BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471154
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10400.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 2261 0.0
> AT1G10400.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:3414852-3416358 REVERSE LENGTH=1421
Length=1421
Score = 2261 bits (1224), Expect = 0.0
Identities = 1350/1412 (96%), Gaps = 4/1412 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTTAGAAAAAGTTCACGTGGTTTTGTTCCCATACTTGTCCAAAGGGCACATGATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTTAGAAAAAGTTCACGTGGTTTTGTTCCCATACTTGTCCAAAGGGCACATGATT 60
Query 61 CCTATGCTCCAATTAGCTCGTCTCCTCTTATCCCACTCCTTCGCCGGAGACATCTCTGTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CCTATGCTCCAATTAGCTCGTCTCCTCTTATCCCACTCCTTCGCCGGAGACATCTCCGTC 120
Query 121 ACCGTCTTCACCACTCCTTTGAACCGTCCTTTCGTTGTTGACTCACTCTCCGGCACCAAC 180
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 121 ACCGTCTTCACCACTCCTTTGAACCGTCCTTTCATCGTTGACTCACTCTCCGGCACCAAA 180
Query 181 GCGACCATCGTCGACGTCCCTTTCCCCGATAAAGTCCCGGAGATCCCACCCGGCGTCGAG 240
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 181 GCGACCATCGTCGACGTACCTTTCCCTGATAACGTCCCGGAGATCCCACCCGGCGTCGAG 240
Query 241 TGCACCGACAAACTCCCTGCTTTGTCGTCCACCCTCTTCGTTCCTTTCACTAGAGCCACC 300
||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 241 TGCACTGACAAACTCCCTGCTTTGTCGTCCTCCCTCTTCGTTCCTTTCACAAGAGCCACC 300
Query 301 AAGTCAATGCAGGCAGACTTTGAGCGAGAACTCATGTTACTGCCACGTGTCAGTTTCATG 360
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 301 AAGTCAATGCAGGCAGACTTTGAGCGAGAGCTCATGTCACTGCCACGTGTCAGTTTCATG 360
Query 361 GTCTCAGACGGTTTCTTGTGGTGGACGCTAGAGTCAGCTCGAAAGCTAGGGTTTCCTCGG 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 GTCTCAGACGGTTTCTTGTGGTGGACGCAAGAGTCAGCTCGAAAGCTAGGGTTTCCTCGG 420
Query 421 ATTGTTTTCTTGGGTATGAACTGCGCTTCCACCGTTATATGTGACAGTGTTTTTCAAAAC 480
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTGTTTTCTTTGGTATGAATTGCGCTTCCACCGTTATATGTGACAGTGTTTTTCAAAAC 480
Query 481 CAGCTTCTATCTAATGTTAAGTCCGAGACGGAGCCCGTTTCTGTACCCGAGTTTCCGTGG 540
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 481 CAGCTTCTATCTAATGTTAAGTCCGAGACGGAGCCAGTTTCTGTACCGGAGTTTCCGTGG 540
Query 541 ATTAAGGTTAGGAAATGTGATTTCGTTAAAGATATGTTTGATTCAAAATCCACCACAGAT 600
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 541 ATTAAGGTTAGGAAATGTGATTTCGTTAAAGATATGTTTGATCCAAAAACCACCACAGAT 600
Query 601 CCTGGATTCAAGCTTATCCTAGATCAAGTCACGTCTATGAATCAAAGTCAAGGTATCATA 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 CCTGGATTCAAGCTTATCCTAGATCAAGTCACGTCTATGAATCAAAGCCAAGGTATCATA 660
Query 661 TTCAACACGTTCGACGACCTTGAACCCGTGTTTATAGATTTCTACAAGCGTAATCGCGAG 720
||||| || || ||||||||||||||||||||||| ||||||||||||||||| ||| |
Sbjct 661 TTCAATACATTTGACGACCTTGAACCCGTGTTTATTGATTTCTACAAGCGTAAACGCAAA 720
Query 721 CTCAAGCCCTGGACACTTGGACCGCTTTGTTGTGTAAATAACTTCTTGGAGT-ATGAAGT 779
||||||| ||| || ||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 721 CTCAAGCTTTGGGCAGTTGGACCGCTTTGTTACGTAAATAACTTCTTGGA-TGATGAAGT 779
Query 780 AGAAGAGATGGTCAAACCTAGTTGGATGAAATGGCTTGATAAAAAGAGAGACAAGGGATG 839
|||||||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 780 AGAAGAGAAGGTCAAACCTAGTTGGATGAAATGGCTAGATGAAAAGCGAGACAAGGGATG 839
Query 840 CAATGTTCTCTACGTGGCTTTCGGGTCACAAGCCGAGATCTCGAGGA-AACAACTAGAGG 898
||||||||| || ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 840 CAATGTTCTGTATGTGGCTTTCGGGTCACAAGCCGAGATCTCGA-GAGAACAACTAGAGG 898
Query 899 AGATTGCGTTAGGGTTGGAAGAATCGAAGGTGAGCTTCTTGTGGGTGGTCAAAGGAAATG 958
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 AGATTGCGTTAGGGTTGGAAGAATCGAAGGTGAACTTCTTGTGGGTGGTCAAAGGAAATG 958
Query 959 AAATAGGAAAAGGGTTTGAAGAGAGAGTGGGAGAAAGAGGAATGATGGTGAGAGATGAAT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAATAGGAAAAGGGTTTGAAGAGAGAGTGGGAGAAAGAGGAATGATGGTGAGAGATGAAT 1018
Query 1019 GGGTTGATCAGAGGAAGATATTAGAGCACGAGACTGTTAGAGGGTTCTTGAGTCATTGTG 1078
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1019 GGGTTGATCAGAGGAAGATATTAGAGCACGAGAGTGTTAGAGGGTTCTTGAGCCATTGTG 1078
Query 1079 GGTGGAATTCTATGATGGAGAGCATTTGCTCAGAGGTTCCAATCTTGGCGTTTCCTTTAG 1138
||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 GGTGGAATTCTCTGACGGAGAGCATTTGCTCGGAGGTTCCAATCTTGGCGTTTCCTTTAG 1138
Query 1139 CGGCAGAGCAACCTCTGAATGCGATATTGGTGGTGGAAGAGCTGAGAGTGGCGGAAAGAG 1198
| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1139 CAGCGGAGCAACCTCTGAATGCGATTTTGGTGGTGGAAGAGCTGAGAGTGGCGGAGAGAG 1198
Query 1199 TGGTGGCGGCGAGTGAAGGACTTGTgagaagagaagagattgcagagaaagtgaaggagt 1258
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGTGGCGGCGAGTGAAGGGGTTGTGAGAAGAGAAGAGATTGCAGAGAAAGTGAAGGAGT 1258
Query 1259 tgatggagggagagaaagggaaagagCTAAGGAGGAATGTCGAGGCATATGGTAAGATGG 1318
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1259 TGATGGAGGGAGAGAAAGGGAAAGAGCTGAGGAGGAATGTCGAGGCATATGGTAAGATGG 1318
Query 1319 CGAAGAAGGCTTTGAAGGATGGAATTGGTTCGTCTTGGAAGAATTTAGACAACCTTATCA 1378
|||||||||||||| |||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 1319 CGAAGAAGGCTTTGGAGGAAGGTATTGGTTCGTCTAGGAAGAATTTAGACAACCTTATCA 1378
Query 1379 ACCAGTTTTGTAACAATGGAACATGATGATGT 1410
|| |||||||||||||||||||||||||||||
Sbjct 1379 ACGAGTTTTGTAACAATGGAACATGATGATGT 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5