BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471157
Length=354
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10417.1 | Symbols: | Encodes protein with unknown function... 291 4e-78
> AT1G10417.1 | Symbols: | Encodes protein with unknown function
whose expression is repressed by inoculation with Agrobacterium
tumerifaciens. | chr1:3424186-3427457 REVERSE LENGTH=1641
Length=1641
Score = 291 bits (157), Expect = 4e-78
Identities = 188/201 (94%), Gaps = 9/201 (4%)
Strand=Plus/Plus
Query 1 ATGGAGCTGCTCAAGTTGTCAAAATTCAAATTGCAGCTTCAGTCAATGATCGGAGAAGTG 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATGCTCAAGTTGTCAAAATTCAAATTGCAGCTTCAGTCAATGATCGGAGAAGTG 60
Query 61 CGAGATCTGCGTGTAAGAAGAATGAGGTTTCTATACATCTATGGATTGTGTATCTTCTTC 120
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAGATCTGCGTGTAAGGAGAAAGAGGTTTCTATACATCTATGGATTGTGTATCTTCTTC 120
Query 121 GCTCCACCA-TTT-TCTCT-CTTCGTCT-C--CTTC--C-ACTTTACTACCGGCGTTTTT 171
||||||||| ||| ||||| |||| ||| | |||| | ||||||||||||||||||||
Sbjct 121 GCTCCACCAGTTTCTCTCTTCTTCTTCTTCGTCTTCTTCCACTTTACTACCGGCGTTTTT 180
Query 172 GCAGGAAAGGGAGCGATCAGT 192
|||||||||||||||||||||
Sbjct 181 GCAGGAAAGGGAGCGATCAGT 201
Score = 172 bits (93), Expect = 2e-42
Identities = 114/124 (92%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 184 GCG-ATCA-GTTCTTCAATCAATAAACAGAAGCAGACGGAGGAGGAATACATGAGGAAAG 241
||| |||| ||||||| ||||||||||||||||| ||||||||||| | ||| |||||||
Sbjct 221 GCGAATCAGGTTCTTCGATCAATAAACAGAAGCAAACGGAGGAGGACTGCATCAGGAAAG 280
Query 242 TGCATGAGCTTCAAGCTGAGTTAGCTTCTTCTAGAGAAACACAGGAGGCACTCGAGAGGA 301
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 281 TGCAGGAGCTTCAAGCTGATTTAGCTTCTTCTAGAGAAACACAGGAGGCACTCGAGAGAA 340
Query 302 AGGT 305
||||
Sbjct 341 AGGT 344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16588357170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5