BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471166
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10522.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1334 0.0
AT3G61198.1 | Symbols: | other RNA | chr3:22655884-22656599 RE... 320 1e-86
AT5G54075.1 | Symbols: U3D | U3D; snoRNA | chr5:21945349-219457... 318 5e-86
AT5G53902.1 | Symbols: U3B | U3B; snoRNA | chr5:21887966-218886... 315 7e-85
AT4G00975.1 | Symbols: | other RNA | chr4:421973-423258 FORWAR... 215 7e-55
AT5G53905.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 169 6e-41
AT5G54070.1 | Symbols: AT-HSFA9, HSFA9 | heat shock transcripti... 159 3e-38
AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 158 1e-37
> AT1G10522.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to
24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:3469636-3471488 FORWARD LENGTH=980
Length=980
Score = 1334 bits (722), Expect = 0.0
Identities = 888/964 (92%), Gaps = 27/964 (3%)
Strand=Plus/Plus
Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCC 60
Query 61 CTTAACCCTGGTTGATGAACCATGACCGTGCGATCAGAGCGTGATTAACGGCTACGATCG 120
|| ||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 61 CTAAACCCTGGTTGATGAACCATGACCGTGCGGTCAGAGCGTGATTGATGGCTACGATCG 120
Query 121 TCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGTCTTCCTTGCCGGGG 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTTGGTCTTCCTTGCCGGGG 180
Query 181 TGGTCGCACGGCGGTCTGACAGAAAACCCTCAGAGATAAGGTTGAAGAGTGAAAAAAGCA 240
|||||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct 181 TGGTCGCACGGCGGTCTGACAGAAAA--C-AAGAGATAAGGTTGAAGAGTG----AAGCA 233
Query 241 AA-CAGTAGTAATGGCTTCTTCTGCAATGCACGAAGCTCTTTTCTCTTCTCGGCTTCTTC 299
|| | ||||||||| | | | |||||||||||||||| |||||||||||||||||||
Sbjct 234 AAGC-TTAGTAATGG---C-T-T-CAATGCACGAAGCTCTGTTCTCTTCTCGGCTTCTTC 286
Query 300 AAGCCAATTCTTCTTCGTCCTTCCGTTGCGCTCTTCCAATTATCTCTTCACCAGCTGCAG 359
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 AAGTCAATTCTTCTTTTTCCTTCCGTTGCGCTCTTCCAATTATCTCTTCACCAGCTGCAG 346
Query 360 TATCGTGCGCAATCAAATCGACCCAGTTTTTTAAGCAGCGTTGTAGAACCAAATTGAGAG 419
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 347 TATCTTGCGCAATCAAATCGACCCAGTTTTTTAAACAGCGTTGTAGAACCAAAGTGAGGG 406
Query 420 ACTTTTCTCTTTCTTCACAGTCCCGGAGAGGGTTTGTTTGCAGAGCTGCTGAGTACAAGT 479
|||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 407 ACTTTTCTCTATCTTCACTGTCCCGGAGAGGGTTCGTTTGCAGAGCTGCTGAGTACAAGT 466
Query 480 TTCCGGATCCCATACCTGAATTCGCCGAAGCTGAGACTGAGAAGTTTAGGGACCATATGT 539
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 467 TTCCGGATCCCATACCTGAATTCGCCGAAGCTGAGACTGAGAAATTTAGGGACCATATGT 526
Query 540 TAAAGAAACTATCCAAGAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTCGGAATCT 599
|||| |||||||| || ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 527 TAAACAAACTATCAAAAAGAGATCTTTTTGAAGACTCTGTTGATGAAATTGTTGGAGTCT 586
Query 600 GCACTGAGATCTTCGGGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGG 659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 GCACTGAGATCTTCGAGACGTTCTTGCGCAGTGAGTATGGAGGACCTGGTACACTCTTGG 646
Query 660 TCATACCCTTCATTGACATGGCAGATACTCTCAATGAAAGGGAATTGCCTGGAGGTCCAC 719
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 647 TGATACCTTTCATTGACATGGCAGATACTCTCAACGAAAGGGAATTGCCTGGAGGTCCAC 706
Query 720 AGGCCGCACGAGCAGCTATTAAATGGGCTCAGGATCATGTAGACAAGGACTGGAAGGAAT 779
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AAGCCGCCCGAGCAGCTATTAAATGGGCTCAGGATCATGTAGACAAGGACTGGAAGGAAT 766
Query 780 GGACTGGCACTGATTAGTCCT-TGA-AGCAT-AATTATAATCTGTGAGTTATTTAGTTCA 836
|||| ||||||||||||||| || ||||| || ||||||| ||||||||||||||| |
Sbjct 767 GGACCGGCACTGATTAGTCCCCTGGGAGCATTAAGTATAATCCGTGAGTTATTTAGTTTA 826
Query 837 GTAGTGGTGTAGCAGATG-GTACAATATTGAT-TCAAGATTACTGTGTTGTGAAGCACTT 894
||||||| |||||||||| || || | | | || ||||||| ||| |||||||||||
Sbjct 827 GTAGTGGGGTAGCAGATGTGT-CATTGTAAAACTCT-GATTACTATGTCGTGAAGCACTT 884
Query 895 AATA---GATCCAAAACCT-TTTGGTGTAAATTTGTCCAAACGACTGGAAACTAGAAAAA 950
||| |||| ||||| | ||||||||||| |||||||||||||||||||| |||||||
Sbjct 885 AATCTTTGATCAAAAAC-TGTTTGGTGTAAACTTGTCCAAACGACTGGAAACAAGAAAAA 943
Query 951 GAAA 954
||||
Sbjct 944 GAAA 947
> AT3G61198.1 | Symbols: | other RNA | chr3:22655884-22656599
REVERSE LENGTH=622
Length=622
Score = 320 bits (173), Expect = 1e-86
Identities = 190/198 (96%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 6 GGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCCCTTAA 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTAAGGAGACAGGCCCTTAA 60
Query 66 CCCTGGTTGATGAACCATGACCGTGCGATCAGAGCGTGATTAACGGCTACGATCGTCTTC 125
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 61 CCCTGGTTGATGAACCATGGCCGTGCGATCAGAGCGTGATTGACGGCTACGATCGTCTTA 120
Query 126 GGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGT-CTTCCTTGCCGGGGTGGT 184
||||||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 121 GGACGCATCTGGTGCTGTAGAGGATCGTTACTCGGCTCGGTTCTACCTTGCCGGGGTGGT 180
Query 185 CGCACGGCGGTCTGACAG 202
|||||||||||||||||
Sbjct 181 TGCACGGCGGTCTGACAG 198
> AT5G54075.1 | Symbols: U3D | U3D; snoRNA | chr5:21945349-21945709
REVERSE LENGTH=361
Length=361
Score = 318 bits (172), Expect = 5e-86
Identities = 195/205 (95%), Gaps = 5/205 (2%)
Strand=Plus/Plus
Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCT-AAGGAGACAGGC 59
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 115 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTCAAG-AGACAGGC 173
Query 60 CCTTAACCCTGGTTGATGAACCATGACCGTGCGA-TCAGAGCGTGATTAACGGCTACGAT 118
||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 174 CCTTAACCCTGGTTGATGAACCATGACCGTGCGGCT-AGAGCGTGATTGACGGCTACGAT 232
Query 119 CGTCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGT-CTTCCTTGCCG 177
|||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 233 CGTCCTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTCGGTTCTACCTTGCCG 292
Query 178 GGGTGGTCGCACGGCGGTCTGACAG 202
|||||||||||||||||||||||||
Sbjct 293 GGGTGGTCGCACGGCGGTCTGACAG 317
> AT5G53902.1 | Symbols: U3B | U3B; snoRNA | chr5:21887966-21888667
FORWARD LENGTH=702
Length=702
Score = 315 bits (170), Expect = 7e-85
Identities = 195/206 (95%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCT-AAGGAGACAGGC 59
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 339 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTCAAG-AGACAGGC 397
Query 60 CCTTAACCCTGGTTGATGAACCATGACCGTGCGA-TCAGAGCGTGATTAACGGCTACGAT 118
||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 398 CCTTAACCCTGGTTGATGAACCATGACCGTGCGGCT-AGAGCGTGATTGACGGCTACGAT 456
Query 119 CGTCTTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGTCT-T-CCTTGCC 176
|||| ||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct 457 CGTCCTCGGACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTCGGTTTCTACCTTGCC 516
Query 177 GGGGTGGTCGCACGGCGGTCTGACAG 202
||||||||||||||||||||||||||
Sbjct 517 GGGGTGGTCGCACGGCGGTCTGACAG 542
> AT4G00975.1 | Symbols: | other RNA | chr4:421973-423258 FORWARD
LENGTH=780
Length=780
Score = 215 bits (116), Expect = 7e-55
Identities = 172/197 (87%), Gaps = 12/197 (6%)
Strand=Plus/Plus
Query 15 CTATAGGCTCGTACCTCTGTTTCCTT--G---ATTTCT-AAGGAGACAGGCCCTTAACCC 68
|||||||||||||| ||||||| ||| | |||||| || |||||||||||| |||||
Sbjct 26 CTATAGGCTCGTACATCTGTTTTCTTGAGAAAATTTCTCAA-GAGACAGGCCCTAAACCC 84
Query 69 TGGTTGATGAACCATGACCGTGC-GATCAGAGCGTGATTAACGGCTACGATCGT-CTTCG 126
| ||||||||||| ||||||||| | | |||||||||| ||||||||||| || ||| |
Sbjct 85 TTGTTGATGAACCGTGACCGTGCGGCT-TGAGCGTGATTGACGGCTACGATTGTCCTT-G 142
Query 127 GACGCATCCGGTGCTGTAGAGGATCGTTACTCGGCTAGGT-CTTCCTTGCCGGGGTGGTC 185
|| ||||||||||||||||||||| ||||||||||| ||| || ||||||||||||||||
Sbjct 143 GATGCATCCGGTGCTGTAGAGGATGGTTACTCGGCTCGGTTCTCCCTTGCCGGGGTGGTC 202
Query 186 GCACGGCGGTCTGACAG 202
|||||||||||||||||
Sbjct 203 GCACGGCGGTCTGACAG 219
> AT5G53905.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT5G54062.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr5:21888148-21889254
REVERSE LENGTH=507
Length=507
Score = 169 bits (91), Expect = 6e-41
Identities = 107/114 (94%), Gaps = 4/114 (4%)
Strand=Plus/Minus
Query 29 CTCTGTTTCCTTGATTTCT-AAGGAGACAGGCCCTTAACCCTGGTTGATGAACCATGACC 87
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 418 CTCTGTTTCCTTGATTTCTCAA-GAGACAGGCCCTTAACCCTGGTTGATGAACCATGACC 360
Query 88 GTGCGA-TCAGAGCGTGATTAACGGCTACGATCGTCTTCGGACGCATCCGGTGC 140
||||| | ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 359 GTGCGGCT-AGAGCGTGATTGACGGCTACGATCGTCCTCGGACGCATCCGGTGC 307
> AT5G54070.1 | Symbols: AT-HSFA9, HSFA9 | heat shock transcription
factor A9 | chr5:21943983-21945651 FORWARD LENGTH=1512
Length=1512
Score = 159 bits (86), Expect = 3e-38
Identities = 91/93 (98%), Gaps = 2/93 (2%)
Strand=Plus/Minus
Query 1 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCT-AAGGAGACAGGC 59
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1456 GAACAGGATCTGTTCTATAGGCTCGTACCTCTGTTTCCTTGATTTCTCAAG-AGACAGGC 1398
Query 60 CCTTAACCCTGGTTGATGAACCATGACCGTGCG 92
|||||||||||||||||||||||||||||||||
Sbjct 1397 CCTTAACCCTGGTTGATGAACCATGACCGTGCG 1365
Score = 60.2 bits (32), Expect = 3e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Minus
Query 171 CTTGCCGGGGTGGTCGCACGGCGGTCTGACAG 202
||||||||||||||||||||||||||||||||
Sbjct 1363 CTTGCCGGGGTGGTCGCACGGCGGTCTGACAG 1332
> AT5G53740.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: synergid; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G53905.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:21811633-21814908 FORWARD LENGTH=828
Length=828
Score = 158 bits (85), Expect = 1e-37
Identities = 105/114 (92%), Gaps = 4/114 (4%)
Strand=Plus/Minus
Query 29 CTCTGTTTCCTTGATTTCT-AAGGAGACAGGCCCTTAACCCTGGTTGATGAACCATGACC 87
||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 142 CTCTGTTTCCTTGATTTCTCAA-GAGACAGGCCCTAAACCCTGGTTGATGAACCATGACC 84
Query 88 GTGCGA-TCAGAGCGTGATTAACGGCTACGATCGTCTTCGGACGCATCCGGTGC 140
||||| | ||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 83 GTGCGGCT-AGAGCGTGATTGACGGCTACGATTGTCCTCGGACGCATCCGGTGC 31
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5