BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471159
Length=3734
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10450.1 | Symbols: SNL6 | SIN3-like 6 | chr1:3431780-343837... 5686 0.0
AT1G59890.2 | Symbols: SNL5 | SIN3-like 5 | chr1:22043829-22051... 1496 0.0
AT1G10250.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 444 3e-123
> AT1G10450.1 | Symbols: SNL6 | SIN3-like 6 | chr1:3431780-3438370
FORWARD LENGTH=4024
Length=4024
Score = 5686 bits (3079), Expect = 0.0
Identities = 3492/3686 (95%), Gaps = 49/3686 (1%)
Strand=Plus/Plus
Query 76 AGAAATCAGTCTGCGGGAGAAA---GAGGAAGAC-GAAGATGAAGAGAGTTAGAGAAGAT 131
|||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||
Sbjct 312 AGAAATCAGTCTGCGGGAGAAAGTGGAAGAAGACTGAAGATGAAGAGAGCTAGAGAAGAT 371
Query 132 GTTCACACTGAAC-CT-AATAAGCGAAGGCCTGAAGTTTCGTCTCGAGGAGAAACAAACA 189
|||||||||| || || || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 372 GTTCACACTG-ACACTCAA-AAGCGAAAGCCTGAAGTTTCGTCTCGAGGAGAAACAAACA 429
Query 190 AGCAACCTCGAACCGTCGATGCCCTAACGTATCTCAAAGCTGTTAAGGACATTTTTCAAG 249
||| |||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 430 AGCTACCTCGAACCATCGATGCCCTAACGTATCTCAAAGCTGTGAAGGATATTTTTCACG 489
Query 250 ACAATAAAGAGAAATATGAGTCTTTCCTTGAGCTCATGAAGGAGTTTAAAGCTCATACAA 309
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||
Sbjct 490 ACAATAAAGAGAAATATGAGTCATTCCTGGAGCTCATGAAGGAGTTCAAAGCTCAGACAA 549
Query 310 TCGACACTGATGGTGTCATTGAAAGAATTAAAGTATTGTTCAAGGGTTATAAGGACCTAC 369
|||||||| |||||||||| ||||| |||||||| |||||||||||||| | ||||||||
Sbjct 550 TCGACACTAATGGTGTCATAGAAAGGATTAAAGTGTTGTTCAAGGGTTACAGGGACCTAC 609
Query 370 TTTTAGGTTTTAATACTTTCTTGCCCAAAGGCTATAGAATAACCCTTCTGCCGGAGGAAG 429
|||| |||||||||||||||||||||||||| |||| ||||||||||||||| |||||||
Sbjct 610 TTTTGGGTTTTAATACTTTCTTGCCCAAAGGGTATAAAATAACCCTTCTGCCAGAGGAAG 669
Query 430 AGAAGCCTAAGGTCCGGGTGGATTTCAAAGACGCTATCGGTTTCGTCACCAAGATTAAGA 489
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 AGAAGCCTAAGATCCGGGTGGATTTCAAAGACGCTATCGGTTTCGTCACCAAGATTAAGA 729
Query 490 CGAGGTTCGGAGATGATGAACATGCGTATAAAAGGTTTCTAGACATCTTGAACATGTATA 549
||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 730 CGAGGTTTGGAGATGATGAACATGCGTATAAACGGTTTCTAGACATCTTGAACTTGTATA 789
Query 550 GAAAGGA-AAGAAAGTCCATCTCTGAGGTCTACGAAGAGGTTACTATGTTATTCAAGGGT 608
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GAAAGGAGAA-AAAGTCCATCTCTGAGGTCTACGAAGAGGTTACTATGTTATTCAAGGGT 848
Query 609 CATGAAGATCTGCTCATGGAGTTCGTTAATTTCTTACCTAACTGTCCAGAATCAGCTCCC 668
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 849 CATGAAGATCTGCTTATGGAGTTCGTTAATTTCTTACCTAATTGTCCAGAATCAGCTCCC 908
Query 669 TCGGCAAATAATGCAGTGCCGCGTCACAAGGGCACTGCAATTACTGCCATGCATTCTGAT 728
||| |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 909 TCGACAAAGAATGCAGTACCGCGTCACAAGGGCACTGCAACTACTGCCATGCATTCTGAT 968
Query 729 AAGAAAAGAAAACAACGACGTAAGCTTGAGGATTATTCTGGACACTCTGATCAACGAGAA 788
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 969 AAGAAAAGAAAACAACGATGTAAGCTTGAGGATTATTCTGGACACTCTGATCAACGAGAA 1028
Query 789 GATGGTGATGAGAATCTTGTCGCTTGCTCCGCTGACTCCCCTGTTGGAGAAGGTCAGCCA 848
||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 1029 GATGGTGATGAGAATCTTGTCACTTGCTCCGCTGACTCCCCTGTCGGGGAAGGTCAGCCA 1088
Query 849 GGATACTTTCGAGATTATGAAAATAGAGAAGATACTGAAACAGATACAGCAGATAGAACT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GGATACTTTCGAGATTATGAAAATAGAGAAGATACTGAAACAGATACAGCAGATAGAACT 1148
Query 909 GAAAAAAGTGCAGCATCTGGCAGTCAAGATATCGGAAATCACAAATCGACTACCAAGTAT 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GAAAAAAGTGCAGCATCTGGCAGTCAAGATATCGGAAATCACAAATCGACTACCAAGTAT 1208
Query 969 GTGGGAACACCTATAAATGAGCTTGATCTTTCTGAGTGCACTCAGTGTACCCCAAGTTAT 1028
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1209 GTGGGAACACCTATAAATGAGCTTGATCTTTCTGAATGCACTCAGTGTACCCCAAGTTAT 1268
Query 1029 CGACTCCTGCCAAAGGATTATGCAGTTGAGATCCCAAGCTACAGAAATACACTTGGTAAA 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 CGACTCCTGCCAAAGGATTATGCAGTTGAGATCCCAAGCTACAGAAATACACTTGGTAAA 1328
Query 1089 AAGACACTCAATGACCACCTGGTATCTGTCACCTCAGGGAGTGAAGATTACTCATTCAGT 1148
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1329 AAGACACTCAATGACCACTTGGTATCTGTCACTTCAGGGAGTGAAGATTACTCATTCAGT 1388
Query 1149 CATATGCGCAAAAACCAGTATGAAGAAAGCTTGTTTCGGTGTGAGGATGACAGGTATGAA 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 CATATGCGCAAAAACCAGTATGAAGAAAGCTTGTTTCGGTGTGAGGATGACAGGTATGAA 1448
Query 1209 ATGGACATGTTACTAGGATCTGTAAGTTCAGCCATTAAACACGTGGAAATTCTTCTCGAG 1268
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1449 ATGGACATGTTACTAGGATCTGTAAGTTCAGCCATTAAACAGGTGGAAATCCTTCTCGAA 1508
Query 1269 AAGATGAACAACAATACTATCTCAGTAGACTCTACTATATGTATCGAAAAACACTTATCA 1328
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 AAGATGAACAACAACACTATCTCAGTAGACTCTACTATATGTATCGAAAAACACTTATCA 1568
Query 1329 GCTATAAACTTGAGATGCATTGAGCGGTTATACGGTGATAATGGGCTTGATGTCATGGAT 1388
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 GCTATGAACTTAAGATGCATTGAGCGGTTATACGGTGATAATGGGCTTGATGTCATGGAT 1628
Query 1389 CTTTTGAAGAAGAATATGCATAGCGCTTTACCGGTGATACTAACGCGCTTGAAGCAGAAG 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CTTTTGAAGAAGAATATGCATAGCGCTTTACCGGTGATACTAACGCGCTTGAAGCAGAAG 1688
Query 1449 CAAGAAGAATGGGCAAGGTGCCACTCTGATTTCCAGAAAGTTTGGGCTGAAGTATATGCT 1508
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1689 CAAGAAGAATGGGCAAGGTGCCATTCTGATTTCCAGAAAGTTTGGGCAGAAGTATATGCT 1748
Query 1509 AAGAATCACCATAAGTCACTAGATCATCGTAGTTTCTATTTCAAGCAGCAGGACTCTAAG 1568
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1749 AAGAATCACCATAAGTCACTAGATCATCGTAGTTTCTATTTCAAGCAGCAGGACTCCAAG 1808
Query 1569 AACTTGAGCACAAAATGTTTAGTGGCAGAAGTAAAAGATATCAGTGAGAAAAAGCATCAA 1628
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1809 AACTTGAGCACAAAATGTTTAGTGGCAGAAGTGAAAGATATCAGTGAGAAAAAGCATCAA 1868
Query 1629 GAAGATCTGCTTCAAGCTATTTCTGTTAGAGTTATGCCCTCATTTACTCCGGATTTGGAG 1688
||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||
Sbjct 1869 GAAGATCTGCTTCAAGCTATTGCTGTTAGAGTTATGCCCTTATTTACTCCTGATTTGGAG 1928
Query 1689 TTCAACTATTGTGATATACAAATTCACGAGGATCTCTATCTGCTAATCAAGTATTACTGT 1748
||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1929 TTCAATTATTGTGATACACAAATTCACGAGGATCTATATCTGCTAATCAAGTATTACTGT 1988
Query 1749 GAAGAAATATGTGCCACTGAACAATCAGATAAGGTGATGAAGCTGTGGATAACCTTTTTA 1808
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1989 GAAGAAATATGTGCCACTGAACAATCAGATAAGGTAATGAAGCTGTGGATAACCTTTTTG 2048
Query 1809 GAGCCCATGTTTGGCATTCTTTCGAGGTCTCAAGGTAACCATGCTCTGGAAGATGTGTCA 1868
|||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 2049 GAGCCCATCTTTGGCATTCTTTCGAGGTCTCAAGATAACCTTGCTCTGGAAGATGTGTCA 2108
Query 1869 AAGTTGAAAAACAACCAAGAATTGCAAGATGCATGCGTGGCAGTGAAGGACACAGCTTCT 1928
|||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct 2109 AAGTTGAAAAACAACCGAGAATTGCAAGATGCATGTTTGGCAGTGAAGGAGACAGCTTCT 2168
Query 1929 GGGTCAAACCTTAAACATCCAATATCCCCGAAACTACTGAACAAAGATAATTCAACAATG 1988
|||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||| ||||
Sbjct 2169 GGGTCAAACCGTAAACATCCAATATCCCCGAAACGACTGAGCAAAGATAATACAAAAATG 2228
Query 1989 CAAGGAAGTTCTCCTCGGAAAGATGTCTCAGCGAATATAA---TGAAAACTGCTCAGCCC 2045
|||||||||||| ||||| ||||||||||||| ||||||| |||||||||| ||||||
Sbjct 2229 CAAGGAAGTTCTTCTCGGGAAGATGTCTCAGCCAATATAAAAGTGAAAACTGCCCAGCCC 2288
Query 2046 GATAAGCTGCAGGATGATGCAGCTATGACTAATGAGGTTATTCAGTCTTCCAAACTTGTG 2105
|||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 2289 GATAAGCTTCAGGATGATGCAGCTATGACTAATGAGGTTATCCAGTCTTCCAAATTTGTG 2348
Query 2106 TCACCCAGAAATGATCAGATAATGGAGGATGAAGGGAATCATATGGTTAACGAAGCATCG 2165
||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2349 TCACCCAAAAATGACCAGATAATGGAGGATGAAGGGAATCATATGGTTAACGCAGCATCG 2408
Query 2166 GTGGAAAAGCATGAGGTTGAGCGAGAAGAGGGTGAATTATCTCCCACCCCCAGTCGTGAG 2225
||||||||||||||| | || | | ||||||||||||||||||||| |||||||||||
Sbjct 2409 GTGGAAAAGCATGAGCT--AG--A-A-GAGGGTGAATTATCTCCCACCGCCAGTCGTGAG 2462
Query 2226 CAAGGCAACTTTGAGGTTAATGGACAGAATGGCTTCAAGCCTTTACAAAAGGTGACGGAC 2285
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2463 CAAAGCAACTTTGAGGTTAATGGACAGAATGCCTTCAAGCCTTTACAAAAGGTGACGGAC 2522
Query 2286 AATGTAAGAAGCAATAAAGACCAGCAAAGTTGTGATATAAAGGGAGCAAAGAACGATACT 2345
||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||
Sbjct 2523 AATGTAAGAAGCAATAAAGACAAGCAAAGTTGTGATAAAAAGGGAGCAAAGAACAAAACT 2582
Query 2346 CGCGGTGAAGATGACAAACAAGAAAATTGTCACAAGTTATCAGAGGATAATGAGACTGCC 2405
|||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2583 CGCGCTGAAGATGACAAACAAGAAAATTGTCACAAGTTATCAGAGAATAATAAGACTGCC 2642
Query 2406 TCTGAAATGCTTGTTTCAGGAACCAAGTTTAGTTGTCATGAAGAGCACAACAGAGTTACG 2465
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
Sbjct 2643 TCTGAAATGCTTGTTTCAGGAACCAAGGTTAGTTGTCATGAAGAGAACAACAGAGTTATG 2702
Query 2466 AACTGTAATGGGCGTGGTAGTGTTGCTGGAGAGATGGCTAGTGGAAATGAAGGTGAAGAT 2525
||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||
Sbjct 2703 AACTGTAATGGGCGTGGTAGTGTGGCTGGAGAGATGGCTAATGGAAATCAAGGTGAAGAT 2762
Query 2526 GGATCCTTTGCATTTTCAGAACGGTTTCTGCAAACTGTAAAACCTGTTGCCAAGCATCTG 2585
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2763 GGATCCTTCGCATTTTCAGAACGGTTTCTGCAAACTGTAAAACCTGTTGCCAAGCATCTG 2822
Query 2586 TCTTGGCCATTGCAAGCTAGTGAAACTTGCTCCCAAAATGATTCTCAAGTTTTTTACGGG 2645
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2823 TCTTGGCCATTGCAAGCTAGTGAAACTTGCTCCCAGAATGATTCTCAAGTTTTTTACGGG 2882
Query 2646 AATGATTCCTATTATGTGCTATTTAGGCTTCATCAAATGTTGTACGAGAGAATACAAACA 2705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2883 AATGATTCCTATTATGTGCTATTTAGGCTTCATCAAATGTTGTACGAGAGAATACAAACA 2942
Query 2706 GCAAAGAAACATTCAGAAAAGAAGTGGAAGGCTCCAGATAACACAACTCCTGATTCTTAT 2765
||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 2943 GCAAAGAAACATTCAGAAAAGAAATGGAAGGCTGCAGATAACACGACTCCTGATTCTTAT 3002
Query 2766 CCCAGGTTCATGGATGCACTCTATAATTTACTTGACGGTTCTATTGACAATACAAAGTTT 2825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3003 CCCAGGTTCATGGATGCACTCTATAATTTACTTGACGGTTCTATTGACAATACAAAGTTT 3062
Query 2826 GAAGATGAGTGCCGAGCTATTTTTGGAGCACAGTCGTATGTTCTTTTCACATTGGACAAG 2885
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3063 GAAGATGAGTGCCGAGCTATTTTTGGAGCACAGTCATATGTTCTTTTCACATTGGACAAG 3122
Query 2886 CTAGTTCAGAAGTTTGTTAAGCATCTCCATGCGGTTGCATCTGATGAAACAGACACCAAG 2945
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3123 CTAGTTCAGAAGTTTGTTAAGCATCTCCATTCGGTTGCATCTGATGAAACAGACACCAAG 3182
Query 2946 CTTCTGCAACTACATGCGTATGAGAACTACAGAAAACCAGGAAAATTCTTTGATCTTGTG 3005
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 3183 CTTCTGCAACTACATGCGTATGAGAACTACAGAAAACCTGGAAAATTCTTTGATCTAGTG 3242
Query 3006 TATCATGAGAATGCATGTGCCCTCCTCCATGAGGCAAACATATACCGGATCAGATATTCA 3065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3243 TATCATGAGAATGCATGTGCCCTCCTCCATGAGGCAAACATATACCGGATCAGATATTCA 3302
Query 3066 TCAGCAGAAACACGTCTCTCGATTCAGCTTATGAACAGCGGGAACAATCAGCCTGAAGTA 3125
|||| || |||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 3303 TCAGAAGGAACACGTCTCTCGATTCAGCTTATGAACAGTGGGAACAATCAGCTTGAAGTA 3362
Query 3126 ATGGGTGTAGCGATGGAGCCAGGT-TTTGCAGATTATCTACAAAAGAAATTTCTGAAATC 3184
|||||||||||||||||||| || |||||||||||||||||||| |||| |||||||||
Sbjct 3363 ATGGGTGTAGCGATGGAGCC-GGCATTTGCAGATTATCTACAAAATAAATGTCTGAAATC 3421
Query 3185 CGTCAATGATGAAGAGAATCACGGACTGTTTCTGAAAAGGAACAAGAAGAAATTCACCAG 3244
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 3422 CGTCAATGATGAAGAGAATCACGGACTGTTTCTGAACAGGAACAAAAAGAAATTCACCAG 3481
Query 3245 CTTAGATGAATCTCGGGGGATGCCCGTTGCGATGGAAGGATTGCATATTATCAACGAGAT 3304
||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct 3482 CTTAGATGAATCTAGGGGGATGCCTGTTGCGATGGAAAGATTGAATATTATCAACGAGAT 3541
Query 3305 GGAATGTAATATGGCTTGCAGTTCTTCAAAGGTGAAGTATGTAGCAAATACATCAGATGT 3364
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 3542 GGAATGTAGGATGGCTTGCAGTTCTTCAAAGGTGAAGTACGTAGCAAATACATCAGATCT 3601
Query 3365 TTTGTATAGGAGCAAACAGGGGAAACCGAATTTAAGAGTCGGTGAAATCTTGAAACAGAG 3424
|||||| || |||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 3602 TTTGTACAGAAGCAAACAGGGGAAACCGAATTCAAGAGTTAGTGAAATCTTGAAACAGAG 3661
Query 3425 AAGGATATCGCGGTTTCACATAATGCTGAATTGCAGACTTTGTGCCTTGCCTCCTCTATA 3484
||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 3662 AAGAATATCGCGGTTTCACATAATGCTGAATTGCAGACTTTGTGCCTTGCCTC-T--ATA 3718
Query 3485 AACTGGTGTTAGTGTCGAGGTTCTTAATGGTAAAGGCTCGTTGGCTCTTAGAGATTATGC 3544
||||||||||||||| ||||| ||||||||||||| ||| |||||||||| |||||||||
Sbjct 3719 AACTGGTGTTAGTGTGGAGGTCCTTAATGGTAAAGACTCTTTGGCTCTTAAAGATTATGC 3778
Query 3545 AAA-----------AGAA--GT--TTA-CTCGTTTTTAACGTGACATGGACTGGGATCAT 3588
||| |||| | ||| || |||||||| ||||||||||||||||||||
Sbjct 3779 AAACTTTTGGTGGTAGAAAAGAAGTTAACTTGTTTTTAAAGTGACATGGACTGGGATCAT 3838
Query 3589 ATGGCTCATGGTTAACTACGCGGCTACTCCACAttttttgtttgtttttcttttttgcgt 3648
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 3839 ATGGCTCATGATTCACTACGCGGCTACTCCACATTTTTTGTTTGTTTTTCTTTTTT-CTT 3897
Query 3649 tttgCGTTCGGAGTCTTCGGTTTTGGTATATAGTTGTAGACTTGTAGTAGAATATATGAT 3708
|||||||| |||| | || |||||||| |||||||||| || || | | ||| ||||
Sbjct 3898 TTTGCGTTTGGAGCCGTCAGTTTTGGTGTATAGTTGTA---TT--AG-A-A-TATGTGAT 3949
Query 3709 ACGAAAGTTGCCAAAATCGAAAGACT 3734
||||||||||||||||||||||||||
Sbjct 3950 ACGAAAGTTGCCAAAATCGAAAGACT 3975
> AT1G59890.2 | Symbols: SNL5 | SIN3-like 5 | chr1:22043829-22051086
FORWARD LENGTH=4199
Length=4199
Score = 1496 bits (810), Expect = 0.0
Identities = 1957/2494 (78%), Gaps = 146/2494 (6%)
Strand=Plus/Plus
Query 981 ATAAATGAGCTTGATCTTTCTGA--GTGCACTCAGTGTACCCCAAGTTATCGACTCCTGC 1038
|||||||| || |||||| |||| ||||| || ||||| ||||||||||| | | |||
Sbjct 1302 ATAAATGAACTGGATCTTACTGACTGTGCA--CAATGTACACCAAGTTATCGTCGCTTGC 1359
Query 1039 CAAAGGATTATGC-AGTTGAGATCCCAAGCTACAGAAATACACTTGGTAAAAAGACACTC 1097
|| | |||||| | | || |||| ||||||||||||||| |||||||| ||||| ||
Sbjct 1360 CAGATGATTATCCTA-TTCAGATTCCAAGCTACAGAAATTCACTTGGTGAAAAGGTGCTT 1418
Query 1098 AATGACCACCT-GGTATCTGTCACCTCAGGGAGTGAAGATTACTCATTCAGTCATATGCG 1156
|| || || | |||||||||||| || |||||||| ||||||||||||| || |||||
Sbjct 1419 AACGATCA-TTGGGTATCTGTCACATCGGGGAGTGAGGATTACTCATTCAAACACATGCG 1477
Query 1157 CAAAAACCAGTATGAAGAAAGCTTGTTTCGGTGTGAGGATGACAGGTATGAAATGGACAT 1216
|||||| ||||||||||||||||||||||| ||||||||||| |||| ||| |||||||
Sbjct 1478 CAAAAATCAGTATGAAGAAAGCTTGTTTCGATGTGAGGATGATAGGTTTGAGTTGGACAT 1537
Query 1217 GTTACTAGGA-TCTGTAAGTTCAGCCATTAAACACGTGGAAATTCTTCTCGAGAAGATGA 1275
||||||| || ||||||||| ||||||| || | ||||||| |||||| || ||||| |
Sbjct 1538 GTTACTA-GAGTCTGTAAGTGCAGCCATCAAGCGTGTGGAAAGTCTTCTGGAAAAGATTA 1596
Query 1276 ACAACAATACTATCTC-AGTAGACTCTA-CTATATGTA-TCGAAAAACACTTATCAGCTA 1332
|||||||||| ||||| | |||| | | | || |||| | | | ||||||||||||
Sbjct 1597 ACAACAATACAATCTCTA-TAGAGAC-ACCAATTTGTATTAG-AGAACACTTATCAGAGC 1653
Query 1333 TAAACTTGAGATGCATTGAGCGGTTATACGGTGATAATGGGCTTGATGTCATGGATCTTT 1392
| ||| | ||||||||||||||||| ||||| ||| |||||||||||||||||||| |||
Sbjct 1654 TGAACCTAAGATGCATTGAGCGGTTGTACGGGGATTATGGGCTTGATGTCATGGAT-TTT 1712
Query 1393 -TGAAGAAGAA-TATGCATAGCGCTTTACCGGTGATACTAACGCGCTTGAAGCAGAAGCA 1450
|||||||||| | | |||| ||| ||||| ||||| ||||| |||||||||||||| ||
Sbjct 1713 CTGAAGAAGAATTCT-CATATCGCCTTACCTGTGATTCTAACACGCTTGAAGCAGAAACA 1771
Query 1451 AGAAGAATGGGCAAGGTGCCACTCTGATTTCCA-GAAAGTTTGGGCTGAAGTATATGCTA 1509
|||||||||||| ||||| | | ||||||| || |||||| |||||||||||||||||||
Sbjct 1772 AGAAGAATGGGCTAGGTGTCGCGCTGATTT-CAGGAAAGTATGGGCTGAAGTATATGCTA 1830
Query 1510 AGAATCACCATAAGTCACTAGATCATCGTAGTTTCTATTTCAAGCAGCAGGACTCTAAGA 1569
||||||| || || ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1831 AGAATCATCACAAATCACTCGATCATCGTAGTTTCTATTTCAAGCAGCAGGACTCCAAGA 1890
Query 1570 ACTTGAGCACAAAATGTTTAGTGGCAGA-AGTAAAAGATATCAGTGAGAAAAAGCATCAA 1628
| || ||||||||| |||||||||| || | |||| ||||||||||||| ||||||| ||
Sbjct 1891 ATTTAAGCACAAAAGGTTTAGTGGCGGAGATTAAA-GATATCAGTGAGAGAAAGCATAAA 1949
Query 1629 GAAGATCTGCTTCAAGCTATTTCTGTTAGAGTTATGCCCTCATTT-ACTCCGGATTTGGA 1687
||||| ||||||| || ||| ||||| || || |||||| ||| || || ||| ||||
Sbjct 1950 GAAGACCTGCTTCGTGCCATTGCTGTTGGAACTAAGCCCTC-TTTCACCCCAGATGTGGA 2008
Query 1688 GTTCAACTATTGTGATATACAAA-TTCACGAG-GATCTCTATCTGCTAATCAAGTATTAC 1745
||||| ||| ||||| | ||| |||| | || || ||| |||||||||||||||
Sbjct 2009 GTTCATTTATACTGATACA-AAAGTTCAT-ACTGACCTATATAAGCTAATCAAGTATTAT 2066
Query 1746 TGTGAAGAAATATGTGCCACTGAACAATCAGATAAGGTGATGAAGCTGTGGATAACCTTT 1805
||||| ||||||||||| |||||||| || ||||| || |||||||| ||| ||||||||
Sbjct 2067 TGTGAGGAAATATGTGCTACTGAACAGTCGGATAAAGTAATGAAGCTATGGGTAACCTTT 2126
Query 1806 TTAGAGCCCATGTTTGGCATTCTTTCGAGGTCTCAAGGTAACCATG-CTCTGGAAGATGT 1864
|| ||||||||||||||| ||| ||| |||||| || || | | | || |||||||
Sbjct 2127 TTGGAGCCCATGTTTGGCGTTCCTTCTAGGTCTGAAACTATTGA-GACAATGAAAGATGT 2185
Query 1865 -GTCAAAGTT-GAAAAACAACCAAGAATTGCAAGATGCATGCGTGGCAGTGAAGGACA-- 1920
| ||||| | ||| | ||||||||| || |||||| | | |||||||||||| |
Sbjct 2186 TG-CAAAGATCGAAGA-CAACCAAGAGCACCATGATGCAAGTGAGGCAGTGAAGGAAAAT 2243
Query 1921 -CA-G---C--TTCTG-GG--TCAAACCTTAAACA-TCCAATATCC-CCGAAACTAC-TG 1967
|| | | |||| || ||||||||||||| | || | || || ||| | | |
Sbjct 2244 ACATGTGACGGTTCTATGGCCTCAAACCTTAAACCGTT-AACA-CCTCCAAAAATGCCT- 2300
Query 1968 AACAAAGATAATTCAACAATGCAAGGAAGTTCTCCT-CGGAAAGATGT-CTCAG-CGAAT 2024
|||||||| || ||| || |||||||| ||| | || || ||| | | ||| | ||
Sbjct 2301 AACAAAGAAAACCCAATGATACAAGGAAGCTCTTTTGCGCAA-GATTTGC-CAGTC-AAC 2357
Query 2025 ATAATGA-AAACTGC-T-CAGCCCGATAAGCTGCAGGATGATGCAGCTATGACTAATGAG 2081
| | || ||| || | |||| ||||| ||||| |||| ||||||||| |||||||||
Sbjct 2358 ACAG-GAGAAA--GCATTCAGCAAGATAAACTGCATGATGTTGCAGCTATAACTAATGAG 2414
Query 2082 GTTATTCAGTCTTCCAAACTTGTGTCACCCAGAAATGATCAGATAATGGAGGATGAAGGG 2141
| || ||| |||||||||| |||||| ||||||| ||| ||||||||||| || || |
Sbjct 2415 GATAGCCAGCCTTCCAAACTGGTGTCAACCAGAAACGATTTGATAATGGAGGGTGTAGAG 2474
Query 2142 AATCATA-T-GGTTAAC-GAAGCATCGGTGGAAAAGCATGAGGTTGAGCGAGAAGAGGGT 2198
|||| || | || | | || | ||| ||| | |||| |||| |||||||||||||||
Sbjct 2475 AATCGTAGTAGGGTCAGTGATGTATCAATGGGAGGGCATAAGGTCGAGCGAGAAGAGGGT 2534
Query 2199 GAATTATCTCCCACCCCCAGTCGTGAGCAAGGCAACTTT-GAGGTTAATGGACAGAATGG 2257
|||||||| ||||| ||| | ||||||| || ||| |||||| || | |||||||
Sbjct 2535 GAATTATCCCCCACTGAAAGTTGCGAGCAAGAAAA-TTTCGAGGTTTATAAAGAGAATGG 2593
Query 2258 -CTTCAAGCCTTTACA-AAAGGTGACG-GACAATGTAAGAAGCAATAAAGACC-AG--C- 2310
|| | ||||| | || ||| | || || |||| || ||| |||| ||||| || |
Sbjct 2594 GCT-CGAGCCTGTGCAGAAAC-T-ACCAGATAATGAAATAAGTAATACAGACCGAGAACC 2650
Query 2311 -AAAG----T---TGTGATA-TAAAGG-G-AGCAAAGAACGATACTCGCGGTGAAGATGA 2359
|||| | |||| || | ||| | | ||| || | || | | | |||||||||
Sbjct 2651 CAAAGAGGGTGCATGTGGTACTGAAGCTGTAACAAGGAGCAATGCCCTCCCTGAAGATGA 2710
Query 2360 CAAACAAGAAAATTG-TCACAAGTTATCAGA-GGATAATGAGACTGCCTCTGAAATGC-T 2416
| || ||||| ||| ||||||||||| || | ||| | |||||| ||||| |
Sbjct 2711 TGAT-AATAAAATAACTCAAAAGTTATCAGAAGGGGA-TGAAAATGCCTC-GAAATTTAT 2767
Query 2417 TGTTTCAGGAACCAAGTTTAGTTGTCATGAAGAGCACAACAGAGTTACGAACTGTAATGG 2476
||| |||| || ||||||| || | || | | | | || | | || | ||| ||
Sbjct 2768 TGTCTCAGCAAGCAAGTTTGGTGGCCA--A-GTTT-CTTCCGA-TGAAGAGCA-TAAAGG 2821
Query 2477 -GC-GTG-GT-AG--TGTTGCTGGAGAGATGGCTAGTGGAAATGAAGGTGAAGATGGATC 2530
|| | | || | || ||||||| ||||| || | || || ||||||||||||||
Sbjct 2822 AGCTGAGAGTGAAAATGAGGCTGGAGGGATGGTTAATTCCAACGAGGGTGAAGATGGATC 2881
Query 2531 CTTTG-CA--TTTTCAGAACGGTTTCTGCAAACTGTAAAACCTGTTGCCAAGCATCTGTC 2587
|||| || ||||||||||||| ||||||| ||||||| || |||| |||||| || |
Sbjct 2882 CTTTTTCACATTTTCAGAACGGTATCTGCAACCTGTAAAGCCCCTTGCAAAGCATGTGCC 2941
Query 2588 TTGGCCATTGCAAGCTAGTGAAA-CTTGCTCCCAAAATGATTCTCAAGTTTTTTACGGGA 2646
| || || ||||||| |||||| | | ||| |||||||||| |||||| || ||||
Sbjct 2942 TGGGACACTGCAAGCAAGTGAATGCGA-CACCCGGAATGATTCTCGAGTTTTCTATGGGA 3000
Query 2647 ATGATTC-CTATTATGTGCTATTTAGGCTTCATCAAATGTTGTACGAGAGAATACAAACA 2705
||||||| || | ||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 3001 ATGATTCACTCT-ATGTGCTTTTTAGGCTTCATCAAATGTTGTACGAGAGAATACAATCA 3059
Query 2706 GCAAAGAAACATTCAGAAAAGAAGTGGAAGGCTCCAGATAACACAACTCCTGATTCTTAT 2765
||||||| ||||||||| | ||| ||||| |||||||||| |||| || |||||||||||
Sbjct 3060 GCAAAGATACATTCAGAGAGGAAATGGAAAGCTCCAGATAGCACATCTACTGATTCTTAT 3119
Query 2766 CCCAGGTTCATGGATGCACTCTATAATTTACTTGACGGTTCTATTGACAATACAAAGTTT 2825
||||||||||||| || || || ||||||||||| || |||| |||||||||||||||
Sbjct 3120 ACCAGGTTCATGGAAGCCCTTTACAATTTACTTGATGGCTCTAGCGACAATACAAAGTTT 3179
Query 2826 GAAGATGAGTGCCGAGCTATTTTTGGAGCACAGTCGTATGTTCTTTTCACATTGGACAAG 2885
|||||||| || ||||||||| | |||||||| || |||||||| |||||||||||||||
Sbjct 3180 GAAGATGAATGTCGAGCTATTATCGGAGCACAATCATATGTTCTCTTCACATTGGACAAG 3239
Query 2886 CTAGTTCAGAAGTTTGTTAAGCATCTCCATGCGGTTGCATCTGATGAAACAGACACCAAG 2945
|||||||| ||||||||||||||||| || || || ||| ||||||| ||||||||||||
Sbjct 3240 CTAGTTCAAAAGTTTGTTAAGCATCTTCACGCAGTCGCAGCTGATGAGACAGACACCAAG 3299
Query 2946 CTTCTGCAACTACATGCGTATGAGAACTACAGAAAACCAGGAAAATTCTTTGATCTTGTG 3005
|||||||| ||| |||| || |||||||||||||||||||||| |||||||||| | |||
Sbjct 3300 CTTCTGCAGCTATATGCATACGAGAACTACAGAAAACCAGGAAGATTCTTTGATATAGTG 3359
Query 3006 TATCATGAGAATGCAT-GTGCCCTCCTCCATGAGGCA-AACATATACCGGATCAGA-TAT 3062
|| ||||||||||| | | ||||| |||||||| || ||||||||| |||| || |||
Sbjct 3360 TACCATGAGAATGC-TCGAGCCCTTCTCCATGAT-CAGAACATATACAGGATT-GAATAT 3416
Query 3063 TCATCAGCAGAAACACGTCTCTCGA-TTCAGCTTATGAACAGCGGGAACAATCAGCCTGA 3121
||||| || |||| |||||| || |||| |||||||||||| |||| ||||||||||
Sbjct 3417 TCATCTGCCCAAACCCGTCTCG-GAATTCAACTTATGAACAGCTGGAATGATCAGCCTGA 3475
Query 3122 AGTAATGGGTGTAGC-GATGGAGCCAGGTTTTGC-AGATTATCTACAAAA-GAAATTTCT 3178
||| | | |||| | | |||| ||||||||||| | ||||||| || || || |||||
Sbjct 3476 AGTTACAGCTGTAACAG-TGGAACCAGGTTTTGCTA-ATTATCTGCAGAATGAC-TTTCT 3532
Query 3179 GAAATCCGTCAATGATGAAGAGAATCACGGACTGTTTCTGAAAAGGAACAAGA-AGAAAT 3237
| |||| |||||||||||| | |||||| |||||||||||||||||| | ||||
Sbjct 3533 TTCGTTTGTCAGTGATGAAGAGAAACCCGGACTATTTCTGAAAAGGAACAAGGCA-AAAT 3591
Query 3238 TCA-----CCAGCTTAGATGAATCTCGGGGGATGCC-CGTTGCGATGGAAGGATTGCATA 3291
| | || | | | | ||||||| |||||| | ||| || ||||||||||| | |
Sbjct 3592 TAAGTGGTCCGGGTGA-A-GAATCTCTAGGGATGTCACGT-GCCTTGGAAGGATTGAACA 3648
Query 3292 TTATCAACGAGATGGAATGTAATATGGCTTGCAGTTCTT-CAAAGGTGAAGTATGTAGCA 3350
||||||| ||| | |||||||| || ||||||||||||| ||| ||| ||||||| | ||
Sbjct 3649 TTATCAATGAGGTTGAATGTAAGATAGCTTGCAGTTCTTTCAA-GGTCAAGTATGAACCA 3707
Query 3351 AATACATCAGATGTTTTGTATAGGAGCAAA-CAG 3383
| ||| ||||| |||| ||||| || ||| |||
Sbjct 3708 CACACAGCAGATCTTTTATATAGAAG-AAAGCAG 3740
Score = 361 bits (195), Expect = 3e-98
Identities = 371/455 (82%), Gaps = 16/455 (4%)
Strand=Plus/Plus
Query 200 AACCGTCGATGCCCTAACGTATCTCAAAGCTGTTAAGGACATTTTTCAAGACAATAAAGA 259
||| || ||||| | || ||||| |||||||| ||||| || ||||||||||| |||||
Sbjct 491 AACAGTTGATGCTTTGACATATCTTAAAGCTGTGAAGGATATGTTTCAAGACAACAAAGA 550
Query 260 GAAATATGAGTCTTTCCTT-GAGCTCATGAAGGAGTTTAAAGCTCATACAATCGACACTG 318
|||||||||| |||||||| ||| |||||||||| || |||||||| | | | ||||||
Sbjct 551 GAAATATGAGACTTTCCTTGGAG-TCATGAAGGACTTCAAAGCTCAGAGAGTTGACACTA 609
Query 319 ATGGTGTCATTGAAAGAATTAAAGTA-TTGTTCAAGGGTTATAAGGACCTACTTTTAGGT 377
|||| ||||| | |||| | |||| | ||||||||||| ||| | ||| ||||||| |||
Sbjct 610 ATGGCGTCATAGCAAGAGTAAAAG-ATTTGTTCAAGGGCTATGACGACTTACTTTTGGGT 668
Query 378 TTTAATACTTTCTTGCCCAAAGGCTATAGAATAACCCTTCTGCCGGAGGAAGAGAAGCCT 437
|||||||| ||||| || || || || | ||| ||||||| ||| ||||| ||||| |||
Sbjct 669 TTTAATACCTTCTTACCTAAGGGGTACAAAATTACCCTTCAGCCTGAGGATGAGAAACCT 728
Query 438 AAG--GTCCGGGTGGATTTCAAAG-ACGCTATCG-GTTTCGTCACCAAGATTAAGACGAG 493
||| | || ||||||||| ||| | ||||||| ||| |||| || ||||||| || |
Sbjct 729 AAGAAG-CC-AGTGGATTTCCAAGTA-GCTATCGAATTT-GTCAACAGGATTAAGGCGCG 784
Query 494 GTTCGGAGATGATGAACATGCGTATAAAAGGTTTCTAGACATCTTGAACATGTATAGAAA 553
|| |||| |||||| | ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 785 ATTTGGAGGTGATGACCGTGCATATAAAAAATTTCTAGACATCTTGAACATGTATAGAAA 844
Query 554 GGAAAGAAAGTCCATCT-CTGAGGTCTA-CGAAGAGGTTACTATGTTATTCAAGGGTCAT 611
||||| ||||||||| | |||||||| | ||||||||||| |||| ||| ||| |||
Sbjct 845 GGAAACCAAGTCCATCAAC-GAGGTCTATC-AAGAGGTTACTCTGTTGTTCCAGGACCAT 902
Query 612 GAAGATCTGCTCATGGAGTTCGTTAATTTCTTACC 646
|||||||||||| |||||| ||| ||||||||||
Sbjct 903 GAAGATCTGCTCGGGGAGTTTGTTCATTTCTTACC 937
> AT1G10250.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SIN3-like 6 (TAIR:AT1G10450.1); Has 310 Blast hits
to 310 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa
- 174; Fungi - 23; Plants - 97; Viruses - 0; Other Eukaryotes
- 16 (source: NCBI BLink). | chr1:3360087-3360508 REVERSE
LENGTH=330
Length=330
Score = 444 bits (240), Expect = 3e-123
Identities = 273/288 (95%), Gaps = 5/288 (2%)
Strand=Plus/Plus
Query 2769 AGGTTCATGGATGCACTCTATAATTTACTTGACGGTTCTATT---GACAATACAAAGTTT 2825
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 41 AGGTTCATGGATGCACTCTATAATTTACTTGACGGTTCTATTGACGACAATACAAAGTTT 100
Query 2826 GAAGATGAGTGCCGAGCTATTTTTGGAGCACAGTCGTATGTTCTTTTCACATTGGACAAG 2885
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 101 GAAGATGAGTGCCGAGCTATTTTTGGAGCACAGTCATATGTTCTTTTCACATTGGACAAG 160
Query 2886 CTAGTTCAGAAGTTTGTTAAGCATCTCCATGCGGTTGCATCTGATGAAACAGACACCAAG 2945
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 161 CTAGTTCAGAAGTTTGTTAAGCATCTCCATGCAGTTGCATCTGATGAAACAGACACCAAG 220
Query 2946 CTTCTGCAACTACATGCGTATGAGAACTACAGAAAACCA-GGAAA-ATTCTTTGATCTTG 3003
||||||||||||||||||||||||||||||||||||| || || || |||||||| |
Sbjct 221 CTTCTGCAACTACATGCGTATGAGAACTACAGAAAACTTTGGGAAGATGATTTGATCTAG 280
Query 3004 TGTATCATGAGAATGCATGTGCCCTCCTCCATGAGGCAAACATATACC 3051
||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 281 TGTATCATGAGAATGCATGTGCCATCCTCCATGAGGCAAAGATATACC 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 185968857701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5