BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471177 Length=755 Score E Sequences producing significant alignments: (Bits) Value AT1G10586.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 992 0.0 AT1G10585.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 643 0.0 > AT1G10586.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:3496928-3499439 REVERSE LENGTH=771 Length=771 Score = 992 bits (537), Expect = 0.0 Identities = 693/766 (90%), Gaps = 20/766 (3%) Strand=Plus/Plus Query 1 GAGAGAATTAAACATAGTAACCTAATAAAGGAGAACAAAAAGAATGGAAAGAGGGAGAGA 60 ||| ||||||||||||||||||||| |||||| || || |||||||||||||| |||||| Sbjct 1 GAGGGAATTAAACATAGTAACCTAAAAAAGGAAAAGAAGAAGAATGGAAAGAGCGAGAGA 60 Query 61 AATAGGAGAAGGAAGCGCATCGTCGTTAAGGGAACAACGAAACCTCAGAGAGAAAGAGCG 120 |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| || Sbjct 61 AATAGGAGAAGGAAGCGCATCGTCATTACGGGAACAACGAAACCTCAGAGAGAAAGAACG 120 Query 121 ACGAATGCGCATGAAACATCTCTTCTCTGCACTCTCTTCTCATGTTTCTCCCACTCGTAG 180 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 121 ACGAATGCGCATGAAACATCTCTTCTCCATACTCTCTTCTCATGTTTCTCCCACTCGTAG 180 Query 181 GTTGCCAGTGCCTCAACTTATAGATCAAGCGGTATCATACATGATCCAATTGAAAGAGAA 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 181 GTTGCCAGTGCCTCAACTTATAGATCAAGCGGTATCATACATGATCCAACTGAAAGAGAA 240 Query 241 GGTAAACTGTTTGAATGAGAAGAAAATGAGTTTGTTAAGAGGAGAAGTCAAAAATCGCTC 300 |||||||| ||||||||||| ||||| ||| ||||| |||||||||||||||||||||| Sbjct 241 GGTAAACTATTTGAATGAGATGAAAAGGAGAATGTTAGGAGGAGAAGTCAAAAATCGCTC 300 Query 301 TGCAGGGTCGTCTCTTCTGCCAAAACTCAGTATTCGTTCACGGGATTCGGTCATAGAAAT 360 || |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 301 TGAAGGGTCGTCTCTTCTGCCAAAACTCAGTATTCGTTCACTGGATTCGATCATAGAAAT 360 Query 361 GAATCTGGTTATGGATCTAAACATGAAAAGAATAATGCTACACAAGCTTGTGAGTGTTTT 420 |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 361 GAATCTGGTTATGGATCTAAACATGAAAGGAGTAATGTTACACAAGCTTGTGAGTGTTTT 420 Query 421 TGAAGAAGAAGGAGCTCAAGTAATGAGTGTTAATCTTCAGAACTTGAATGATAGGACCTT 480 ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 421 TGAAGAAGAAGGAGCTCAAGTGATGAGTGCTAATCTTCAGAACTTGAATGATAGGACCTT 480 Query 481 CTATACAATCATAGCCCAGGCTATTATTTGTAGGATCGGGATTGATCCATCAAGGATAGA 540 ||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| Sbjct 481 TTATACAATCATAGCCCAGGCTATCATATGTCGGATCGGGATTGATCCATCAAGGATAGA 540 Query 541 AAAGAGACTAAGGGATATAATCTCATGATTAATTTTTTGAAGCATTTTTAAATCCCAATT 600 | ||||| |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 541 AGAGAGATTAAGGGATATAATCTCATGATTAATTTTTTGAAGCATTATTGAATCCCAA-- 598 Query 601 AAATCACAAGTCTACGAT-ATTAAAG-AA-TGTGTAATTAGTTCTTTAAACATGAGAGAT 657 | |||||||||| | | ||| || ||||| | |||||||||||||||||| | Sbjct 599 A--TCACAAGTCTTTTCTTAACAAATTAAATGTGT--T-AGTTCTTTAAACATGAGAT-T 652 Query 658 GTTGAGTATTTTAAAGAGTGAATTGGTGTAATAGCCCTATTATTGTTTAA---AATGTC- 713 | ||||||||| |||||||||||||||||||||||||||| |||||||| || | Sbjct 653 AT-GAGTATTTTTAAGAGTGAATTGGTGTAATAGCCCTATTGTTGTTTAAGTTAAAGAGA 711 Query 714 -TGATTAAA-GTAA-AA-ACCATTTCCTCAAGTATATGGACGAAAA 755 |||| ||| || || |||||||||||||||||||| ||||||| Sbjct 712 ATGATCAAATGTCTGAATACCATTTCCTCAAGTATATGAACGAAAA 757 > AT1G10585.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:3493940-3495144 REVERSE LENGTH=761 Length=761 Score = 643 bits (348), Expect = 0.0 Identities = 495/566 (87%), Gaps = 10/566 (2%) Strand=Plus/Plus Query 26 TAAAGGAGAACAAAAAGAATGGAAAGAGGGAGAGAAATAGGAGAAGGAAGCGCATCGTCG 85 |||| || |||||||||||||| |||| ||||||||||||||||||| | |||||||| Sbjct 23 TAAAAGAAAACAAAAAGAATGGGGAGAGCAAGAGAAATAGGAGAAGGAAACTCATCGTCG 82 Query 86 TTAAGGGAACAACGAAACCTCAGAGAGAAAGAGCGACGAATGCGCATGAAACATCTCTTC 145 ||||||||||||||||||||||||||||| || ||| | ||||||||||||||||||||| Sbjct 83 TTAAGGGAACAACGAAACCTCAGAGAGAAGGATCGAAGGATGCGCATGAAACATCTCTTC 142 Query 146 TCTGCACTCTCTTCTCATGTTTCTCCCACTCGTAGGTTGCCAGTGCCTCAACTTATAGAT 205 ||| ||| ||||||||||||||||||||||| | ||| ||||||||||| ||||||||| Sbjct 143 TCTATACTTTCTTCTCATGTTTCTCCCACTCGCAAGTTACCAGTGCCTCACCTTATAGAT 202 Query 206 CAAGCGGTATCATACATGATCCAATTGAAAGAGAAGGTAAACTGTTTGAATGAGAAGAAA 265 |||||| ||||||||||||||||||||||||||| ||||| | |||||| ||||||||| Sbjct 203 CAAGCGACATCATACATGATCCAATTGAAAGAGAATGTAAATTATTTGAAAGAGAAGAAA 262 Query 266 ATGAGTTTGTTA-AGAGGAGAAGTCAAAAATCGCT-CTGCAGGGTCGTCTCTTCTGCCAA 323 | || |||||| | ||||||| || |||| || | | |||||||| |||||| || | Sbjct 263 AGGACATTGTTACA-AGGAGAACTCGGGAATCTCTAC-GAAGGGTCGTTTCTTCTACCCA 320 Query 324 AACTCAGTATTCGTTCACGGGATTCGGTCATAGAAATGAATCTGGTTATGGATCTAAACA 383 |||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| Sbjct 321 AACTCAGTATTCGTTCGCGGGATTCGACCATAGAAATGAATCTGATCATGGATCTAAACA 380 Query 384 TGAAAAGAATAATGCTACACAAGCTTGTGAGTGTTTTTGAAGAAGAAGGAGCTCAAGTAA 443 |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 381 TGAAAAGAGTAATGTTACACGAGCTTGTGAGTATTTTTGAAGAAGAAGGAGCTCAAGTAA 440 Query 444 TGAGTGTTAATCTTCAGAACTTGAATGATAGGACCTTCT-ATACAATCATAGCCCAGGCT 502 |||||| |||||||||||||||||||||||||||| || | |||||||||||||||||| Sbjct 441 TGAGTGCTAATCTTCAGAACTTGAATGATAGGACCA-CTTACACAATCATAGCCCAGGCT 499 Query 503 ATTATTTGTAGGATCGGGATTGATCCATCAAGGATAGAAAAGAGACTAAGGGATATAATC 562 || ||| || |||| || ||||||||||||||||||||| ||||| || || | || ||| Sbjct 500 ATCATTAGTCGGATTGGCATTGATCCATCAAGGATAGAAGAGAGAGTACGGAAAATCATC 559 Query 563 TCATG-AT-TA-ATTTTTTGAAGCAT 585 | ||| || || || ||||||||||| Sbjct 560 T-ATGGATATATATATTTTGAAGCAT 584 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36670927310 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5