BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471177
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10586.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 992 0.0
AT1G10585.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 643 0.0
> AT1G10586.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3496928-3499439 REVERSE LENGTH=771
Length=771
Score = 992 bits (537), Expect = 0.0
Identities = 693/766 (90%), Gaps = 20/766 (3%)
Strand=Plus/Plus
Query 1 GAGAGAATTAAACATAGTAACCTAATAAAGGAGAACAAAAAGAATGGAAAGAGGGAGAGA 60
||| ||||||||||||||||||||| |||||| || || |||||||||||||| ||||||
Sbjct 1 GAGGGAATTAAACATAGTAACCTAAAAAAGGAAAAGAAGAAGAATGGAAAGAGCGAGAGA 60
Query 61 AATAGGAGAAGGAAGCGCATCGTCGTTAAGGGAACAACGAAACCTCAGAGAGAAAGAGCG 120
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 61 AATAGGAGAAGGAAGCGCATCGTCATTACGGGAACAACGAAACCTCAGAGAGAAAGAACG 120
Query 121 ACGAATGCGCATGAAACATCTCTTCTCTGCACTCTCTTCTCATGTTTCTCCCACTCGTAG 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 ACGAATGCGCATGAAACATCTCTTCTCCATACTCTCTTCTCATGTTTCTCCCACTCGTAG 180
Query 181 GTTGCCAGTGCCTCAACTTATAGATCAAGCGGTATCATACATGATCCAATTGAAAGAGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 GTTGCCAGTGCCTCAACTTATAGATCAAGCGGTATCATACATGATCCAACTGAAAGAGAA 240
Query 241 GGTAAACTGTTTGAATGAGAAGAAAATGAGTTTGTTAAGAGGAGAAGTCAAAAATCGCTC 300
|||||||| ||||||||||| ||||| ||| ||||| ||||||||||||||||||||||
Sbjct 241 GGTAAACTATTTGAATGAGATGAAAAGGAGAATGTTAGGAGGAGAAGTCAAAAATCGCTC 300
Query 301 TGCAGGGTCGTCTCTTCTGCCAAAACTCAGTATTCGTTCACGGGATTCGGTCATAGAAAT 360
|| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 301 TGAAGGGTCGTCTCTTCTGCCAAAACTCAGTATTCGTTCACTGGATTCGATCATAGAAAT 360
Query 361 GAATCTGGTTATGGATCTAAACATGAAAAGAATAATGCTACACAAGCTTGTGAGTGTTTT 420
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 361 GAATCTGGTTATGGATCTAAACATGAAAGGAGTAATGTTACACAAGCTTGTGAGTGTTTT 420
Query 421 TGAAGAAGAAGGAGCTCAAGTAATGAGTGTTAATCTTCAGAACTTGAATGATAGGACCTT 480
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 421 TGAAGAAGAAGGAGCTCAAGTGATGAGTGCTAATCTTCAGAACTTGAATGATAGGACCTT 480
Query 481 CTATACAATCATAGCCCAGGCTATTATTTGTAGGATCGGGATTGATCCATCAAGGATAGA 540
||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||
Sbjct 481 TTATACAATCATAGCCCAGGCTATCATATGTCGGATCGGGATTGATCCATCAAGGATAGA 540
Query 541 AAAGAGACTAAGGGATATAATCTCATGATTAATTTTTTGAAGCATTTTTAAATCCCAATT 600
| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 541 AGAGAGATTAAGGGATATAATCTCATGATTAATTTTTTGAAGCATTATTGAATCCCAA-- 598
Query 601 AAATCACAAGTCTACGAT-ATTAAAG-AA-TGTGTAATTAGTTCTTTAAACATGAGAGAT 657
| |||||||||| | | ||| || ||||| | |||||||||||||||||| |
Sbjct 599 A--TCACAAGTCTTTTCTTAACAAATTAAATGTGT--T-AGTTCTTTAAACATGAGAT-T 652
Query 658 GTTGAGTATTTTAAAGAGTGAATTGGTGTAATAGCCCTATTATTGTTTAA---AATGTC- 713
| ||||||||| |||||||||||||||||||||||||||| |||||||| || |
Sbjct 653 AT-GAGTATTTTTAAGAGTGAATTGGTGTAATAGCCCTATTGTTGTTTAAGTTAAAGAGA 711
Query 714 -TGATTAAA-GTAA-AA-ACCATTTCCTCAAGTATATGGACGAAAA 755
|||| ||| || || |||||||||||||||||||| |||||||
Sbjct 712 ATGATCAAATGTCTGAATACCATTTCCTCAAGTATATGAACGAAAA 757
> AT1G10585.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3493940-3495144 REVERSE LENGTH=761
Length=761
Score = 643 bits (348), Expect = 0.0
Identities = 495/566 (87%), Gaps = 10/566 (2%)
Strand=Plus/Plus
Query 26 TAAAGGAGAACAAAAAGAATGGAAAGAGGGAGAGAAATAGGAGAAGGAAGCGCATCGTCG 85
|||| || |||||||||||||| |||| ||||||||||||||||||| | ||||||||
Sbjct 23 TAAAAGAAAACAAAAAGAATGGGGAGAGCAAGAGAAATAGGAGAAGGAAACTCATCGTCG 82
Query 86 TTAAGGGAACAACGAAACCTCAGAGAGAAAGAGCGACGAATGCGCATGAAACATCTCTTC 145
||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||
Sbjct 83 TTAAGGGAACAACGAAACCTCAGAGAGAAGGATCGAAGGATGCGCATGAAACATCTCTTC 142
Query 146 TCTGCACTCTCTTCTCATGTTTCTCCCACTCGTAGGTTGCCAGTGCCTCAACTTATAGAT 205
||| ||| ||||||||||||||||||||||| | ||| ||||||||||| |||||||||
Sbjct 143 TCTATACTTTCTTCTCATGTTTCTCCCACTCGCAAGTTACCAGTGCCTCACCTTATAGAT 202
Query 206 CAAGCGGTATCATACATGATCCAATTGAAAGAGAAGGTAAACTGTTTGAATGAGAAGAAA 265
|||||| ||||||||||||||||||||||||||| ||||| | |||||| |||||||||
Sbjct 203 CAAGCGACATCATACATGATCCAATTGAAAGAGAATGTAAATTATTTGAAAGAGAAGAAA 262
Query 266 ATGAGTTTGTTA-AGAGGAGAAGTCAAAAATCGCT-CTGCAGGGTCGTCTCTTCTGCCAA 323
| || |||||| | ||||||| || |||| || | | |||||||| |||||| || |
Sbjct 263 AGGACATTGTTACA-AGGAGAACTCGGGAATCTCTAC-GAAGGGTCGTTTCTTCTACCCA 320
Query 324 AACTCAGTATTCGTTCACGGGATTCGGTCATAGAAATGAATCTGGTTATGGATCTAAACA 383
|||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||||
Sbjct 321 AACTCAGTATTCGTTCGCGGGATTCGACCATAGAAATGAATCTGATCATGGATCTAAACA 380
Query 384 TGAAAAGAATAATGCTACACAAGCTTGTGAGTGTTTTTGAAGAAGAAGGAGCTCAAGTAA 443
|||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 381 TGAAAAGAGTAATGTTACACGAGCTTGTGAGTATTTTTGAAGAAGAAGGAGCTCAAGTAA 440
Query 444 TGAGTGTTAATCTTCAGAACTTGAATGATAGGACCTTCT-ATACAATCATAGCCCAGGCT 502
|||||| |||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 441 TGAGTGCTAATCTTCAGAACTTGAATGATAGGACCA-CTTACACAATCATAGCCCAGGCT 499
Query 503 ATTATTTGTAGGATCGGGATTGATCCATCAAGGATAGAAAAGAGACTAAGGGATATAATC 562
|| ||| || |||| || ||||||||||||||||||||| ||||| || || | || |||
Sbjct 500 ATCATTAGTCGGATTGGCATTGATCCATCAAGGATAGAAGAGAGAGTACGGAAAATCATC 559
Query 563 TCATG-AT-TA-ATTTTTTGAAGCAT 585
| ||| || || || |||||||||||
Sbjct 560 T-ATGGATATATATATTTTGAAGCAT 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5