BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471170
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10550.1 | Symbols: XTH33, XET | xyloglucan:xyloglucosyl tra... 1616 0.0
> AT1G10550.1 | Symbols: XTH33, XET | xyloglucan:xyloglucosyl transferase
33 | chr1:3479153-3480988 REVERSE LENGTH=1068
Length=1068
Score = 1616 bits (875), Expect = 0.0
Identities = 958/998 (96%), Gaps = 5/998 (1%)
Strand=Plus/Plus
Query 1 TCAGTAATCAAAAGTATCAAACACAAAATGAAGATTATGTGGGAAACAGCAGTTGTGTTT 60
|||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 5 TCAGTAATCAGAAGTATAAAACACAACATGAAGATTATGTGGGAAACAGCAGTTGTGTTT 64
Query 61 TGTCTTTGTTCATTGTCTTTGGTTTCTTCACACAGCAGGAAATTCACAACACCAAACGTG 120
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TGTCTCTGTTCGTTGTCTTTGGTTTCTTCACACAGCAGGAAATTCACAACACCAAACGTG 124
Query 121 ACACGCCTCACAGATCAATTCACTAAGATCACCATTGAAAATGGCTTCGT-CAGACGTTT 179
|||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||
Sbjct 125 ACACGCCTCACAGATCAATTCAGTAAGATCGCCATTGAAAATGGCTTC-TCCAGACGTTT 183
Query 180 CGGAGCTCATAATATTCAGGTCAATGGCTCCCTCGCAAAGCTCACTCTCGACAAATCCTC 239
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 184 CGGAGCTCACAATATTCAGGTCAATGGCTCCCTCGCTAAGCTCACTCTCGACAAATCCTC 243
Query 240 TGGAGCTGGGTTGGTGTCAAAGAACAAGTATCAGTATGGTTTCTTCAGTGCAAGACTCAA 299
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 244 CGGAGCTGGGTTGGTGTCAAAGAACAAGTATCACTATGGTTTCTTCAGTGCAAGACTCAA 303
Query 300 GCTTCCTGCTGGATTTGCCTCTGGTGTTGTGGTTGCTTTCTATTTATCAAACGCAGAGAG 359
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GCTTCCCGCTGGATTTGCCTCTGGTGTTGTGGTTGCTTTCTATTTATCAAACGCAGAGAC 363
Query 360 TTATCCAAAAAACCACGACGAGATAGACATAGAATTGTTGGGTAGAAGTAGGAGAGATGA 419
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 TTATCCGAAAAGCCACGACGAGATAGACATAGAATTGTTGGGTAGAAGTAGGAGAGATGA 423
Query 420 TTGGACGATCCAAACGAATGTGTATGCAAATGGAAGTACGAGAACGGGAAGAGAAGAGAA 479
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 424 TTGGACGATCCAGACGAATGTATATGCAAATGGAAGTACTAGAACGGGAAGAGAAGAGAA 483
Query 480 GTTCTATTTTTGGTTTGATCCAACGCAAGCCTTTCACGACTATACCCTCATTTGGAACTC 539
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GTTTTATTTTTGGTTCGATCCAACGCAAGCCTTTCACGACTATACCCTCATTTGGAACTC 543
Query 540 CCACCATACTGTATTTTTGGTAGACAACATTCCGGTTAGGCAGTTTCCGAACCGGGGAGC 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 544 CCACCATACTGTATTTTTGGTAGACAACATTCCGGTTAGGCAGTTTCCAAACCGGGGAGC 603
Query 600 CTTCACAAGCGCGTATCCGTCTAAACCGATGTCTCTATACGTCACCGTTTGGGACGGTTC 659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 CTTCACAAGCGCGTACCCGTCTAAACCGATGTCTCTATACGTCACCGTTTGGGACGGTTC 663
Query 660 AGAGTGGGCCACTAAAGGTGGTAAGTACCCCGTCAACTACAAGTACGCCCCTTTCGTGGC 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AGAGTGGGCCACTAAAGGTGGTAAGTACCCCGTCAACTACAAGTACGCCCCTTTCGTGGT 723
Query 720 CTCCGTTGCTGACGTGGAGTTAAGTGGCTGCTCCGTTAACAACGGCTCCTCTACCAGGTC 779
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 724 TTCCGTTGCTGACGTGGAGTTAAGTGGCTGTTCCGTTAACAACGGCTCCTCTACCGGGTC 783
Query 780 CGGGCCATGTACCAAGTCGGGCGGGTCGATTTCGAGTCTGGACCCTGTTGATGGTCAGGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 CGGGCCATGTACCAAGTCGGGCGGGTCGATTTCGAGTCTGGACCCTGTTGATGGTCAGGA 843
Query 840 TTTTGCCACGTTGTCGAAAAATCAGATCAATGCCATGGATTGGGCTCGGAGAAAGCTAAT 899
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct 844 TTTTGCCACGTTGTCGAAGAATCAGATCAATGCCATGGATTGGGCTAGGAGAAAGCTGAT 903
Query 900 GTTCTATTCTTATTGTAGTGATAAGTCGAGATACAAAGTCATGCCTGCTGAGTGCAACTG 959
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 904 GTTCTATTCTTATTGCAGTGATAAGCCAAGATACAAAGTCATGCCTGCTGAGTGCAACTG 963
Query 960 ATTTTTAATTTAGTTAAAACACACAACATTGTTACTTT 997
|||||| ||| ||||||||||||| ||||||||||
Sbjct 964 ATTTTTTTTTTTGTTAAAACACACA---TTGTTACTTT 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50535551882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5