BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471186
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10640.1 | Symbols: | Pectin lyase-like superfamily protein... 1999 0.0
> AT1G10640.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:3515365-3517888 REVERSE LENGTH=1793
Length=1793
Score = 1999 bits (1082), Expect = 0.0
Identities = 1234/1307 (94%), Gaps = 12/1307 (1%)
Strand=Plus/Plus
Query 1 TGAAGCGGCTTGGGCAGCGGCTTGCAAAATCGAAGCATCGA-TGATGCTTGTACCGCCTG 59
|||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct 495 TGAAGCGGCTTGGGTAGCAGCTTGCAAAATCGAAGCATC-AGTGATGCTTGTACCGCCTG 553
Query 60 AATACACTTACCTTGTTGGACCGATCTCATTCTCTGGTCCTTATTGTCAAGCTAACATTG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 AATACACTTACCTTGTTGGACCGATCTCATTCTCTGGTCCTTATTGTCAAGCTAACATTG 613
Query 120 TGTTTCAGCTTGATGGTACAATCATAGCTCCAACGGATTCAAAGACATGGGGAAAAGGGT 179
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 614 TGTTCCAGCTTGATGGTACGATTATAGCTCCAACGGATTCAAAGACATGGGGAAAAGGGT 673
Query 180 TAATGTGGTGGATTGATTTCACAAAGCTGAAAGGAATTAAAGTGCAAGGGAAAGGTGTGA 239
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 674 TAATGTGGTGGATTGATTTTACAAAGCTGAAAGGAATTAAAGTACAAGGGAAAGGTGTTA 733
Query 240 TTGATGGAAGAGGCTCTGGTTGGTGGCAACAAGATGATCCTTTCAGTGATGGTGAAACCA 299
||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||
Sbjct 734 TTGATGGAAGAGGCTCTGGTTGGTGGCAACAAGATTCTCCTTTCATTGATAGTGATACCA 793
Query 300 AACTCATCATCCCTTTGAACAATTCTGTTCACCAAAACCCTCCAATGCCGATAAGAAGTG 359
|||||||| |||||||||||||||||| | ||||||||||||| |||||||| |||||||
Sbjct 794 AACTCATCGTCCCTTTGAACAATTCTGCTAACCAAAACCCTCCTATGCCGATCAGAAGTG 853
Query 360 AGCTAGATGGGAGAATGCCAAGTACTAAACCAACGGCATTGAGATTCTCCGGGAGTTTAG 419
|||| |||| |||||||||||| | |||||||||||||||||||||||| |||||||| |
Sbjct 854 AGCTTGATGAGAGAATGCCAAGCATTAAACCAACGGCATTGAGATTCTCTGGGAGTTTTG 913
Query 420 GCGTGGAAGTGACGGGTATAACGATCCAAAACAGTCCTCAGTGTCATCTCAAATTCGACG 479
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 914 GTGTGGAAGTGACGGGTATAACGATACAAAACAGTCCTCAGTGTCACCTCAAATTCGACG 973
Query 480 ACTGCTTAGGGGTTGTGGTGCATGACATAGCCGTTTCTTCACCTGGTGACAGTCCAAACA 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 ACTGCGTAGGGGTTGTGGTGCATGACATAGCCGTTTCTTCACCTGGTGACAGTCCAAACA 1033
Query 540 CTGATGGAATCCACCTCCAGAACACCAGAGATGTCCTCATTCACAGCACTACTCTTGCTT 599
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 1034 CTGATGGAATTCACCTCCAGAACACCAAAGATGTCCTCATTCACAGCACTACTCTCGCTT 1093
Query 600 GCGGAGATGATTGTATCTCGATCCAAACGGGTTGCTCGAATGTGTATGTGCACAATGTGA 659
|||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1094 GCGGAGATGACTGTATCTCGATCCAAACGGGTTGCTCGAACGTGTTTGTGCACAATGTGA 1153
Query 660 ACTGTGGACCGGGGCACGGGATCAGCATTGGTAGTCTCGGCAAAGAAGGCACAAAAGCCT 719
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1154 ACTGTGGACCGGGTCACGGGATCAGCATTGGTAGTCTCGGCAAAGAGGGTACAAAAGCCT 1213
Query 720 GCGTCTCCAACATAACAGTGCGAGACGTAGCTATGCACAACACAATGACAGGTGTCAGGA 779
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 1214 GCGTCTCGAACATAACAGTACGAGACGTAGCTATGCACAACACAATGACAGGTGTCCGAA 1273
Query 780 TCAAGACATGGCAAGGAGGAGTAGGATCAGTGAAAGGGATAATCTTCTCAAACATTCAGC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 TCAAGACATGGCAAGGAGGAGTAGGATCAGTGAAAGGGATAATCTTCTCAAACATTCAGC 1333
Query 840 TCAACGAAGTCCAGATTCCAATAATGATAGACCAATTCTACTGTGACCACAGCAAATGCA 899
||||| |||| || |||||||||| |||| ||||||||||||||||||| ||||||||||
Sbjct 1334 TCAACCAAGTACAAATTCCAATAACGATAAACCAATTCTACTGTGACCATAGCAAATGCA 1393
Query 900 AGAACCAGACATCAGCAGTTGCAGTGGAAGGAGTGACTTACGAGAGGATAAAAGGAACCT 959
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1394 AGAACCAAACATCAGCAGTAGCAGTGGAAGGAGTGACTTACGAGAGGATAAAAGGAACTT 1453
Query 960 ACACCGTGAAACCGGTGCATTTCGCTTGTAGCGATAACTTCCCGTGTGTAGATGTGCAGT 1019
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 ATACCGTGAAACCGGTGCATTTCGCTTGTAGCGATAACTTCCCGTGTGTAGATGTGCAGT 1513
Query 1020 TATCATCGATAGAGCTTAAACCGGTTCAAGAAAAGTATCGAATGTCTGATGCTTATTGTT 1079
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1514 TATCGTCGATAGAGCTTAAACCGGTTCAAGAAAAGTATCGAATGTATGATGCTTATTGCT 1573
Query 1080 GGCAGACATTTGGTGAGCTCAACACTCCTACTCTTCCTCCCATTGATTGTTTGCAGATTG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1574 GGCAGACATTTGGTGAGCTCAACACTCCTACTCTTCCTCCCATTGATTGTTTGAAGATTG 1633
Query 1140 GGAAGCCCCC-ACGAAACAAAGTTCAGTCCGATCACGATGTGTGTTGATGGATTC--CGC 1196
|||||||||| | ||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 1634 GGAAGCCCCCGA-GAAACAAAGTTCAGTCCGATCACGATGTGTGTTAACGGATTTTTCGC 1692
Query 1197 AAGTAAAAAATATGTAGATTAATGTATATCATCTTTCTTTAGCCTATAAAACCTACTACT 1256
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1693 AAGTAAAAAG-ATGTAGATTCATGTATATCATCTTTCTTTAGCCTATAAAACCTACT--T 1749
Query 1257 CTTGATACGAATTTACGGCTTAGATATTAAAAATGATGTCTCTTGCT 1303
| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1750 C---ATACGAATTTACGGTTTAGATATTAAAAATGATGTCTCTTGCT 1793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64106095965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5