BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471163
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10500.1 | Symbols: ATCPISCA, CPISCA | chloroplast-localized... 1125 0.0
AT1G10490.1 | Symbols: | Domain of unknown function (DUF1726) ... 440 9e-123
> AT1G10500.1 | Symbols: ATCPISCA, CPISCA | chloroplast-localized
ISCA-like protein | chr1:3460000-3461485 REVERSE LENGTH=848
Length=848
Score = 1125 bits (609), Expect = 0.0
Identities = 776/852 (91%), Gaps = 29/852 (3%)
Strand=Plus/Plus
Query 1 ACCTACCTGAAAACAAAAAACATGTGGACTT-AAAAATTGTTGTGCGAAAAGATTTG-TT 58
||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||| ||
Sbjct 1 ACCTACCTGAAAACAAATAACATGTGGACTTAAAAAATTGTTATGCAAAAAGATTTGTTT 60
Query 59 TCTTC-TTGGTCTTCTTCTACTACACGCA-TT---T-----GAGAG----ATTCCTCAGC 104
| ||| ||||||||||||||||||||||| || | ||||| ||||||||||
Sbjct 61 TTTTCATTGGTCTTCTTCTACTACACGCATTTGAATCAGCAGAGAGATTAATTCCTCAGC 120
Query 105 TTGGCGATTCAATTCTCAGAAGATGATGGCTTTCG---CTGGAATCACGACGACTTCAAA 161
| |||||||||||||||||||||| |||||||||| |||||||||||||| |||||||
Sbjct 121 TCGGCGATTCAATTCTCAGAAGATTATGGCTTTCGCTACTGGAATCACGACGTCTTCAAA 180
Query 162 TCCAACTTTTCTTGGGCTAAGGATCTCTAACACAAGTTTACCTTCTGTGGTTCCATGTAA 221
||||||||||||||| |||| |||||| ||||||||| ||| |||||||||| |||||||
Sbjct 181 TCCAACTTTTCTTGGTCTAAAGATCTCCAACACAAGTCTACGTTCTGTGGTTTCATGTAA 240
Query 222 TTCGATTTCGTTTCCTTCTTTGTCATATGTGAATCTCAATCTCAATCTCAATCGGAGAAA 281
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 241 TTCGATTTCGTTTCCTTCTTTGTCATATGTGAATCTCAA---C---CTCAATCGGAGAAA 294
Query 282 CCTCCTCTGTGTTCGATCCACTTCAGTTCCAGCTGCACCTGCAATGGAAGGACTGAAGCC 341
|| ||| | |||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 295 CCGCCTTTCTGTTCGATCCGCTTCGGTTCCAGCTGCACCTGCAATGGAGGGACTGAAGCC 354
Query 342 GGCGATTTCTCTGTCAGAGAATGCACTTAAGCATCTGAGTAAGATGAGATCAGAACGTGG 401
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGCGATATCTCTGTCAGAAAATGCACTTAAGCATCTGAGTAAGATGAGATCAGAACGTGG 414
Query 402 GGAAGATTTGTGCTTGCGAATTGGTGTCAAACAAGGAGGATGCTCTGGG-ATGTCTTACA 460
|||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||||
Sbjct 415 GGAAGATTTGTGCTTGAGAATTGGAGTCAAACAAGGAGGATGCTC-GGGTATGTCCTACA 473
Query 461 CTATGGACTTTGAGAACAGAGCAAATGCAAGACCAGATGATTCCACCATCGAATACCAAG 520
| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 474 CGATGGACTTTGAAAACAGAGCAAATGCAAGACCAGATGATTCCACTATCGAATACCAGG 533
Query 521 GATTCACTATAGTTTGTGATCCAAAGAGCATGCTCTTTCTTTTCGGAATGCAGCTTGATT 580
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 534 GATTCACTATAGTTTGTGATCCAAAGAGCATGCTCTTTCTTTTTGGAATGCAGCTTGATT 593
Query 581 ACAGTGATGCTTTAATTGGTGGAGGCTTCTCTTTCTCCAACCCTAACGCTACACAAACCT 640
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 594 ACAGCGATGCTTTGATTGGTGGAGGCTTCTCTTTCTCGAACCCTAACGCTACACAAACCT 653
Query 641 GTGGATGTGGGAAGTCTTTTGCTGCCGAGATGTGAACCAGTTTGACATATTGCAGTAAAT 700
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||
Sbjct 654 GTGGATGTGGGAAGTCTTTTGCTGCCGAGATGTGAACCAGTTTCACACATTGCAGTAGAT 713
Query 701 AAATAATATAGTTATAGTTAATAGAAAACTTTGTATTATGGTTGTAGAATGCCCAAACAG 760
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 714 AAACAATATAGTTATAGTTAATAGAAAACTTTGTATTATGGTTGTAGAATGCTCAAACAG 773
Query 761 AATATGCAAGttttttttttttCACTTGTGATGAACAAACCAAAATTTTAATAAATTATT 820
||| || |||||||||| | |||| |||| ||||||| |||||||||||||||||
Sbjct 774 AATCTGTAAGTTTTTTTAAAAAAA-TTGT-ATGATCAAACCATAATTTTAATAAATTATT 831
Query 821 CAACCTGGTTAC 832
||||||||||||
Sbjct 832 CAACCTGGTTAC 843
> AT1G10490.1 | Symbols: | Domain of unknown function (DUF1726)
;Putative ATPase (DUF699) | chr1:3453228-3460620 FORWARD LENGTH=3843
Length=3843
Score = 440 bits (238), Expect = 9e-123
Identities = 281/302 (93%), Gaps = 2/302 (1%)
Strand=Plus/Minus
Query 531 AGTTTGTGATCCAAAGAGCATGCTCTTTCTTTTCGGAATGCAGCTTGATTACAGTGATGC 590
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 3527 AGTTTGTGATCCAAAGAGCATGCTCTTTCTTTTTGGAATGCAGCTTGATTACAGCGATGC 3468
Query 591 TTTAATTGGTGGAGGCTTCTCTTTCTCCAACCCTAACGCTACACAAACCTGTGGATGTGG 650
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3467 TTTGATTGGTGGAGGCTTCTCTTTCTCGAACCCTAACGCTACACAAACCTGTGGATGTGG 3408
Query 651 GAAGTCTTTTGCTGCCGAGATGTGAACCAGTTTGACATATTGCAGTAAATAAATAATATA 710
||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||
Sbjct 3407 GAAGTCTTTTGCTGCCGAGATGTGAACCAGTTTCACACATTGCAGTAGATAAACAATATA 3348
Query 711 GTTATAGTTAATAGAAAACTTTGTATTATGGTTGTAGAATGCCCAAACAGAATATGCAAG 770
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct 3347 GTTATAGTTAATAGAAAACTTTGTATTATGGTTGTAGAATGCTCAAACAGAATCTGTAAG 3288
Query 771 ttttttttttttCACTTGTGATGAACAAACCAAAATTTTAATAAATTATTCAACCTGGTT 830
||||||| | |||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct 3287 TTTTTTTAAAAAAA-TTGT-ATGATCAAACCATAATTTTAATAAATTATTCAACCTGGTT 3230
Query 831 AC 832
||
Sbjct 3229 AC 3228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40538956629
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5