||||||||| ||||||||||| || ||||||||||||| |||||| |
Sbjct 73 TCTCTTCTGCAATCTCTTTGAAATCTCAAGCTTCTCTTCAAAATTTCGATTACAGCTGAA 132
Query 114 GATTCTCTCTATTTTGTGGTTTTGACtttttttttttttATTTTGGTTTGGTGAAAGATT 173
||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||
Sbjct 133 GATTCTCTCGATTTTCTGGTTTTGAC----TTTTTTTTT-GTTTGGTTTGGTGAAAGATT 187
Query 174 TGGATC-AATGGGGGTAGATTACTACAATGTGCTAAAAGTGAATCGAAACGCTAACGAAG 232
|||||| ||||||||| |||||||||||||| || |||||||||||||| ||||||||||
Sbjct 188 TGGATCAAATGGGGGTGGATTACTACAATGTTCTGAAAGTGAATCGAAATGCTAACGAAG 247
Query 233 ATGATCTGAAGAAGTCTTACCGGAGAATGGCTATGAAATGGCACCCTGACAAAAACCCTA 292
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 248 ATGATCTGAAGAAGTCTTACCGGCGAATGGCTATGAAATGGCACCCTGACAAAAACCCTA 307
Query 293 CGACCAAGAAAGAAGCTGAAGCTAAGTTCAAGCAGATCTCTGAAGCTTATGACGTTTTGA 352
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 308 CGAGCAAGAAAGAAGCTGAAGCTAAGTTCAAGCAGATCTCTGAAGCTTACGACGTCTTGA 367
Query 353 GCGATCCTCAGAGACGTCAGATCTACGATCAGTACGGTGAAGAAGGTCTTAAATCCACCG 412
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 368 GCGATCCTCAGAGACGTCAGATCTACGATCAGTACGGAGAAGAAGGTCTTAAATCCACCG 427
Query 413 ATTTACCTACTGCGGCGGAGACAGCGGCGCATCAGCAGCAGCGGAGCTACTCTTCTAGCA 472
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 428 ATTTACCTACTGCGGCGGAGACGGCGGCGCATCAGCAGCAGCGGAGCTACTCTTCTAGCA 487
Query 473 ACTCTGAGTTTCGGTATTATCCGCGTGATGCTGAAGATATCTTTGCTGAGTTTTTCGGCG 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 ACTCTGAGTTTCGGTATTATCCGCGTGATGCTGAAGATATCTTTGCTGAGTTTTTCGGCG 547
Query 533 AATCCGGAGATACTTTTGGCGGAGGGAGTAGCGGAAGGACACGTGGAGATGGCGGTGACG 592
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 548 AATCCGGTGATGCTTTTGGCGGAGGGAGTAGCGGAAGGACACGTGGAGATGGCGGTGATG 607
Query 593 GTGGCGGCCGGAGATTTAAAAGTGCAGAAGCAGGGAGCCAGGCTAATAG--A-A------ 643
||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 608 GTGGCGGTCGGAGATTTAAAAGTGCAGAAGCAGGGAGCCAGGCTAATAGAAAGACGCCGC 667
Query 644 --A-G-AC------TC--CGCCGCCGGCGAATAGGAAAGCGCCGGCTATTGAGAGTAAAT 691
| | || | ||||||||||||||||||| || |||||||||||||||||||
Sbjct 668 CGACGAACAAAAAAACGACGCCGCCGGCGAATAGGAAGGCTCCGGCTATTGAGAGTAAAT 727
Query 692 TGGCTTGCACACTGGAGGAGCTCTACAAAGGTGCCAGGAAGAAGATGCGCATTTCTCGCG 751
||||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct 728 TGGCTTGCACATTGGAGGAGCTCTACAAAGGTGCAAAGAAGAAGATGCGAATTTCTCGCG 787
Query 752 TTGTTCCCGATGATTTTGGAAAGCCAAAGACTGTCCAAGAGATTTTGAAGATAGACATAA 811
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 788 TTGTTCCTGATGATTTTGGAAAGCCAAAGACAGTCCAAGAGATATTGAAGATAGACATAA 847
Query 812 AACCAGGTTGGAAGAGAGGCACAAAGATAACTTTCCCAGAGAAAGGCAACCAAGAACCTG 871
||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 848 AACCAGGTTGGAAGAAAGGCACAAAGATCACTTTTCCAGAGAAAGGCAACCAAGAACCTG 907
Query 872 GTGTCACTCCCGCGGATCTCATATTCGTGGTAGACGAGAAACCGCATTCGGTATTCAAAA 931
|||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 908 GTGTCACTCCTGCGGATCTTATATTCGTGGTTGACGAGAAACCGCATTCGGTATTCAAGA 967
Query 932 GAGACGGTAACGATCTGATTCTCGAGAAGAAAGTCTCTCTTATAGATGCTTTAACTGGCC 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 968 GAGACGGTAACGATCTGATTCTCGAGAAGAAAGTCTCTCTTATAGATGCTTTAACCGGTC 1027
Query 992 TCACCATTAGCGTAACCACTCTAGACGGGAGGAACCTAACGATCCCGGTTCTGGATATCG 1051
|||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 1028 TCACCATTAGCGTAACGACTCTAGACGGGAGGAGCCTAACTATCCCGGTGCTGGATATCG 1087
Query 1052 TAAAACCGGGTCAGGAGATTGTGATTCCAAATGAAGGAATGCCTACTAAAGACCCTTTGA 1111
||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 1088 TAAAACCGGGTCAGGAGATTGTGATCCCGAATGAGGGAATGCCTACTAAAGACCCTTTGA 1147
Query 1112 AGAGAGGAGACCTTAGAGTCACCTTTGAGATCTTGTTCCCGTCAAGGCTAACGTCAGAAC 1171
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1148 AGAGAGGAGACCTTAGAGTTACCTTTGAAATCTTGTTCCCGTCAAGGCTAACGTCAGAAC 1207
Query 1172 AGAAGAATGACCTCAAGAGAGTTCTTGGTGGAAGCTGATGAGTTGGCATTTAGTTTTCAA 1231
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1208 AGAAGAATGACCTCAAGAGAGTTCTTGGTGGAAGCTGATGAGTTGACGTTTAGTTTTCAA 1267
Query 1232 GTAAGCTATTGATCTTCTTTAACAACGGATTCTACAGGAAGCTG--A-TCAATTCAGTGT 1288
|||||||||||||||||||||||||||||||| |||||||| || | ||| || |||||
Sbjct 1268 GTAAGCTATTGATCTTCTTTAACAACGGATTCCACAGGAAGTTGCTAGTCATTTGAGTGT 1327
Query 1289 ACATACATGTACGTTTTTCCTTTGTAAACTTCTTGTGTTATAAGAAAGACTA-AAAACCC 1347
|||||||| |||||||||||||||||||||| ||||||||||||| || | |||||||
Sbjct 1328 ACATACATTTACGTTTTTCCTTTGTAAACTT---GTGTTATAAGAAAAACAAGAAAACCC 1384
Query 1348 GAATCGAATAAGACTGGATAT-CGGAGATCTAATAATGGCTGCCACA 1393
|||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1385 AAATCGAATAAGACTGGATATGCGG-GATCTAATAATGGCTGCCACA 1430
> AT1G59725.1 | Symbols: | DNAJ heat shock family protein | chr1:21950738-21952210
FORWARD LENGTH=996
Length=996
Score = 209 bits (113), Expect = 5e-53
Identities = 190/227 (84%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 181 ATGGGGGTAGATTACTACAATGTGCTAAAAGTGAATCGAAACGCTAAC-GAAGATGATCT 239
|||||||| |||||||||||||| || || ||||||| || ||| ||| ||||| |||||
Sbjct 1 ATGGGGGTTGATTACTACAATGTACTCAACGTGAATCCAAGCGC-AACGGAAGACGATCT 59
Query 240 GAAGAAGTCTTACCGGAGAATGGCTATGAAATGGCACCCTGACAAAAACCCTACGAC--- 296
||||| || || || ||| | || ||||||||||||||||||||||||||||| |
Sbjct 60 AAAGAAATCGTATCGAAGACTTGCAATGAAATGGCACCCTGACAAAAACCCTACTTCAAT 119
Query 297 CAAGAAAGAAGCTGAAGCTAAGTTCAAGCAGATCTCTGAAGCTTATGACGTTTTGAGCGA 356
|||| |||||||||||||||||||||| || ||||| |||||||| || ||||| |||||
Sbjct 120 CAAGCAAGAAGCTGAAGCTAAGTTCAAACAAATCTCCGAAGCTTACGATGTTTTAAGCGA 179
Query 357 TCCTCAGAGACGTCAGATCTACGATCAGTACGGTGAAGAAGGTCTTA 403
|||| | | |||||||||||| ||||| || |||||||| || ||||
Sbjct 180 TCCTAACAAACGTCAGATCTATGATCAATATGGTGAAGACGGACTTA 226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68624145015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5