BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471171
Length=2383
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10560.1 | Symbols: PUB18, ATPUB18 | plant U-box 18 | chr1:3... 3448 0.0
> AT1G10560.1 | Symbols: PUB18, ATPUB18 | plant U-box 18 | chr1:3484580-3486965
FORWARD LENGTH=2386
Length=2386
Score = 3448 bits (1867), Expect = 0.0
Identities = 2221/2392 (93%), Gaps = 24/2392 (1%)
Strand=Plus/Plus
Query 1 AAAACAAACTTTGATCTA-TAAGTCTTAGCAGCATGATCCATACGAAAACCGGGTCTGGT 59
|||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACAAACTTTAATCTACAAAGTCATAGCAGCATGATCCATACGAAAACCGGGTCTGGT 60
Query 60 CGTCGGATCTTGACCTTTCCGGCTGTGCAACCATGCGAATCAATCTCCATAGTCACCTTA 119
|||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||| ||
Sbjct 61 CGTCGGATCTTGACATTTCCGACTGTGGAACCATCCGAATCAATCTCCATAGTCACCCTA 120
Query 120 CTGGACTCACTTATTCAACTAGCCGGCGACATTCTCACATTTAAGTCTAAACACTTCTCC 179
|||||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 121 TTGGACTCACTGATTCAACTCGCCGGCGACATTCTCACATTCAAGTCGAAACACTTCTCT 180
Query 180 ACCAATAAACAAAGCTTCAGAGATACTCTTAGGCGGATCCGAAACCTAGTTCTTGTCTTC 239
||||||||||||||||||||||| ||||| |||||||||| ||||||| || ||||||||
Sbjct 181 ACCAATAAACAAAGCTTCAGAGAAACTCTCAGGCGGATCCAAAACCTACTTGTTGTCTTC 240
Query 240 GAAGAGATCCGGATCCGGGTCGGAAATTTC-AGACGCTATTTCCACAACTCTGCCGCCGT 298
|||||||| ||||||||| || |||| ||| |||||||| ||||| ||||||||||||
Sbjct 241 GAAGAGATTCGGATCCGGATCAGAAA-TTCGAGACGCTACTTCCATGACTCTGCCGCCGC 299
Query 299 GTCGAGCCTCAAGGAGATCCACGTCAGCTTCCAAAAGCTCAAGTTCCTTTTTGAAGACTG 358
||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 300 GTCGAGCCTCAAGGAGATCCACGTCGGCTTCCAAAAGCTCAAGTTCCTTCTAGAAGACTG 359
Query 359 CACAAGAGACGGAGCTAGACTATGCATGATGATGAACTCGGATCAAGTCTCGGATCATCT 418
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CACGAGAGACGGAGCTAGACTATGCATGATGATGAACTCGGATCAAGTCTCGGATCATCT 419
Query 419 CCGGGTCCTGACTCGATCCATTTCCACCAGCCTTAGTGCGTTTCCTGTCGCCTCCGTTGA 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 CCGGGTCCTGACTCGATCCATTTCCACCAGTCTTAGTGCGTTTCCTGTCGCCTCCGTTGA 479
Query 479 CTTACCGAGCGAAGTCAACGAGCTTATTGACTTAGTGGTGCGGCAAGCCCGTAAGTACGG 538
|||| ||| ||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 480 CTTAACGACCGAAGTCAACGAGCTAATTGATTTAGTGGTGCGGCAAGCTCGTAAGTACGG 539
Query 539 AGTCCAACATGAAACAAATGATAAACGGGCCATGAGCTCTGTTAATCGGATCCTTGCTCT 598
|||||||| |||||||||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct 540 AGTCCAACCTGAAACAAATGATAAACGGGCCGTGAGCTCCATTAATAGGATCCTTGCTCT 599
Query 599 GTTTGCGAACAAAGTCGTCCCGGATCCAGATGAGATAAACCGGATCCTGGATCACGTAGG 658
||||| ||||| ||||||||||||||| ||||| || ||| ||||| |||||||||||||
Sbjct 600 GTTTGTGAACAGAGTCGTCCCGGATCCGGATGAAATTAACAGGATCTTGGATCACGTAGG 659
Query 659 GATCAGAAAATGGGGAGATTGCGTTAAAGAGATCAACTTTATCGGAGAAGAGATAGCTGC 718
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 660 GATCAGAAAATGGGGAGATTGCGTTAAAGAGATAAACTTTCTCGGAGAAGAGATAGATGC 719
Query 719 AGAGCGGTTAGATGAGAAGAAGAAGAAGAGCAACGTTCAAGTCGAGCTTCTCAGTAGCTT 778
||| |||||||||||||||||||||||||| | || ||||||||||||||||||||| ||
Sbjct 720 AGAACGGTTAGATGAGAAGAAGAAGAAGAGTAGCGATCAAGTCGAGCTTCTCAGTAGTTT 779
Query 779 AATGGGATTCATATGCTATTGCAGATGCGTTATACTTCGACGGATCGAGAGAGATGATGA 838
||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 780 AATGGGATTCATATGTTATTGCAGATGCATTATACTTGGACGGATCGAGAGAGATGATCA 839
Query 839 TGATCATCATAAC-AACGATGGTATCATGAAAGATCAAGACTTGATTCGAGGGTTGAAAG 897
| || ||||| | || |||||||| | ||||||||| |||||||| ||||| |||||||
Sbjct 840 TCATAATCATCATGAA-GATGGTATAAAGAAAGATCATGACTTGATCCGAGGATTGAAAG 898
Query 898 TTGAGGATCTCCTTTGTCCAATTTCTCTAGAGATTATGGCGGATCCTGTGGTTATAGAAA 957
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 899 TTGAGGATCTCCTTTGTCCAATTTCACTAGAGATTATGACGGATCCTGTGGTTATAGAAA 958
Query 958 CAGGGCACACTTATGATCGGAGCTCCATCACTAAATGGTTTGGATCCGGGAACATTACGT 1017
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 959 CAGGCCACACTTATGATCGGAGCTCCATCACTAAATGGTTCGGATCCGGGAACATCACGT 1018
Query 1018 GCCCTAAAACCGGGAAGATTCTGGCGAGTACTGAGTTGGTTGATAACGTATCCGTGAGGC 1077
|||||| |||||| ||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 1019 GCCCTATAACCGGAAAGATTCTGACTAGTACCGAGTTGGTTGATAACGTATCCGTGAGGC 1078
Query 1078 AAGTGATTCGAAAGCATTGCAAAACAAACGGCATCACTTTGGCGGGGATTAGCCGGAGAA 1137
|||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1079 AAGTGATTCGAAAGCACTGCAAAACAAACGGCATCGTTTTGGCGGGGATTAGTCGGAGAA 1138
Query 1138 GGAGGACTCAAGATGACGTGG-CGCCGGAGAGTTTGGCTTCAAAGGGAGCTGGGAAACTC 1196
| | || ||| |||||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 1139 GAAAGAGTCACGATGACGTGGTC-CCGGAGAGTTTGGCTGCAAAGGGAGCTGGGAAACTC 1197
Query 1197 ATCGCAAAGTTTCTCACTTCAGAGTTAATCAATGGCAGTGAAGAGATGATTTACAGAGCC 1256
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1198 ATCGCAAAGTTTCTCACTTCAGAGTTAATCAATGGCGGTGAAGAGATGATTTACAGAGCC 1257
Query 1257 GTGAGGGAAATTCGTGTTCAGACCAAGACAAGTAGTTTTAATAGGTCTTGTCTGGTTAAA 1316
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1258 GTGAGAGAGATTCGTGTTCAGACCAAGACAAGCAGTTTTAATAGGTCTTGTCTGGTTAAA 1317
Query 1317 GCTGGTGCTGTAACTCCCCTTTTAAAGCTTCTTAGCTCCGGAGAT-TCCAGAATTCAAGA 1375
||||||||||| ||||| |||||||||||||||||||||| |||| || || ||||||||
Sbjct 1318 GCTGGTGCTGTGACTCCACTTTTAAAGCTTCTTAGCTCCGTAGATATC-AGGATTCAAGA 1376
Query 1376 AAACGCAATGGCTGGGATCTTGAATCTTTCCAAGCACGTTACCGGAAAATCCAAGATTGC 1435
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1377 AAACGCAATGGCTGGGATCTTGAATCTTTCCAAGCACGTTACCGGAAAATCTAAGATTGC 1436
Query 1436 CGGAGAAGGGTTGAAGAT-CATTGTAGAGATTCTTAACGAAGGAGCTAAAACAGAGACGA 1494
||||||||||| ||||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 1437 GGGAGAAGGGTTAAAGATAC-TTGTAGAGATTCTCAACGAAGGAGCTAAAACAGAGACGA 1495
Query 1495 GACTATACTCTGCTTCTTCTCTGTTTTATCTCTCTTCCGTTGAAGATTACAGCAGATTAA 1554
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1496 GACTATACTCTGCTTCTGCTCTGTTTTATCTCTCTTCCGTTGAAGATTACAGCAGATTGA 1555
Query 1555 TCGGAGAGAATCCAGACGCGATTTCGGGATTGATGAATATCGTTAAAGGAGAAGATTACG 1614
||||||| |||||||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1556 TCGGAGAAAATCCAGATGCGATTCCGGGATTGATGAATATCGTTAAAGGAGATGATTACG 1615
Query 1615 GCGATTCCGCAAAACGTAACGGGTTGCTTGCGGTAATGGGTTTGTTAATGCAATCCGATA 1674
|||||||||| ||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct 1616 GCGATTCCGCCAAACGTAGCGCGTTGCTTGCGGTTATGGGTTTGTTAATGCAATCCGATA 1675
Query 1675 ATCATTGGCGTGTTCTCGCCGCCGGAGCTGTTCCGATTCTTCTTGATCTGTTGAGATCGG 1734
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 ACCATTGGCGTGTTCTCGCCGCCGGAGCTGTTCCGATTCTTCTTGATCTGTTGAGATCGG 1735
Query 1735 AAGAAATTAGCGGCGAACTCACGGCGGATTGTTTAGCGACGTTGGCGAAGCTTGCGGAGT 1794
|| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1736 GGGAGATTAGCGGCGGACTCACGGCGGATTGTTTAGCGACGTTGGCGAAGCTGGCGGAGT 1795
Query 1795 ATCCTGATGGGACGATTGGGGTGATTCGTCGTGGCGGTTTGAAACTCGCGGTAAAGATTT 1854
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1796 ATCCTGATGGGACGATTGGGGTGATTCGTCGTGGCGGTTTGAAACTCGCGGTGAAGATTT 1855
Query 1855 TGTCTTCGTCGGAAGATTCTCCGGCGGCGGTGAAGAAGCATTGTGTTGCTCTGATTCTGA 1914
||||||||||||| |||||||||| |||||||||| |||||||||||| ||||||| |||
Sbjct 1856 TGTCTTCGTCGGAGGATTCTCCGGTGGCGGTGAAGCAGCATTGTGTTGGTCTGATTTTGA 1915
Query 1915 ACTTGTGTCTTAACGGAGGACGTGACGTTGTTGGGGTTCTGGTAAAGAACACGTTGGTAA 1974
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| |
Sbjct 1916 ACTTGTGTCTTAACGGAGGACGTGACGTCGTTGGGGTTCTGGTGAAGAATTCGTTGGTCA 1975
Query 1975 TGGGGTCGCTTTACACGGTGTTAAGTAACGGCGAATGTGGAGGAAGCAAGAAAGCTAGTG 2034
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1976 TGGGGTCGCTTTACACGGTGTTAAGTAACGGCGAATATGGAGGAAGCAAGAAGGCTAGTG 2035
Query 2035 CGCTTATTAGAATGATCCATGAGTTCCAGGAGAGGAAAACCGGTTCGGTTGAACCGAATC 2094
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 CGCTGATCAGAATGATCCATGAGTTCCAGGAGAGGAAAACCGGTTCGGTTGAACCGAATC 2095
Query 2095 TTCAAAGAGGACGGTTCGTCCACGCCTGGTGATTTCGGTACAAAGTAACTCTTGAGTATT 2154
||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||
Sbjct 2096 TTCAAAGAGGACGGTTCGTTCACGCCTGGTGATTTTGGTACACAGTAACTCTTGAGTATT 2155
Query 2155 TTAAAGAGTTGATTATTTACCAAAAAGGAAATTAAATAATTTTGGTTAAGGGTGAAATTC 2214
|||||||||| ||| | |||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 2156 TTAAAGAGTT-ATT-T--ACCATAAAGAAAACTAAATAATTTTGGTTAAGGGTGAAATTC 2211
Query 2215 TTTTATTA-TTTCTTACGTAAATGGTTTAGTGTTTGTATATT-AGCTCGGGTTTTTATTT 2272
|||||||| ||| ||| ||||| ||||||||||||||||||| |||||||||||| ||||
Sbjct 2212 TTTTATTAATTT-TTATGTAAAGGGTTTAGTGTTTGTATATTTAGCTCGGGTTTT-ATTT 2269
Query 2273 TAATAAACAAAAGAGCTACCTGGGATGGCA-TAAGCTTCAGATTTTTAAAGAAGAAGCTG 2331
| |||||| |||||||||| |||||||||| |||||||||| ||||| |||||| |||
Sbjct 2270 TCATAAACCAAAGAGCTAC-TGGGATGGCAATAAGCTTCAGTTTTTTTAAGAAG---CTG 2325
Query 2332 TGTCCATAGTCCACAATGTAATTATAAATGGATCAATAAAAACTATTACAAT 2383
|||||||| |||| ||||||||||||| || |||||||||||||||||||||
Sbjct 2326 TGTCCATATTCCATAATGTAATTATAACTGAATCAATAAAAACTATTACAAT 2377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118322684565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5