BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471166 Length=954 Score E Sequences producing significant alignments: (Bits) Value AT1G10522.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1334 0.0 AT3G61198.1 | Symbols: | other RNA | chr3:22655884-22656599 RE... 320 1e-86 AT5G54075.1 | Symbols: U3D | U3D; snoRNA | chr5:21945349-219457... 318 5e-86 AT5G53902.1 | Symbols: U3B | U3B; snoRNA | chr5:21887966-218886... 315 7e-85 AT4G00975.1 | Symbols: | other RNA | chr4:421973-423258 FORWAR... 215 7e-55 AT5G53905.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 169 6e-41 AT5G54070.1 | Symbols: AT-HSFA9, HSFA9 | heat shock transcripti... 159 3e-38 AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 158 1e-37 > AT1G10522.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:3469636-3471488 FORWARD LENGTH=980 Length=980 Score = 1334 bits (722), Expect = 0.0 Identities = 888/964 (92%), Gaps = 27/964 (3%) Strand=Plus/Plus Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCC 60 Query 61 CTTAACCCTGGTTGATGAACCATGACCGTGCGATCAGAGCGTGATTAACGGCTACGATCG 120 || ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| Sbjct 61 CTAAACCCTGGTTGATGAACCATGACCGTGCGGTCAGAGCGTGATTGATGGCTACGATCG 120 Query 121 TCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGTCTTCCTTGCCGGGG 180 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 121 TCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTTGGTCTTCCTTGCCGGGG 180 Query 181 TGGTCGCACGGCGGTCTGACAGAAAACCCTCAGAGATAAGGTTGAAGAGTGAAAAAAGCA 240 |||||||||||||||||||||||||| | |||||||||||||||||||| ||||| Sbjct 181 TGGTCGCACGGCGGTCTGACAGAAAA--C-AAGAGATAAGGTTGAAGAGTG----AAGCA 233 Query 241 AA-CAGTAGTAATGGCTTCTTCTGCAATGCACGAAGCTCTTTTCTCTTCTCGGCTTCTTC 299 || | ||||||||| | | | |||||||||||||||| ||||||||||||||||||| Sbjct 234 AAGC-TTAGTAATGG---C-T-T-CAATGCACGAAGCTCTGTTCTCTTCTCGGCTTCTTC 286 Query 300 AAGCCAATTCTTCTTCGTCCTTCCGTTGCGCTCTTCCAATTATCTCTTCACCAGCTGCAG 359 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 287 AAGTCAATTCTTCTTTTTCCTTCCGTTGCGCTCTTCCAATTATCTCTTCACCAGCTGCAG 346 Query 360 TATCGTGCGCAATCAAATCGACCCAGTTTTTTAAGCAGCGTTGTAGAACCAAATTGAGAG 419 |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| | Sbjct 347 TATCTTGCGCAATCAAATCGACCCAGTTTTTTAAACAGCGTTGTAGAACCAAAGTGAGGG 406 Query 420 ACTTTTCTCTTTCTTCACAGTCCCGGAGAGGGTTTGTTTGCAGAGCTGCTGAGTACAAGT 479 |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 407 ACTTTTCTCTATCTTCACTGTCCCGGAGAGGGTTCGTTTGCAGAGCTGCTGAGTACAAGT 466 Query 480 TTCCGGATCCCATACCTGAATTCGCCGAAGCTGAGACTGAGAAGTTTAGGGACCATATGT 539 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 467 TTCCGGATCCCATACCTGAATTCGCCGAAGCTGAGACTGAGAAATTTAGGGACCATATGT 526 Query 540 TAAAGAAACTATCCAAGAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTCGGAATCT 599 |||| |||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 527 TAAACAAACTATCAAAAAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCT 586 Query 600 GCACTGAGATCTTCGGGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGG 659 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 587 GCACTGAGATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGG 646 Query 660 TCATACCCTTCATTGACATGGCAGATACTCTCAATGAAAGGGAATTGCCTGGAGGTCCAC 719 | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 647 TGATACCTTTCATTGACATGGCAGATACTCTCAACGAAAGGGAATTGCCTGGAGGTCCAC 706 Query 720 AGGCCGCACGAGCAGCTATTAAATGGGCTCAGGATCATGTAGACAAGGACTGGAAGGAAT 779 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 707 AAGCCGCCCGAGCAGCTATTAAATGGGCTCAGGATCATGTAGACAAGGACTGGAAGGAAT 766 Query 780 GGACTGGCACTGATTAGTCCT-TGA-AGCAT-AATTATAATCTGTGAGTTATTTAGTTCA 836 |||| ||||||||||||||| || ||||| || ||||||| ||||||||||||||| | Sbjct 767 GGACCGGCACTGATTAGTCCCCTGGGAGCATTAAGTATAATCCGTGAGTTATTTAGTTTA 826 Query 837 GTAGTGGTGTAGCAGATG-GTACAATATTGAT-TCAAGATTACTGTGTTGTGAAGCACTT 894 ||||||| |||||||||| || || | | | || ||||||| ||| ||||||||||| Sbjct 827 GTAGTGGGGTAGCAGATGTGT-CATTGTAAAACTCT-GATTACTATGTCGTGAAGCACTT 884 Query 895 AATA---GATCCAAAACCT-TTTGGTGTAAATTTGTCCAAACGACTGGAAACTAGAAAAA 950 ||| |||| ||||| | ||||||||||| |||||||||||||||||||| ||||||| Sbjct 885 AATCTTTGATCAAAAAC-TGTTTGGTGTAAACTTGTCCAAACGACTGGAAACAAGAAAAA 943 Query 951 GAAA 954 |||| Sbjct 944 GAAA 947 > AT3G61198.1 | Symbols: | other RNA | chr3:22655884-22656599 REVERSE LENGTH=622 Length=622 Score = 320 bits (173), Expect = 1e-86 Identities = 190/198 (96%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 6 GGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCCCTTAA 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCCCTTAA 60 Query 66 CCCTGGTTGATGAACCATGACCGTGCGATCAGAGCGTGATTAACGGCTACGATCGTCTTC 125 ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct 61 CCCTGGTTGATGAACCATGGCCGTGCGATCAGAGCGTGATTGACGGCTACGATCGTCTTA 120 Query 126 GGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGT-CTTCCTTGCCGGGGTGGT 184 ||||||||| ||||||||||||||||||||||||||| ||| || ||||||||||||||| Sbjct 121 GGACGCATCTGGTGCTGTAGAGGATCGTTACTCGGCTCGGTTCTACCTTGCCGGGGTGGT 180 Query 185 CGCACGGCGGTCTGACAG 202 ||||||||||||||||| Sbjct 181 TGCACGGCGGTCTGACAG 198 > AT5G54075.1 | Symbols: U3D | U3D; snoRNA | chr5:21945349-21945709 REVERSE LENGTH=361 Length=361 Score = 318 bits (172), Expect = 5e-86 Identities = 195/205 (95%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCT-AAGGAGACAGGC 59 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 115 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTCAAG-AGACAGGC 173 Query 60 CCTTAACCCTGGTTGATGAACCATGACCGTGCGA-TCAGAGCGTGATTAACGGCTACGAT 118 ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 174 CCTTAACCCTGGTTGATGAACCATGACCGTGCGGCT-AGAGCGTGATTGACGGCTACGAT 232 Query 119 CGTCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGT-CTTCCTTGCCG 177 |||| ||||||||||||||||||||||||||||||||||||||| ||| || |||||||| Sbjct 233 CGTCCTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTCGGTTCTACCTTGCCG 292 Query 178 GGGTGGTCGCACGGCGGTCTGACAG 202 ||||||||||||||||||||||||| Sbjct 293 GGGTGGTCGCACGGCGGTCTGACAG 317 > AT5G53902.1 | Symbols: U3B | U3B; snoRNA | chr5:21887966-21888667 FORWARD LENGTH=702 Length=702 Score = 315 bits (170), Expect = 7e-85 Identities = 195/206 (95%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCT-AAGGAGACAGGC 59 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 339 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTCAAG-AGACAGGC 397 Query 60 CCTTAACCCTGGTTGATGAACCATGACCGTGCGA-TCAGAGCGTGATTAACGGCTACGAT 118 ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 398 CCTTAACCCTGGTTGATGAACCATGACCGTGCGGCT-AGAGCGTGATTGACGGCTACGAT 456 Query 119 CGTCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGTCT-T-CCTTGCC 176 |||| ||||||||||||||||||||||||||||||||||||||| ||| | | ||||||| Sbjct 457 CGTCCTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTCGGTTTCTACCTTGCC 516 Query 177 GGGGTGGTCGCACGGCGGTCTGACAG 202 |||||||||||||||||||||||||| Sbjct 517 GGGGTGGTCGCACGGCGGTCTGACAG 542 > AT4G00975.1 | Symbols: | other RNA | chr4:421973-423258 FORWARD LENGTH=780 Length=780 Score = 215 bits (116), Expect = 7e-55 Identities = 172/197 (87%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 15 CTATAGGCTCGTACCTCTGTTTCCTT--G---ATTTCT-AAGGAGACAGGCCCTTAACCC 68 |||||||||||||| ||||||| ||| | |||||| || |||||||||||| ||||| Sbjct 26 CTATAGGCTCGTACATCTGTTTTCTTGAGAAAATTTCTCAA-GAGACAGGCCCTAAACCC 84 Query 69 TGGTTGATGAACCATGACCGTGC-GATCAGAGCGTGATTAACGGCTACGATCGT-CTTCG 126 | ||||||||||| ||||||||| | | |||||||||| ||||||||||| || ||| | Sbjct 85 TTGTTGATGAACCGTGACCGTGCGGCT-TGAGCGTGATTGACGGCTACGATTGTCCTT-G 142 Query 127 GACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGT-CTTCCTTGCCGGGGTGGTC 185 || ||||||||||||||||||||| ||||||||||| ||| || |||||||||||||||| Sbjct 143 GATGCATCCGGTGCTGTAGAGGATGGTTACTCGGCTCGGTTCTCCCTTGCCGGGGTGGTC 202 Query 186 GCACGGCGGTCTGACAG 202 ||||||||||||||||| Sbjct 203 GCACGGCGGTCTGACAG 219 > AT5G53905.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54062.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21888148-21889254 REVERSE LENGTH=507 Length=507 Score = 169 bits (91), Expect = 6e-41 Identities = 107/114 (94%), Gaps = 4/114 (4%) Strand=Plus/Minus Query 29 CTCTGTTTCCTTGATTTCT-AAGGAGACAGGCCCTTAACCCTGGTTGATGAACCATGACC 87 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 418 CTCTGTTTCCTTGATTTCTCAA-GAGACAGGCCCTTAACCCTGGTTGATGAACCATGACC 360 Query 88 GTGCGA-TCAGAGCGTGATTAACGGCTACGATCGTCTTCGGACGCATCCGGTGC 140 ||||| | ||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 359 GTGCGGCT-AGAGCGTGATTGACGGCTACGATCGTCCTCGGACGCATCCGGTGC 307 > AT5G54070.1 | Symbols: AT-HSFA9, HSFA9 | heat shock transcription factor A9 | chr5:21943983-21945651 FORWARD LENGTH=1512 Length=1512 Score = 159 bits (86), Expect = 3e-38 Identities = 91/93 (98%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCT-AAGGAGACAGGC 59 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 1456 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTCAAG-AGACAGGC 1398 Query 60 CCTTAACCCTGGTTGATGAACCATGACCGTGCG 92 ||||||||||||||||||||||||||||||||| Sbjct 1397 CCTTAACCCTGGTTGATGAACCATGACCGTGCG 1365 Score = 60.2 bits (32), Expect = 3e-08 Identities = 32/32 (100%), Gaps = 0/32 (0%) Strand=Plus/Minus Query 171 CTTGCCGGGGTGGTCGCACGGCGGTCTGACAG 202 |||||||||||||||||||||||||||||||| Sbjct 1363 CTTGCCGGGGTGGTCGCACGGCGGTCTGACAG 1332 > AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: synergid; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53905.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21811633-21814908 FORWARD LENGTH=828 Length=828 Score = 158 bits (85), Expect = 1e-37 Identities = 105/114 (92%), Gaps = 4/114 (4%) Strand=Plus/Minus Query 29 CTCTGTTTCCTTGATTTCT-AAGGAGACAGGCCCTTAACCCTGGTTGATGAACCATGACC 87 ||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||| Sbjct 142 CTCTGTTTCCTTGATTTCTCAA-GAGACAGGCCCTAAACCCTGGTTGATGAACCATGACC 84 Query 88 GTGCGA-TCAGAGCGTGATTAACGGCTACGATCGTCTTCGGACGCATCCGGTGC 140 ||||| | ||||||||||| ||||||||||| ||| ||||||||||||||||| Sbjct 83 GTGCGGCT-AGAGCGTGATTGACGGCTACGATTGTCCTCGGACGCATCCGGTGC 31 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46667522563 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5