BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471168

Length=959
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  1131    0.0  


> AT1G10530.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT1G60010.1); Has 143 Blast hits to 143 proteins 
in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 
(source: NCBI BLink). | chr1:3471456-3472672 REVERSE LENGTH=996
Length=996

 Score = 1131 bits (612),  Expect = 0.0
 Identities = 783/861 (91%), Gaps = 29/861 (3%)
 Strand=Plus/Plus

Query  112  ATATGGGGAATTGTCAGGCGGTGAACGCGGCGGTGCTGGTTCTACAACACCCCGGCGGGA  171
            ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct  145  ATATGGGGAATTGTCAGGCGGTGAATGCGGCAGTGCTGGTTCTACAACATCCCGGCGGGA  204

Query  172  AAATCGACCGGTACTATGGCTCTGTCTCCGTCAGCGAGGTCATGGCTATGTATCCTGGTC  231
              ||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||
Sbjct  205  TTATCGACCGGTACTATAGCTCTGTATCCGTCACCGAGGTCATGGCTATGTATCCTGGTC  264

Query  232  ACTACGTCTCTCTCATCATTCCTTTAACGGAGGAGGAAGAGAGGAATATTCCGGCGACGG  291
            |||||||||||||||||||||||||  | ||||||||||||| ||||||||| |||||||
Sbjct  265  ACTACGTCTCTCTCATCATTCCTTTGTCAGAGGAGGAAGAGAAGAATATTCCAGCGACGG  324

Query  292  TGAAGGGAGATGATAAGAAACAGAGGAAGGCTGTGAGGTTTACACGTGTTCAGCTTCTCC  351
             |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct  325  AGAAGGGAGATGATAAGAAGCAGAGGAAGGCTGTGAGGTTTACACGTGTCCAGCTTCTCC  384

Query  352  GGCCAACGGAGAATCTCGTGCTCGGTCACGCTTACCGGCTCATTACTTCACAAGAAGTGA  411
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  385  GGCCAACGGAGAATCTTGTGCTCGGTCACGCTTACCGGCTCATTACTTCACAAGAAGTGA  444

Query  412  TGAAGGTTTTACGGGAAAAGAAGAGCGCCAAGACGAAAAAGCATCAGATTGAGACA-ACG  470
            ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | || 
Sbjct  445  TGAAGGTGTTACGGGAAAAGAAGAGCGCCAAGACGAAAAAACATCAGATTGAGA-AGACA  503

Query  471  ACCACGTTGAACAAGTTGTCGGAGAAGAAAGTCCCGGAGAAGAAACAAGGGAAGCAATTT  530
            ||||||  ||| ||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct  504  ACCACGGCGAAGAAGTTCTCGGACAAGAAAGTTCCGGAGAAGAAACAAGGGAAGCAATTT  563

Query  531  CGTGTGATAACGAATTCAACTTCCCTTTTAAAGTCTAAAACATGGAGGCCATCTCTTCAG  590
            ||||| |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  564  CGTGTTATAAGGAATTCAACTTCCCTCTTAAAGTCTAAAACATGGAGGCCGTCTCTTCAG  623

Query  591  AGCATCTCCGAAGCTACGAGCTGAATGTTGTTGGTTTTTGTTCGAGGGACGAGAAACAGT  650
            ||||||||||||||||| ||||||||||| |||||||||||||||   |  |    ||||
Sbjct  624  AGCATCTCCGAAGCTACTAGCTGAATGTTTTTGGTTTTTGTTCGA---A--A----CAGT  674

Query  651  ATCTGGATCTAGAGTGGAGAACCTGATCCGAAACTCTACTGAATAAATTTT-GGTTCTGT  709
            |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||
Sbjct  675  ATCTGGATCTAGAGTGGAGAGCCTGATCCGAAACTCTACTGAATAATTTTTTGGTTCTGT  734

Query  710  TCCCtttttttGTTTGCCTGGTTATTACAGAGGATGAA-G--TG---T--AGATCAAGAT  761
            |   ||||||| ||  ||||| ||||||||||||| || |  ||   |  |||| |||||
Sbjct  735  T---TTTTTTT-TT--CCTGGATATTACAGAGGATAAACGGATGGAGTCTAGATGAAGAT  788

Query  762  GTGACGAGATAAGTACAGAGAAAGCTCAAGAGAGTCATCAGAACAGAGCTTCTTCTTCCt  821
            |||| |||||||||||||||||||||||||||||||| || |||||| ||||||||||||
Sbjct  789  GTGAAGAGATAAGTACAGAGAAAGCTCAAGAGAGTCAACAAAACAGAACTTCTTCTTCCT  848

Query  822  tttttttCTCTCTATCGTCGATGTATATATTTTCGCAGATGGAGAAATCGATGGAAGTTT  881
            |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct  849  TTTTTTTCCCTCTATCGTCGATGTATATATTTTTGCAGATGGGGAAATCGATGGAAGTTT  908

Query  882  GTAAGAAGTGTGGTTTT-GTTGATGTG--AGATTGATTCAGAGGAAACAGAGCTTCTGAA  938
            ||||||||||||||||| |||||||||  |||||||||||||||| ||| ||||||||||
Sbjct  909  GTAAGAAGTGTGGTTTTTGTTGATGTGTGAGATTGATTCAGAGGACACAAAGCTTCTGAA  968

Query  939  TATGAACAAGAAAGAGCTTTT  959
            || |||||| ||| |||||||
Sbjct  969  TAAGAACAATAAAAAGCTTTT  989



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46918693298


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5