BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471148
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10360.1 | Symbols: ATGSTU18, GST29, GSTU18 | glutathione S-... 1136 0.0
AT1G10370.1 | Symbols: GST30, ATGSTU17, GST30B, ERD9 | Glutathi... 638 0.0
> AT1G10360.1 | Symbols: ATGSTU18, GST29, GSTU18 | glutathione
S-transferase TAU 18 | chr1:3395558-3396849 REVERSE LENGTH=907
Length=907
Score = 1136 bits (615), Expect = 0.0
Identities = 691/729 (95%), Gaps = 0/729 (0%)
Strand=Plus/Plus
Query 1 TTCTTAATCTCCGGGATAAAATGGCGACTGACGACGTGAAGCTGATCGGCTCATGGGCGA 60
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 24 TTCTTAATCTCCGGGATAAAATGGCGACCGAGGACGTGAAGCTGATCGGCTCATGGGCGA 83
Query 61 GTGTTTTCGTCATGAGGGCGAGGATTGCTCTCCACCTCAAATCTATTAGCTACGAATTCC 120
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 84 GTGTTTACGTCATGAGGGCGAGGATCGCTCTCCACCTCAAATCTATTAGCTACGAATTCC 143
Query 121 TCCAGGAGACGTTTGGTTCAAAGAGCGAATTGCTCCTCAAATCAAACCCGGTTCACAAGA 180
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TTCAGGAGACGTATGGTTCAAAGAGCGAATTGCTCCTCAAATCAAACCCGGTTCACAAGA 203
Query 181 AGATGCCGGTTCTGATTCACGCTGACAAACCGGTGTGCGAGTCCAACATCATCGTTCAGT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 204 AGATGCCGGTTCTGATTCACGCTGACAAACCGGTGTGCGAGTCCAACATCATCGTTCATT 263
Query 241 ACATCGACGAGGCTTGGAACTCATCTGGACCGTCCATTCTCCCGTCCCATCCCTACGACC 300
| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 264 ATATCGACGAGGCTTGGAACTCTTCTGGACCTTCCATTCTCCCGTCCCATCCATACGACC 323
Query 301 GGGCCATCGCTCGGTTTTGGGCTGCCTACATAGACGATCAGTGGTTTATCTCTCTGAGAA 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 324 GGGCCATTGCTCGGTTTTGGGCTGCCTACATAGACGATCAGTGGTTTATCTCTGTGAGAA 383
Query 361 GTATCCTAACAGCTCAAGGAGAAGAAGAGAAGAATGCAGCCATAGCTCAAGTCGAAGAAA 420
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 384 GTATCCTAACAGCTCAAGGAGACGAAGAGAAGAAAGCAGCCATAGCTCAAGTTGAAGAAA 443
Query 421 GGACCGAGATTCTGGAGAAAGCATTCATCGATTGCAGCAAAGGAAAACCGTTCTTCAATG 480
||||| || |||||||||||||||||| |||||| ||| ||||||||||||||||||| |
Sbjct 444 GGACCAAGCTTCTGGAGAAAGCATTCAACGATTGTAGCCAAGGAAAACCGTTCTTCAACG 503
Query 481 GTGACCATATCGGTTACCTCGACATTGCCCTCGGAAGTTTCTTGGGTTGGTGGAGAGTTG 540
||||||||||||||||||||||||||||| | || || ||||| |||||||||||||| |
Sbjct 504 GTGACCATATCGGTTACCTCGACATTGCCTTGGGGAGCTTCTTAGGTTGGTGGAGAGTCG 563
Query 541 TCGAGTTGGATGCCAATCATAAATTTCTTGATGAGACCAAGGCTCCTTCTCTAGCCAAAT 600
|||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 564 TCGAGTTGGATGCCAATCATAAATTTCTTGATGAGACCAAAACTCCCTCTCTAGTCAAAT 623
Query 601 GGGCAGAGCGGTTCTGTGATGACCCCGCTGTGAAACCTATAATGCCCGAGATTACAAAGC 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 624 GGGCAGAGCGGTTCTGTGATGATCCCGCTGTGAAACCTATAATGCCCGAGATTACAAAGC 683
Query 661 TCGCAGAATTCGCAAGGAAGCTCTTTCCTAAGCCGCAAGCATAAACTGGTTTAGTAGGAT 720
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 684 TCGCTGAATTCGCAAGGAAGCTCTTTCCTAAGCGGCAAGCATAAACTGGATTACTAGGAT 743
Query 721 GCAAGTTAT 729
| |||||||
Sbjct 744 GTAAGTTAT 752
> AT1G10370.1 | Symbols: GST30, ATGSTU17, GST30B, ERD9 | Glutathione
S-transferase family protein | chr1:3397081-3398358 REVERSE
LENGTH=962
Length=962
Score = 638 bits (345), Expect = 0.0
Identities = 580/694 (84%), Gaps = 14/694 (2%)
Strand=Plus/Plus
Query 18 AAAATGGCGA-CTGACGACGTGAAGCTGATCGGCT-CATGGGCGAGT-GTTTTCGTCATG 74
|||||||| | | | |||||||||||||||||| | ||||||||||| ||| || |||
Sbjct 83 AAAATGGCAAGCAG-CGACGTGAAGCTGATCGG-TGCATGGGCGAGTCCCTTT-GTGATG 139
Query 75 AGGGCGAGGATTGCTCTCCACCTCAAATCTATTAGCTACGAATTCCTCCAGGAGACGTTT 134
||| ||||||||||||| ||||||| ||| | |||||| |||||||| |||||||||
Sbjct 140 AGGCCGAGGATTGCTCTAAACCTCAAGTCTGTCCCCTACGAGTTCCTCCAAGAGACGTTT 199
Query 135 GGTTCAAAGAGCGAATTGCTCCTCAAATCAAACCCGGTTCACAAGAAGATGCCGGTTCTG 194
|| || |||||||| ||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 200 GGGTCTAAGAGCGAGTTGCTTCTTAAATCAAACCCGGTTCACAAGAAGATCCCGGTTCTG 259
Query 195 ATTCACGCTGACAAACCGGTGTGCGAGTCCAACATCATCGTTCAGTACATCGACGAGGCT 254
|||| ||||| ||||||||| | |||||||||||||||||| |||| ||||| || ||
Sbjct 260 CTTCATGCTGATAAACCGGTGAGTGAGTCCAACATCATCGTTGAGTATATCGATGACACT 319
Query 255 TGGAACTCATCTGGACCGTCCATTCTCCCGTCCCATCCCTACGACCGGGCCATCGCTCGG 314
|||| |||||||||||||||||||||||| ||| |||| ||||| |||||||| ||||||
Sbjct 320 TGGAGCTCATCTGGACCGTCCATTCTCCCTTCCGATCCTTACGATCGGGCCATGGCTCGG 379
Query 315 TTTTGGGCTGCCTACATAGACGATCAGTGGTTTATCTCTCTGAGAAGTATCCTAACAGCT 374
|| |||||||| ||||| ||||| |||||||| || |||| ||| || |||||| |||
Sbjct 380 TTCTGGGCTGCTTACATCGACGAAAAGTGGTTTGTCGCTCTAAGAGGTTTCCTAAAAGC- 438
Query 375 C-AAGGAGAAGAAGAGAAGAATGCAGCCATAGCTCAAGTCGAAGAAAGGACCGAGATTCT 433
| |||||||||||||||||| || | ||||||||| | |||||| ||| | | ||||
Sbjct 439 CGGAGGAGAAGAAGAGAAGAAAGCTGTGATAGCTCAACTAGAAGAAGGGAATGCGTTTCT 498
Query 434 GGAGAAAGCATTCATCGATTGCAGCAAAGGAAAACCGTTCTTCAATGGTGACCATATCGG 493
|||||| || ||||| ||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 499 GGAGAAGGCGTTCATTGATTGCAGCAAAGGAAAACCGTTCTTCAACGGTGACAACATCGG 558
Query 494 TTACCTCGACATTGCCCTCGGAAGTTTCTTGGGTTGGTGGAGAGTTGTCGAGTTGG-ATG 552
||||||||||||||| ||||| | ||||||| ||||| |||||| |||||| | | |
Sbjct 559 TTACCTCGACATTGCTCTCGGGTGCTTCTTGGCTTGGTTGAGAGTCACCGAGTTAGCA-G 617
Query 553 CCAA-TCATAAATTTCTTGATGAGACCAAGGCTCCTTCTCTAG-CCAAATGGGCAGAGCG 610
|| | ||||| ||||||||||| ||||| | |||||| | | |||||||||| |||
Sbjct 618 TCAGCT-ATAAAATTCTTGATGAGGCCAAGACACCTTCTTT-GTCCAAATGGGCTGAGAA 675
Query 611 GTTCTGTGATGACCCCGCTGTGAAACCTATAATGCCCGAGATTACAAAGCTCGCAGAATT 670
|||||| |||| |||||||| |||||| | |||||||||| | ||||||| || |||||
Sbjct 676 TTTCTGTAATGATCCCGCTGTAAAACCTGTCATGCCCGAGACTGCAAAGCTTGCTGAATT 735
Query 671 CGCAAGGAAGCTCTTTCCTAAGCCGCAAGCATAA 704
||||| |||| |||||||||||||||| || |||
Sbjct 736 CGCAAAGAAGATCTTTCCTAAGCCGCAGGCCTAA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5