BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471164
Length=2140
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10510.1 | Symbols: emb2004 | RNI-like superfamily protein |... 3319 0.0
> AT1G10510.1 | Symbols: emb2004 | RNI-like superfamily protein
| chr1:3461635-3465786 FORWARD LENGTH=2150
Length=2150
Score = 3319 bits (1797), Expect = 0.0
Identities = 2037/2151 (95%), Gaps = 24/2151 (1%)
Strand=Plus/Plus
Query 1 CTTCATCTTCATCATCGCCTCTTCTCTTCTCCTCCAATTCGTCGC-TTTAGTATCTTCCA 59
||||||||||||||||| |||||||||||| |||||||||||| | |||||| |||| ||
Sbjct 1 CTTCATCTTCATCATCGTCTCTTCTCTTCTACTCCAATTCGTCTCTTTTAGTCTCTTACA 60
Query 60 CTTTCTTCATTCTCCAGTGGTTGGTTTACATACAGCGAGAATTTCACGCGTCTATGCATA 119
||||| | ||||| ||||||||||||| || ||||||||| ||||| |||||||||| ||
Sbjct 61 CTTTCCTAATTCTTCAGTGGTTGGTTTTCACACAGCGAGAGTTTCAAGCGTCTATGCGTA 120
Query 120 ATCAAGCAGCTCTTTAATGGCGTCTTCTTCCACCAGCTCCCTCAATCTCCACTCTCTCCC 179
|| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTAAGCAGCTCCTTAATGGCTTCTTCTTCCACCAGCTCCCTCAATCTCCACTCTCTCCC 180
Query 180 CAAGGCTTCTTCTGGGTTGAGCCAATGGAGGAGTGGGTTCCGGTACGAATTGTTGGGTAG 239
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CAAGGCTTCTTCTGGGTTGGGCCAATGGAAGAGTGGGTTCCGGTACGAATTGTTGGGTAG 240
Query 240 CTCCGTTTCTAGAAACCGATTGTTGGTTTCTCCGGTGGTGATTCTTCACCGAAGTCCGAG 299
|||||||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||
Sbjct 241 CTCCGTTTCTAGGAACCGATTGTTTGTTTCTCCTGTGGTGATTCATCACCGAAGTCCGAG 300
Query 300 ACTTCCGGCGATCAAAGCTGCGTATAACTCAGATGGAGGCTCGAAGCGTAGTAGGGTTTA 359
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTTCCGGCGATCAAAGCGGCGTATAACTCAGATGGAGGCTCGAAGCGTAGTAGGGTTTA 360
Query 360 TAAGGAGTCACAGGCGGCTAGTGGTTTTCCTAATGCTAAAGTGCAGCAGATTGCGTCTTC 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TAAGGAGTCACAAGCGGCTAGTGGTTTTCCTAATGCTAAAGTGCAGCAGATTGCGTCTTC 420
Query 420 AGTCTTGCCTTTAGGCTCATTTGCTGTCGTCACTTTCGTTTTGTGGAAAGTGGTTGAGAA 479
|||||||| || || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 CGTCTTGCCCTTGGGATCATTTGCTGTCGTCACTTTCGTTTTGTGGAAAGTGGTTGGGAA 480
Query 480 GTTCATGTCGCCAAAGTCTCCAAAGACTGT-TGCTGGAGAAAACAAATCTTCTACACAGG 538
|||||||||||| ||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 481 GTTCATGTCGCCTAAGTCTCCAAAGACT-TCTGCTGGAGAAAACAACTCTTCTACACAGG 539
Query 539 GAGTGAAATGGTCGATTGGGGCCGGTACAAATTTGTTACAGGGATTTGCTGCTAAGGTTG 598
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 540 GAGTGAAATGGTCGATCGGGGCCGGTACTAATTTGTTACAAGGATTTGCTGCTAAGGTTG 599
Query 599 ATAGAGAGGCCAAGCAGAGGCTTAATGAATTTGCAAAAGAACTCAGGTCCTTCAGAAGTG 658
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 ATAGAGAGGCCAAGCAGAGGCTTAATGAATTTGCAAAAGAACTTAGGTCCTTCAGAAGTG 659
Query 659 TTGACATGTCAGGATGCAACTTTGGAGATGAAGGATTATTCTTTCTTGCTGAAAGCCTTG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGACATGTCAGGATGCAACTTTGGAGATGAAGGATTATTCTTTCTTGCTGAAAGCCTTG 719
Query 719 GGTATAATCAGACTGTAGAGGAAGTCAGTTTTTCTGCAAATGGAATTACAGCTGCAGGAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGTATAATCAGACTGTAGAGGAAGTCAGTTTTTCTGCAAATGGAATTACAGCTGCAGGAG 779
Query 779 TTAAAGCCTTCGACGGTGTTCTTCAATCAAATATTATGTTGAAATTTCTTAATCTCTCTG 838
|||||||||| || |||||||||||||||||||||||||| ||| |||||||||| ||||
Sbjct 780 TTAAAGCCTTTGATGGTGTTCTTCAATCAAATATTATGTTAAAAATTCTTAATCTTTCTG 839
Query 839 GAAACCCTATCGGTGATGAAGGCGCTAAGACTTTATGCGCTACACTGATGGAAAATTCTA 898
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 GAAACCCTATCGGTGATGAAGGAGCTAAGACTTTATGCGCTACACTGATGGAAAATTCTA 899
Query 899 GCATCGAGATACTTCAGCTGAACAGTACTGATATAGGAGATGAGGGTGCAAAGGAAATTG 958
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 GCATTGAGATACTTCAGCTGAACAGTACTGATATAGGAGATGAGGGTGCAAAGGAAATCG 959
Query 959 CAGAGTTGTTGAAGAGAAATTCAACCTTGAGGATTATTGAGCTGAATAATAACATGATTG 1018
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 CAGAATTGTTGAAGAGAAATTCGACCTTGAGGATTATTGAGCTGAATAATAACATGATTG 1019
Query 1019 ACTATTCTGGATTCACAAGTCTTGCTGGAGCTCTTCTTGAGAATAATACAATACGCAATT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACTATTCTGGATTCACAAGTCTTGCTGGAGCTCTTCTTGAGAATAATACAATACGCAATT 1079
Query 1079 TACATCTCAATGGAAATTACGGTGGTGCTTTGGGTGCCAATGCTTTAGCCAAAGGTCTTG 1138
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1080 TACATCTCAATGGAAATTACGGTGGTGCTTTGGGTGCCAATGCTTTAGCTAAAGGGCTTG 1139
Query 1139 AGGGTAACAAGTCTTTACGGGAACTTCATTTGCATGGAAACTCTATTGGAGACGAAGGAA 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1140 AGGGTAACAAGTCTTTACGGGAACTTCATTTGCATGGAAACTCTATTGGAGACGAAGGGA 1199
Query 1199 CGCGTGCTTTGATGGCTGGTCTATCTTCCCACAAAGGGAAACTGGCTTTGCTAGATCTCG 1258
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1200 CTCGTGCTTTGATGGCTGGTCTATCTTCCCACAAAGGGAAAGTGGCTTTGCTAGATCTCG 1259
Query 1259 GAAACAACTCCATCTCCGCAAAGGGTGCCTTCTATGTAGCAGAATACATCAAGAGAAGCA 1318
| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1260 GCAACAACTCCATTTCCGCAAAGGGTGCCTTCTATGTAGCTGAATACATCAAGAGAAGCA 1319
Query 1319 AGAGCTTGGTTTGGCTGAACCTGTACATGAATGATATAGGCGATGTGGGAGCTGAAAAGA 1378
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1320 AGAGCTTGGTTTGGCTGAACCTGTACATGAATGATATAGGTGATGAGGGAGCTGAAAAGA 1379
Query 1379 TTGCAGATGCTCTGAAGCAAAACCGTTCGATTGCAACCATTGACCTGGGTGGAAATAACA 1438
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1380 TTGCAGATTCTCTGAAGCAAAACCGTTCAATTGCAACCATTGACCTGGGTGGAAATAACA 1439
Query 1439 TCCACGCGGAGGGAGTAAATGCTATAGCTCAAGCTCTGAAAGATAATGCAATTATTACGA 1498
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TCCACGCGGAGGGAGTTAATGCTATAGCTCAAGCTCTGAAAGATAATGCAATTATTACGA 1499
Query 1499 CGTTAGAGGTTGGTTATAATCCCATAGGACCAGACGGAGCTAAAGCATTATCTGAGGTTC 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1500 CGTTAGAGGTTGGTTATAATCCCATAGGACCAGACGGAGCTAAAGCATTATCTGAAATTC 1559
Query 1559 TCAAGTTCCATGGAAATGTAAAGACGCTCAAACTTGGTTGGTGCCAGATAGCTGCTAAGG 1618
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1560 TCAAGTTCCATGGAAATGTAAAGACGCTCAAACTTGGTTGGTGTCAGATAGCTGCCAAGG 1619
Query 1619 GTGCTGAACATGTTGCAGACATGCTGAGATATAACAACACAATCTCGGTTTTGGACTTGC 1678
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1620 GTGCTGAACATGTTGCAGACATGTTGAGATATAACAATACAATCTCGGTTTTGGACTTGC 1679
Query 1679 GGGCAAATGGACTTAGAGATGAGGGAGCTTCCTGCTTAGCTCGGAGCTTGAAAGTAGTAA 1738
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1680 GGGCAAATGGACTTAGAGATGAGGGAGCTTCCTGCTTAGCTCGAAGCTTGAAAGTAGTTA 1739
Query 1739 ATGAAGCGCTGACATCTGTGGATCTAGGATTCAATGAAATACGGGATGATGGGGCTTTCG 1798
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1740 ATGAAGCTCTGACATCTGTGGATCTAGGATTCAATGAAATACGGGATGATGGAGCATTCG 1799
Query 1799 CTATTGCTCAAGC-TCTAAAGGCGAATGAAGATGTCACGGTTACATCGATAAACCTTGGG 1857
| ||||||||||| | | ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1800 CCATTGCTCAAGCAT-TGAAGGCCAATGAAGATGTCACAGTTACATCGATAAACCTTGGG 1858
Query 1858 AACAACTTCATCACCAAGTTTGGACAGAGTGCGCTCACGGATGCTAGAGACCATGTTCTT 1917
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1859 AACAACTTCATCACCAAGTTTGGACAGAGTGCGCTCACGGATGCTAGAGATCATGTTCTT 1918
Query 1918 GAGATGACTGAAAAAGAAGTAGAGATTTTCTTCTAGGAGAGACATTGAAGTGAAGAAGAC 1977
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1919 GAGATGACTGAAAAGGAAGTAGAAATTTTCTTCTAGGAGAGACATTGAAGTGAAGAAGAC 1978
Query 1978 TTCGTCACTCTGTAATTTTGCACCGTTTAGTTGTTGTCTCATTCTTTATGACGT--A--- 2032
|| ||||||||||||||||||||| || ||||||||| ||||| |||||||||| |
Sbjct 1979 TTTGTCACTCTGTAATTTTGCACCATT-AGTTGTTGTTTCATTATTTATGACGTTGAAAT 2037
Query 2033 G-TTCAAACGAGAGA-AAAATTGTTCTTTCTTTTTGGGTTTACGGT-ACGATTCAATTTT 2089
| ||||| ||||||| |||| || | | | || || ||||| | |||| ||||||
Sbjct 2038 GATTCAAGCGAGAGATAAAACA-TT-TGT-TGTTCC--TT-ACGGTGA-GATTTAATTTT 2090
Query 2090 TAATTCAATGAAAAGTTTTCATGAAAAATGGTGTTGACTAACAAATGAGAG 2140
||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 2091 -AATTCAAGGAA--GTTTTCATGAAAAATGGTGTTGACTAACAAAAGAGAG 2138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106123952130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5