BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471161 Length=1222 Score E Sequences producing significant alignments: (Bits) Value AT1G10480.1 | Symbols: ZFP5 | zinc finger protein 5 | chr1:3449... 1110 0.0 > AT1G10480.1 | Symbols: ZFP5 | zinc finger protein 5 | chr1:3449691-3451226 FORWARD LENGTH=1536 Length=1536 Score = 1110 bits (601), Expect = 0.0 Identities = 732/794 (92%), Gaps = 13/794 (2%) Strand=Plus/Plus Query 25 CACACATATATGTCTATATCTCCGACAATGTCTCGTACAGGTGAAAGTTCATCAGGCTCA 84 |||||||||||||||||| |||||||||||||||||| || |||||||| ||||| || Sbjct 35 CACACATATATGTCTATAAATCCGACAATGTCTCGTACTGGCGAAAGTTCTTCAGGTTCG 94 Query 85 TCCTCCGACAAGACGATAAAGCTATTCGGCTTCGACCTGATCAGCGGCAATCGCT-CGCC 143 ||||||||||||||||||||||||||||||||||| || |||||||||| ||| | |||| Sbjct 95 TCCTCCGACAAGACGATAAAGCTATTCGGCTTCGAACTCATCAGCGGCAGTCG-TACGCC 153 Query 144 GGAAATCACGACGGCGGAAAGCGTGAGCTCGTCCACAAACACGACGTCGTTAACAGTGAT 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 GGAAATCACGACGGCGGAAAGCGTGAGCTCGTCCACAAACACGACGTCGTTAACAGTGAT 213 Query 204 AAAAAGACTTGACTGCCAATACTGTGGCAAAGAGTTCGCAAATTCTCAAGCCTTAGGAGG 263 ||||||| || ||||||||||| || |||||||| ||||||||||||||||||||||| Sbjct 214 GAAAAGACACGAGTGCCAATACTGCGGTAAAGAGTTTGCAAATTCTCAAGCCTTAGGAGG 273 Query 264 TCACCAAAACGCCCACAAGAAAGAGAGGTTGAAGAAGAAGAGGCTTCAGCTTCAAGCTAG 323 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 274 TCACCAAAACGCTCACAAGAAGGAGAGGTTGAAGAAGAAGAGGCTTCAGCTTCAAGCTCG 333 Query 324 ACGAGCCAGCATCGGCTATTATCTCACCAGCCACCAACAACCCATAACGACGTCATTTCA 383 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 334 GCGAGCCAGCATCGGCTATTATCTCACCAACCACCAACAACCCATAACGACGTCATTTCA 393 Query 384 GAGACAATACAATACCCCGTCATATTGTGCCTTCTCATCTATGCACGTGAATAATAATCA 443 |||||||||||| || ||||| |||||||| ||||| || ||||||||||||||| |||| Sbjct 394 GAGACAATACAAAACGCCGTCGTATTGTGCATTCTCCTCCATGCACGTGAATAATGATCA 453 Query 444 GATGGGTGTGTACAACGAGGAGTGGTCGTCGAGGTCGTCGCAGATTAGCTTCGGTAATAA 503 |||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| Sbjct 454 GATGGGTGTGTACAACGAAGATTGGTCGTCGAGGTCGTCGCAGATTAACTTCGGTAATAA 513 Query 504 GGACACGTGCCAAGATCTTAATGAACAAAGTGGTGAGATGGGTAAGCTGTACGGTGTACG 563 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 514 TGACACGTGCCAAGATCTTAATGAACAAAGCGGTGAGATGGGTAAGCTGTACGGTGTTCG 573 Query 564 ACCGAACATGATTCAGTTCCAGAGAGATCTGACTTCTCGTTCTGATCAGATGAGAAGAAT 623 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 574 ACCGAACATGATTCAGTTCCAGAGAGATCTGAGTTCTCGTTCTGATCAGATGAGAAGTAT 633 Query 624 CAAGTCGCTGGATCTTCATCTAGGTTTTGCCGGAGATTCGGCTTAACAAAGC---GAGAG 680 || ||||||||||||||||||||||||||||||||| |||| ||||||| ||||| Sbjct 634 TAACTCGCTGGATCTTCATCTAGGTTTTGCCGGAGATGCGGCATAACAAATTAAAGAGAG 693 Query 681 ATATATGATTAAGATTATATGTACTAATTAATGGTGTATTTTATTGGGATCAGGAAGGa- 739 |||||||||||||||||||||||||| | | ||| |||||| |||||||||| ||||| Sbjct 694 ATATATGATTAAGATTATATGTACTA-T-AGTGGCGTATTTCATTGGGATCATGAAGGGG 751 Query 740 aaaaaaCGAGACATA--GTATTCTTGATGCAATTTGAGTTTT--A-TTTATTTAGGTTTA 794 ||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| Sbjct 752 AAAAAACGAGACATATAGTATTCTTGATGCAATTTGAGTTTTGTAATTTATTTAGGTTTA 811 Query 795 TGTATGTTTTTGAA 808 |||||||||| ||| Sbjct 812 TGTATGTTTTCGAA 825 Score = 113 bits (61), Expect = 3e-24 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 1092 GTGCTATTCGTACACGCCTCAATTTGATTTATAGTCAAATTTCAAATAtttttttAGAAA 1151 |||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| Sbjct 1294 GTGCAATTCGTACACGCCTCAATTTGATTTATAGTCAAATTTCAAAAAATTTGTTAGAAA 1353 Query 1152 TTTCATCTCTAAAGTT 1167 ||||||||| |||||| Sbjct 1354 TTTCATCTCAAAAGTT 1369 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60039851820 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5