BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471184
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2333 0.0
> AT1G10610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3506186-3509006 FORWARD LENGTH=1857
Length=1857
Score = 2333 bits (1263), Expect = 0.0
Identities = 1461/1553 (94%), Gaps = 27/1553 (2%)
Strand=Plus/Plus
Query 198 gagtgagagtgagagta-agagagagagagatgatgatgatgagaggtggtgagagagtg 256
||||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 249 GAGTGAGAGAGAGAG-AGAGAGAGAGTGAGATGATGATGATGAGAGGTGGTGAGAGAGTG 307
Query 257 aAGGAGTTTCTTCGACCCTTTGTCGATTCCAGAACTTGGGACTTATGCGTTATCTGGAAA 316
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 308 AAGGAGTTTCTTCGACCCTTTGTCGATTCCAGAACTTGGGACTTATGTGTTATCTGGAAA 367
Query 317 CTCGGTGATGATCCTTCTAGGTTTATTGAATGGGTAGGATGCTGCTGCAGTGGTTGTTAT 376
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 368 CTCGGTGATGATCCTTCTAGGTTTATTGAATGGGTGGGATGCTGCTGCAGTGGTTGTTAT 427
Query 377 ATTGATAAGAACATTAAGCTTGAAAACTCAGAAGAA-GA--AACTGGGAGAAGAAACAAG 433
||||||||||| || ||||||||||||||||||||| || ||||||||||| ||| |||
Sbjct 428 ATTGATAAGAATATAAAGCTTGAAAACTCAGAAGAAGGAGGAACTGGGAGAAAAAAGAAG 487
Query 434 GCTTCTTTCTGTAGAGATGAACACAACAAGCATCGTATAAGAACCCTAGCTTGTGAAGCT 493
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 488 GCTTCTTTCTGTAGAGATGACCACAACAAGCATCGTATAAGAACCTTAGCTTGTGAAGCG 547
Query 494 CTTTCTCATTTTCCTCTCTTCATGCCTCTCTATCCCGGGATTCATGGAGAAGTAGTGATG 553
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CTTTCTCGTTTTCCTCTCTTCATGCCTCTCTATCCCGGGATTCATGGAGAAGTAGTGATG 607
Query 554 TCAAAATCTCCAAAGTGGTTGGTTAATTCAGGATCTAAAATGGATATGTTCAGCACTCGG 613
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 608 TCAAAATCTCCAAAGTGGTTGGTTAATTCAGGATCTAAAATGGAAATGTTCAGCACTCGT 667
Query 614 GTTCTTGTTCCTGTGAGTGATGGTCTCGTTGAGCTGTTCTCCTTT-GATATGAAACCGTT 672
||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct 668 GTTCTTGTTCCTGTGAGTGATGGTCTCGTTGAGCTGTTC-GCTTTCGATATGAGACCGTT 726
Query 673 TGATGAAAGCATGGTGCATTTGATCATGTCGCGTTGTACCACCTTCTTTGAACCATTACC 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 727 TGATGAAAGCATGGTGCATTTGATCATGTCGCGTTGTACCACCTTCTTTGAACCATTCCC 786
Query 733 TGAGCAAAGGCTGCCA-TTCAGGATCATTCCCCGAGCAGAGGAATCTATGAGTAGCGGTG 791
||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 TGAACAAAGGCTG-CAGTTCAGGATCATTCCCCGAGCAGAGGAATCTATGAGTAGCGGTG 845
Query 792 TGAATCTCAGCTTTGAGGGTGGCGGATCATCAAGTGTTTCCAATCCCTCCAGTGAAACTC 851
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TGAATCTCAGCGTTGAGGGCGGCGGATCATCAAGTGTTTCCAATCCCTCCAGTGAAACTC 905
Query 852 AGAATCTTTTCGGCAGTTACCCGAATGCTCGTTGTGTAGAAATTCTCAGGGAGGAACAAG 911
||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 906 AGAATCTTTTCGGCAATTACCCGAATGCTAGTTGTGTGGAAATTCTCAGGGAGGAACAAA 965
Query 912 CGCCATGTATGGTAATGAACAAGGAAAAGGATGGTT-TGGTGCAAAATGCCAACGATTCC 970
| || ||| || |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 966 CACCGTGTTTGATAATGAACAAGGAAAAGGAT-GTTGTGGTGCAAAATGCCAACGATTCC 1024
Query 971 AAGGCTAATAAG-AG--GCTTCCTGCGGAAAACTTCAAATCAAAGAACCTTCATTCAGAG 1027
|| ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1025 AAAGCTAATAAGAAGCTGCTTCCTACGGAAAACTTCAAATCAAAGAACCTTCATTCAGAG 1084
Query 1028 AGGAAAAGAAGAGATAAAATTAATCAGGCCATGTATGGTCTAAGAGCAGTAGTCCCTAAA 1087
|||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1085 AGGAAAAGAAGAGAGAGAATTAATCAGGCCATGTATGGTCTAAGAGCCGTAGTCCCTAAA 1144
Query 1088 ATCACAAAGTTGAACAAAATTGGAATTTTTAGTGATGCGGTTGATTACATCAATGAACTG 1147
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1145 ATCACAAAGTTGAACAAAATTGGAATTTTCAGTGATGCTGTTGATTACATCAATGAACTG 1204
Query 1148 CTGGCGGAGAAGCAGAAACTTGAAGATGAGCTTAAAGGAATCGACGAGATGGAATGCAAA 1207
|| | ||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1205 CTAGTGGAGAAGCAGAAACTTGAAGATGAGCTTAAAGGAATCAATGAGATGGAATGCAAA 1264
Query 1208 GAAATTGCTGCAGAGGAACAATCTGCAATAGCTGATCCAGGAGCTGAAAAG-GTTTCCTC 1266
||||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||
Sbjct 1265 GAAATCGCTGCAGAGGAACAATCTGCAATAGCTGATCCAGAAGCTG-AAAGAGTTTCCTC 1323
Query 1267 GAAAATCAACAAGAAAGTGAAGAAAAACGAGGTGAATCTTGAAGTCCACGAGATTGGTGA 1326
|||| |||||||| ||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1324 TAAAAGCAACAAGAGAGTGAAGAAAAACGAGGTGAAAATTGAAGTCCACGAGACTGGTGA 1383
Query 1327 GCGAGATTTCTTGATTCGGGTTGTGCAGGAACATAAACAAGATGGATTCAAGAGGTTGAT 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1384 GCGAGATTTCTTGATTCGGGTTGTGCAGGAACATAAACAAGATGGATTCAAGAGGTTGAT 1443
Query 1387 AGAAGCTGTAGATTTATGTGAACTTGAGATCATCGACGTTAATTTCACCAGACTTGATCT 1446
||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1444 AGAAGCTGTAGATTTATGTGAACTTGAGATCATTGACGTCAATTTCACCAGACTCGATCT 1503
Query 1447 CACAGTCCTGACCATTCTCAATGTCAAGGCGAACAAAGACGGGATTACATCTGGAAT-TC 1505
||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct 1504 CACAGTCATGACCGTTCTCAATGTCAAGGCGAACAAAGACGGGATTGCATGTGGAATAT- 1562
Query 1506 TGAAAGATTTGCTGCTCAAGATGATTATAACTTCAATATGAAAG-TCGGTAAAACAGAGT 1564
||| |||||| |||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1563 TGAGAGATTTACTGCTCAAGATGATGATAACTTCAATATGAAAACTCAGTAAAACAGAGT 1622
Query 1565 ACATAACC-CaaaaaaaaaGGTCAAATGTTTTGTTTGCTTCAGTCACAAGTTACTACTAG 1623
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1623 ACATAACCTCAAAA-----GGTCAAATGTTTTGTTTGCTTCAGTCACAAGTTACTGCTAG 1677
Query 1624 AGATATGATTTCTCACAAGCTTTTTGGTGACAAATTTACATGTT-GAAACTATACATTCT 1682
|||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct 1678 AGATATGATTTCTCACAAGCTTTTAGGTGACAG-TTTACATGTTTGAAACTATACATTCT 1736
Query 1683 TCTGGTTTATCATCGGATTTTCATTAAGATCTTTCACAAATATAATTCTAAAG 1735
|||||||| |||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1737 TCTGGTTTGTCATTGGGTTTTCATTAAGATCTTTCACAAATATAATTCTAAAG 1789
Score = 324 bits (175), Expect = 2e-87
Identities = 249/280 (89%), Gaps = 23/280 (8%)
Strand=Plus/Plus
Query 1 CTCTGGGTTTTAATTCAAAAAGTGGAGTTGGTTACCATTGTCTTGTACGATCGTATATTC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTGGGTTTTAATTCAAAAAGTGAAGTTGGTTACCATTGTCTTGTACGATCGTATATTC 60
Query 61 CCGATATGATTTGTTTTGACAGAGCAACTGCTTTGTATATAT--GCCAAA-A-CA-tctc 115
|||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||
Sbjct 61 CCGATATGATTTGTTTTGACAGAGCAACTGCTTTGTATATATATGCCAAATATCTCTCTC 120
Query 116 tctctc--tc-CT--T-GCATCAATTTATAAGTAAGACCAAAAGAGATCAC-AAAGATTC 168
|||||| || || | |||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 121 TCTCTCCCTCTCTCCTTGCATCAATTTATAAGTAAGACCAAAAGAGATCACCAAA-ACTC 179
Query 169 AGGCTTTTTGTTTGGCTTTTCTTATTCTtgagtgagag--tgagagtaagagagagagag 226
|||||| ||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 180 AGGCTTCTTGTTTGGCTTTTCTTATTGTTGATTGAGAGAGTGAGAGTAAGAGAGAGAGAG 239
Query 227 atgatgatgatgagaggtg-gtgagagagtga-AG-GAGT 263
| || || || ||||| || | ||||||| || || ||||
Sbjct 240 A-GA-GA-GA-GAGAG-TGAGAGAGAGAGAGAGAGAGAGT 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87148146120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5