BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471161
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10480.1 | Symbols: ZFP5 | zinc finger protein 5 | chr1:3449... 1110 0.0
> AT1G10480.1 | Symbols: ZFP5 | zinc finger protein 5 | chr1:3449691-3451226
FORWARD LENGTH=1536
Length=1536
Score = 1110 bits (601), Expect = 0.0
Identities = 732/794 (92%), Gaps = 13/794 (2%)
Strand=Plus/Plus
Query 25 CACACATATATGTCTATATCTCCGACAATGTCTCGTACAGGTGAAAGTTCATCAGGCTCA 84
|||||||||||||||||| |||||||||||||||||| || |||||||| ||||| ||
Sbjct 35 CACACATATATGTCTATAAATCCGACAATGTCTCGTACTGGCGAAAGTTCTTCAGGTTCG 94
Query 85 TCCTCCGACAAGACGATAAAGCTATTCGGCTTCGACCTGATCAGCGGCAATCGCT-CGCC 143
||||||||||||||||||||||||||||||||||| || |||||||||| ||| | ||||
Sbjct 95 TCCTCCGACAAGACGATAAAGCTATTCGGCTTCGAACTCATCAGCGGCAGTCG-TACGCC 153
Query 144 GGAAATCACGACGGCGGAAAGCGTGAGCTCGTCCACAAACACGACGTCGTTAACAGTGAT 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 GGAAATCACGACGGCGGAAAGCGTGAGCTCGTCCACAAACACGACGTCGTTAACAGTGAT 213
Query 204 AAAAAGACTTGACTGCCAATACTGTGGCAAAGAGTTCGCAAATTCTCAAGCCTTAGGAGG 263
||||||| || ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 214 GAAAAGACACGAGTGCCAATACTGCGGTAAAGAGTTTGCAAATTCTCAAGCCTTAGGAGG 273
Query 264 TCACCAAAACGCCCACAAGAAAGAGAGGTTGAAGAAGAAGAGGCTTCAGCTTCAAGCTAG 323
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 274 TCACCAAAACGCTCACAAGAAGGAGAGGTTGAAGAAGAAGAGGCTTCAGCTTCAAGCTCG 333
Query 324 ACGAGCCAGCATCGGCTATTATCTCACCAGCCACCAACAACCCATAACGACGTCATTTCA 383
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 334 GCGAGCCAGCATCGGCTATTATCTCACCAACCACCAACAACCCATAACGACGTCATTTCA 393
Query 384 GAGACAATACAATACCCCGTCATATTGTGCCTTCTCATCTATGCACGTGAATAATAATCA 443
|||||||||||| || ||||| |||||||| ||||| || ||||||||||||||| ||||
Sbjct 394 GAGACAATACAAAACGCCGTCGTATTGTGCATTCTCCTCCATGCACGTGAATAATGATCA 453
Query 444 GATGGGTGTGTACAACGAGGAGTGGTCGTCGAGGTCGTCGCAGATTAGCTTCGGTAATAA 503
|||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct 454 GATGGGTGTGTACAACGAAGATTGGTCGTCGAGGTCGTCGCAGATTAACTTCGGTAATAA 513
Query 504 GGACACGTGCCAAGATCTTAATGAACAAAGTGGTGAGATGGGTAAGCTGTACGGTGTACG 563
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 514 TGACACGTGCCAAGATCTTAATGAACAAAGCGGTGAGATGGGTAAGCTGTACGGTGTTCG 573
Query 564 ACCGAACATGATTCAGTTCCAGAGAGATCTGACTTCTCGTTCTGATCAGATGAGAAGAAT 623
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 574 ACCGAACATGATTCAGTTCCAGAGAGATCTGAGTTCTCGTTCTGATCAGATGAGAAGTAT 633
Query 624 CAAGTCGCTGGATCTTCATCTAGGTTTTGCCGGAGATTCGGCTTAACAAAGC---GAGAG 680
|| ||||||||||||||||||||||||||||||||| |||| ||||||| |||||
Sbjct 634 TAACTCGCTGGATCTTCATCTAGGTTTTGCCGGAGATGCGGCATAACAAATTAAAGAGAG 693
Query 681 ATATATGATTAAGATTATATGTACTAATTAATGGTGTATTTTATTGGGATCAGGAAGGa- 739
|||||||||||||||||||||||||| | | ||| |||||| |||||||||| |||||
Sbjct 694 ATATATGATTAAGATTATATGTACTA-T-AGTGGCGTATTTCATTGGGATCATGAAGGGG 751
Query 740 aaaaaaCGAGACATA--GTATTCTTGATGCAATTTGAGTTTT--A-TTTATTTAGGTTTA 794
||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 752 AAAAAACGAGACATATAGTATTCTTGATGCAATTTGAGTTTTGTAATTTATTTAGGTTTA 811
Query 795 TGTATGTTTTTGAA 808
|||||||||| |||
Sbjct 812 TGTATGTTTTCGAA 825
Score = 113 bits (61), Expect = 3e-24
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 1092 GTGCTATTCGTACACGCCTCAATTTGATTTATAGTCAAATTTCAAATAtttttttAGAAA 1151
|||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 1294 GTGCAATTCGTACACGCCTCAATTTGATTTATAGTCAAATTTCAAAAAATTTGTTAGAAA 1353
Query 1152 TTTCATCTCTAAAGTT 1167
||||||||| ||||||
Sbjct 1354 TTTCATCTCAAAAGTT 1369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60039851820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5