BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471156
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10417.1 | Symbols: | Encodes protein with unknown function... 767 0.0
> AT1G10417.1 | Symbols: | Encodes protein with unknown function
whose expression is repressed by inoculation with Agrobacterium
tumerifaciens. | chr1:3424186-3427457 REVERSE LENGTH=1641
Length=1641
Score = 767 bits (415), Expect = 0.0
Identities = 438/449 (98%), Gaps = 2/449 (0%)
Strand=Plus/Plus
Query 268 CTTCAGAAAACTTTGCAGGTCAAAGATTTAGCTGTAGAGAACTTAATTTCTGAAAAAGAG 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CTTCAGAAAACTTTGCAGGTCAAAGATTTAGCTGTAGAGAACTTAATTTCTGAAAAAGAG 882
Query 328 GCATTGTATTCTGAAGTGAAGGGTTTAGAGATGATTTTACAGCGGATTCAGGAGTCTGTA 387
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 883 GCATTGTATTCTGAAATGAAGGGTTTGGAGATGATTTTACAGCGGATTCAGGAGTCTGTA 942
Query 388 TCCCTTATGACTGAAGAGGATAGAAAGGTGTTTACATCAATACTGACATTCGAACAAGGT 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TCCCTTATGACTGAAGAGGATAGAAAGGTGTTTACATCAATACTGACATTCGAACAAGGT 1002
Query 448 TCCAATGAGAAAAACAAAAGATCCAGGCACAATGACACAGTTGACAAAATGGAGGAACTT 507
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TCCGATGAGAGAAACAAAAGATCCAGGCACAATGACACAGTTGACAAAATGGAGGAACTT 1062
Query 508 CTATGTGAAGCTCCTGTTATGCATTCTCAAGAAAACTCAGTAAAAGTTATTCCATCAGCG 567
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 CTATATGTAGCTCCTGTTATGCATTCTCAAGAAAACTCAGTAAAAGTTATTCCATCAGCG 1122
Query 568 TCTCCAAGGTGTCAGCACCAAAACACAGACTGCAGAAT-GATACAAGATGATGATCATCA 626
||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 1123 TCTCCAAGGTGTCAGCACCAAAAAACAGACTGCAGA-TCGATACAAGATGATGATCATCA 1181
Query 627 ACTGGATTCGGCTGAGTACCTGCTGCATAACACTGTCAGTGGCCATTGGCAGAGTACTAA 686
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1182 ACTGGATTCGGCTGAGTACCTGCAGCATAACACTGTCAGTGGCCATTGGCAGAGTACTAA 1241
Query 687 TAACCACAACCACTTTGAGATTGAGGCAA 715
||||||||||||||||||| |||||||||
Sbjct 1242 TAACCACAACCACTTTGAGCTTGAGGCAA 1270
Score = 267 bits (144), Expect = 2e-70
Identities = 164/174 (94%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 1 ATGGACCATGTCTCTACATATGAAAAAGTGTTTATAGAGAACATCAGAGCTTTAGAAGAG 60
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 649 ATGGACCATGTCTCTACTTATGAAAAAGTGTTTATAGAGAACATCAGAGCGTTAGAAGAG 708
Query 61 AAACTTGAATATCATGAAACAGAATTGCAGAGCAAGGAGAATATAATATCAGAGCTTTCG 120
|||||| ||| |||||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct 709 AAACTTAAATGCCATGAAACAGAACTGCAGAGCAAGGATAATATAATATCAGAGCTCTCC 768
Query 121 GCTCAGCTGGAATCAGAAAAGATTAAAAATGAACATCAACATCAAGTCGAAGAG 174
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 769 GCTCAGCTGGAATCAGAAAAGAGTAAAAATGAACATCAACATCAAGTCGAAGAG 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5