BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471173
Length=1865
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10570.1 | Symbols: OTS2, ULP1C | Cysteine proteinases super... 2684 0.0
> AT1G10570.1 | Symbols: OTS2, ULP1C | Cysteine proteinases superfamily
protein | chr1:3487594-3491277 FORWARD LENGTH=1936
Length=1936
Score = 2684 bits (1453), Expect = 0.0
Identities = 1754/1893 (93%), Gaps = 45/1893 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAGACAAAGAGTAATCGAGGTAGATCGTGTGGAGAAGACAACAAAGTTCAACATA 60
|||||||||||||||| ||||||| ||||||| ||| ||||| |||| ||| ||||||
Sbjct 46 ATGAAGAGACAAAGAGCAATCGAGTTAGATCGAGTGAAGAAG---ACAATGTTGAACATA 102
Query 61 GATTGGGACGATGCTTTGGGTGAAGAAGAAGTTCCCGAGCTCGAGATCATCGCAACTGAC 120
|||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||
Sbjct 103 GATTGGGACGATGCTTTGGGCGATGAGGAAGTTCCCGAGCTCGAGATCATCGCTACTGAC 162
Query 121 AAAATTCCCCCGCGTGAGCCTACTCTTTCCGGCGATGAACCCGCCGTCTGC-GTGCGATC 179
|||||||| |||||||| ||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 163 AAAATTCCGCCGCGTGAACCTACTCTTTCCGGCTATGAACCCGCCGTCT-CTGTGCGATC 221
Query 180 CCTCAGGGATAACGAACTCGACGATCATCTGAAGCGTCAGAGATCACTTCTTACTCGTCT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 CCTCAGGGATAACGAACTCGACGATCATCTGAAGCGTCAGAGATCACTTCTTACTCGTCT 281
Query 240 CGGTGATAAGTTGCCAGATAAGGGCGAGAAAATCCGAAACAGAATCGGAGACCTCGAGTA 299
||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 282 CGGTGATAAGTTGGCAGACAAGGGCGAGAAAATCCGAAACAGAATCGGAGAGCTCGAGTA 341
Query 300 CGAGAAGCAGCGAAGGATGTTCCAACAACGGACCAAAATGCAGGAAGCGGACAACGGATG 359
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 342 CGAGAAGCAGCGAAGGATGTTCCAACAACGGACCAAAATGCAGGATGCAGACAACGGATG 401
Query 360 TCAGATTCTTGAGCAACCTAAAAGCTCAGATGTGTTTATGCAAGCGAGTACAGCCTCAAA 419
||||||||| ||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 402 TCAGATTCTCGAGAAACCAAAAAGCTCAGATGTGTTTATGCGAGCGAGTACAGCCTCAAA 461
Query 420 AGACACCTCTGGACAAGGGAATACGGGATCGAAAGACGTGTCTCGGTCAACATTTGCTGC 479
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 462 AGACACCTCTGGACAAGGGACTTCGGGATCGAAAGACGTGTCTCGGTCAACATTTGCTGC 521
Query 480 TCATTTTAGTGACAATCCT-AAAACGGGAGCTCAATCAGTAAAACT-GTTTAACGACAAA 537
|||||||||||||||| || |||| |||| ||||| |||| ||||| | |||| ||||||
Sbjct 522 TCATTTTAGTGACAAT-CTCAAAATGGGACCTCAACCAGTGAAACTAG-TTAATGACAAA 579
Query 538 CTACAAGATTTGGGACGCGGAAGCTGGAAAAGCAAATCAAATAGAGACTCAATAATAGAG 597
||||||||||||||||| |||||||||| ||||||| | |||||||||||||||||||||
Sbjct 580 CTACAAGATTTGGGACGTGGAAGCTGGATAAGCAAAGCTAATAGAGACTCAATAATAGAG 639
Query 598 AAAAGTAATGGGTGGCGGTCGCTGCCAAAATTGAGCAAGTGTAAGGTCAGTGAAAAGAAC 657
|||| ||||| ||||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 640 AAAAATAATGTGTGGCGGTCGCTGCCAAGATTAAGCAAGTGTAAGGTCAGTTTAAAGAAC 699
Query 658 TTTTATTCTGAATCTAAGGATCCAAAAGGGGTTCGAAAACCCAATGAAGCTTATGGTAAG 717
||||||||||| ||||||||||| ||||||| ||||| ||||||||||||||||||||||
Sbjct 700 TTTTATTCTGAGTCTAAGGATCCTAAAGGGGATCGAAGACCCAATGAAGCTTATGGTAAG 759
Query 718 GGAAAGCCAAAGGAATCTTCCCCTTACTTACTTGT---TGATGATGATGACGACGACAAC 774
||||||||||| |||||||||||||| |||||||| |||||||||| ||| ||| ||
Sbjct 760 GGAAAGCCAAATGAATCTTCCCCTTATTTACTTGTCGACGATGATGATGGCGATGACGAC 819
Query 775 CCCGTCATTAGCTATGAAACTCCCAGGGAGTGGAGTTCGAAAGCGTCGCCATC-ACAGAG 833
|||||| | ||||||||||||||| | ||||||| ||||| |||||| | ||||||
Sbjct 820 AAAGTCATTGGTTATGAAACTCCCAGGCATTGGAGTTTAAAAGCATCGCCA-CTACAGAG 878
Query 834 TTCAAGCTGCAGGAAGAAATCAGATGATAAAGTGATTAATTTGGACGAAGATGAACCTCA 893
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 879 TTCAAGCTGCAGGAAGAAATCAGATGATAAAGTGATTAATTTGGATGAAGATGAACCTCT 938
Query 894 GTCTCCAATGGTAGTAGAGGAAGCATGTGAACTTCCTGAAGGGTTACCTGAAGATATTTA 953
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 939 GTCTCCAATGGTAGTAGAGGAAGCATGTGAACTTCCTGAAGGGTTACCAGAAGATATTTA 998
Query 954 CTACCCATCAAGTGATCAAAGTGATGGGCGAGACCTTGTTCAAGTATCTCTTAAAGATTT 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 999 CTACCCATCAAGTGATCAAAGTGATGGGCGAGACCTTGTTCAAGTATCTCTTAAAGATCT 1058
Query 1014 GAAATGCCTTTCACCTGGGGAATATCTTACATCGCCAGTTATAAATTTCTACATCAGGTT 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GAAATGCCTTTCACCTGGGGAATATCTTACATCGCCAGTTATAAATTTCTACATCAGGTA 1118
Query 1074 CTTGCAACATCACGTGTTTTCAGCGGATGAGACAGCTGCGAATTGTCATTTCTTCAATAC 1133
| |||||||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||
Sbjct 1119 CGTGCAACATCACGTGTTTTCAGCTGATAAGACTGCTGCTAATTGTCATTTCTTCAATAC 1178
Query 1134 GTTTTTCTACAAGAAGCTCATAGAAGCTGTTTCGTACAAGGGTAACGACAAGGATGCATA 1193
|||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||||||
Sbjct 1179 GTTTTTCTACAAGAAGCTCACAGAAGCTGTTTCATACAAGGGTAATGACAGGGATGCATA 1238
Query 1194 TTTTGTGAAGTTCAGGCGGTGGTGGAAGGGTTTTGATCTTTTCTGTAAATCATATATATT 1253
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1239 TTTTGTGAAGTTCAGGCGGTGGTGGAAGGGTTTTGATCTATTCTGTAAATCATATATATT 1298
Query 1254 TATACCGATACATGAAGATCTCCACTGGAGCTTAATAATAATTTGCATCCCAGACGAGGA 1313
|||||| |||||||||||||| |||||||||||| | |||||||||||||||||| ||||
Sbjct 1299 TATACCAATACATGAAGATCTTCACTGGAGCTTAGTCATAATTTGCATCCCAGACAAGGA 1358
Query 1314 GGACGAATCGGGATTGACTATAATTCACTTGGATTCATTGGGACTTCACCCAAGAAGTTT 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1359 GGACGAATCGGGATTGACTATAATTCACTTGGATTCATTGGGACTTCACCCAAGAAATTT 1418
Query 1374 GATTTTTAATAATGTCAAAAGATTTCTGAGAGAGGAATGGAACTATCTAAATCAAGATGC 1433
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 GATTTTCAATAATGTCAAAAGATTTCTGAGAGAGGAATGGAACTATCTAAATCAAGATGC 1478
Query 1434 TCCATTGGATTTACCAATTTCAGCAAAAGTATGGAAAGACCTTCCCAATATGATCAACGA 1493
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1479 TCCATTGGATTTACCAATTTCAGCAAAAGTATGGAGAGACCTTCCCAATATGATCAACGA 1538
Query 1494 AGCTGAAGT-----T-CCACAACAGAAGAATGATTTCGACTGTGGTCTGTTTGTGCTCTT 1547
||||||||| | |||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1539 AGCTGAAGTGCAGGTTCCACAACAGAAGAACGATTTCGACTGTGGTCTGTTTCTGCTCTT 1598
Query 1548 CTTCATAAGACGTTTCATCGAAGAGGCTCCTCAAAGGCTGACATTGCAGGATTTGAAAAT 1607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1599 CTTCATAAGACGTTTCATCGAAGAGGCTCCTCAAAGGCTGACATTGCAGGATTTGAAAAT 1658
Query 1608 GATTCACAAGAAGTGGTTTAAACCCGAAGAAGCTTCCGCTTTGAGGATCAAAATCTGGAA 1667
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1659 GATTCACAAGAAGTGGTTTAAACCGGAAGAAGCTTCCGCTTTGAGGATCAAAATCTGGAA 1718
Query 1668 CTTACTCGTTGATCTATTCCGCAAGGGTAACCAA---G-------CTGTATAGAACAGTG 1717
| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1719 CATACTCGTTGATCTATTCCGCAAGGGTAACCAAACAGATTAAAGCTGTATAGAACAGTG 1778
Query 1718 TCGAGTTTGGTAACTCTAATTAAGAAATGAAA-GA--GA-A-GTTTTTTGTTAACCGATC 1772
|| |||||||| |||||||||||| ||||||| || || | |||||| |||||| |||
Sbjct 1779 TCAAGTTTGGTCACTCTAATTAAGGAATGAAATGAAAGATACGTTTTT-GTTAACA-ATC 1836
Query 1773 ATTTTGTTCAAGTCCTGTAATATAACTAAGGAGCATGACATAATCATAAGTCAGAACAAA 1832
|||||||||||||||||||||| ||||||||||||||||||||||| | | | ||||
Sbjct 1837 ATTTTGTTCAAGTCCTGTAATA-AACTAAGGAGCATGACATAATCA---G--A-A-CAAA 1888
Query 1833 TCAACAAACCAATAATAACTTATCCGAATAAAA 1865
||||||| ||||||||| |||||||||||||
Sbjct 1889 TCAACAAGGTAATAATAACGTATCCGAATAAAA 1921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92318802255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5