BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471179
Length=526
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10588.1 | Symbols: | Gibberellin-regulated family protein ... 734 0.0
AT2G39540.1 | Symbols: | Gibberellin-regulated family protein ... 368 3e-101
> AT1G10588.1 | Symbols: | Gibberellin-regulated family protein
| chr1:3501202-3501904 FORWARD LENGTH=596
Length=596
Score = 734 bits (397), Expect = 0.0
Identities = 489/532 (92%), Gaps = 11/532 (2%)
Strand=Plus/Plus
Query 1 AACCAAAAATGAAAATGCTCGTGGCTGTACAATTCTTCATAATCTCTCTTCTCCTCACAT 60
||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 67 AACCAGAAATGAAGATGCCCGTGGTTGTACAATTCTTCATAATCTCTCTTCTCCTCACAT 126
Query 61 CTTCATTTTTTGTACTTTCAAGCGCTGATTCGTCAGCATGCGGTGGAAAGTGCAATGTGA 120
||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 127 CTTCATTTTATGTACTTTCAAGCGCTGATTCATCAGCATGCGGTGGAAAGTGCAGTGTGA 186
Query 121 GATGCTCAAAGGCAGATCGAACACATGAGGAGTGCCTTGAGGACTGCAATATATGTTGCC 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 187 GATGCTCAAAGGCAGATCGAACACATGAGGAGTGCCTTGAGGACTGCGATATATGTTGCC 246
Query 181 AGCAGTGTAATTGTGTTCCTTCGGGTACTTATGGAAACAAAGATGAATGTCCTTGCTACC 240
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 247 AGAAGTGTAATTGTGTTCCTTCGGGGACTTATGGAAACAAAGATGAATGTCCTTGCTACC 306
Query 241 GTGATATGAAAAACTCCAAAGGCGGATCCAAGTGTCCTTGAATATGCTTTGAAGATCCTC 300
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 307 GTGATATGAAAAACTCCAAAGGCGGATCCAAGTGTCCTTGAACATTCTTTGAAGATCCTC 366
Query 301 ATCACAAACATAACATCTACGTACTATATGTATGAAAAT--CA-C-ATATATGTTTGATG 356
|||||| ||||| |||||||||||||||||||| |||| || | ||||||||||||||
Sbjct 367 ATCACATACATATTATCTACGTACTATATGTATGGAAATTACATCTATATATGTTTGATG 426
Query 357 TATGAAAAAA-TTCCATGAGCTTATTGAAAATTGTGTTTTCTTTAATTCGATTCCTAAAC 415
||||||| || ||| |||||||| |||||||| |||| |||| ||| ||||||||||||
Sbjct 427 TATGAAATAAGTTCTGTGAGCTTAATGAAAATTTTGTTATCTTCAATCCGATTCCTAAAC 486
Query 416 AC-TAAAGAATAAATCATGTCAAGGTTTATATTTCTCAGCTTCAATTTAACTAAAAGCAA 474
|| | |||||||||||||||| |||||||||||||||||||||||||| |||||| | ||
Sbjct 487 ACATCAAGAATAAATCATGTCGAGGTTTATATTTCTCAGCTTCAATTTCACTAAACG-AA 545
Query 475 CAACTTGGGATACTATATATGATGGGATGCACATTTGAGAATTTACTCTCTC 526
||||||||||||||| ||||| ||||| | ||||||||||||||||||
Sbjct 546 TAACTTGGGATACTAT----GATGGAATGCAGAATTGAGAATTTACTCTCTC 593
> AT2G39540.1 | Symbols: | Gibberellin-regulated family protein
| chr2:16500866-16501241 FORWARD LENGTH=264
Length=264
Score = 368 bits (199), Expect = 3e-101
Identities = 245/266 (92%), Gaps = 8/266 (3%)
Strand=Plus/Plus
Query 17 GCTCGTGGCTGTACAATTCTTCATAATCTCTCTTCTCCTCACATCTTCATTTTTTGTACT 76
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 6 GCTCGTGGTTGTACAATTCTTCATAATCTCTCTTCTCCTCACATCTTCATTTTCTGTACT 65
Query 77 TTCAAGCGCTGATTCGTCAGCATGCGGTGGAAAGTGCAATGTGAGATGCTCAAAGGCA-G 135
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 66 TTCAAGTGCTGATTCGT---CATGCGGTGGAAAGTGCAATGTGAGATGCTCAAAGGCAGG 122
Query 136 ATCGAACACATGAGGAGTGCCTTGAGGACTGCAATATATGTTGCCAGCAGTGTAATTGTG 195
| | | |||||| || ||||| || |||||||||||||||||||| ||||||||||||
Sbjct 123 A-C--A-ACATGAAGAATGCCTCAAGTACTGCAATATATGTTGCCAGAAGTGTAATTGTG 178
Query 196 TTCCTTCGGGTACTTATGGAAACAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACT 255
|||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTCCTTCGGGAACTTTTGGACACAAAGATGAATGTCCTTGCTACCGTGATATGAAAAACT 238
Query 256 CCAAAGGCGGATCCAAGTGTCCTTGA 281
||||||| ||||||||||||||||||
Sbjct 239 CCAAAGGTGGATCCAAGTGTCCTTGA 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25167307647
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5