BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471189
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10657.1 | Symbols: | Plant protein 1589 of unknown functio... 527 6e-149
> AT1G10657.1 | Symbols: | Plant protein 1589 of unknown function
| chr1:3530467-3531821 FORWARD LENGTH=862
Length=862
Score = 527 bits (285), Expect = 6e-149
Identities = 345/372 (93%), Gaps = 11/372 (3%)
Strand=Plus/Plus
Query 1 GTGTATCTATATTTAGAAGCTTCCTAATTTTGTC-ACAGAAAATATCTTCATGTTTTGTT 59
|||||| ||||||||||||||||||| ||||||| | ||||||||||||| |||||||||
Sbjct 3 GTGTATTTATATTTAGAAGCTTCCTAGTTTTGTCTA-AGAAAATATCTTCTTGTTTTGTT 61
Query 60 CCTTTC--CGCTATAACTCATAATTCACTTCCAAATTTCTTGGATTTGTGCCCCAAATCA 117
|||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||
Sbjct 62 CCTTTCAGCGCTATAACTCATAATTCTCTTCCAAAGTTCTTGGATTTGTTCCCCAAATCA 121
Query 118 TCTGGAGATCTAACaagaagaagaag-a-a-cgaagatcaaaggagaaagaagaaga-a- 172
|||||||||||| |||||||||||| | | |||||||||||||| || |||||||| |
Sbjct 122 ACTGGAGATCTAAGAAGAAGAAGAAGAAGAGCGAAGATCAAAGGATAAGGAAGAAGAGAG 181
Query 173 gaaaaTGTGTACTCAT-CATGATGAATCACAACACAACAATCTCCCTTGTCTCCGTTGCC 231
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 182 GAAAATGTGTACTCATGC-TGATGAATCACAACACAACAATCTCCCTTGTCTCCATTGCC 240
Query 232 AACCACATTCTTACATTCGCATGGTTCAACATATGATTGAGAGATGCATTCTACTCCGTA 291
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 AACCACATTCTTACATTCGCATGGTTCAACATATGATAGAGAGATGCATTCTACTCCGTA 300
Query 292 TGACTCGTGACGAATGCGTCAAGGCGTTAGACCATCACGCAAGCATTCTACCACTCGTTA 351
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TGACGCGGGACGAATGCGTCAAGGCGTTAGACCACCACGCAAGCATTCTACCACTCGTTA 360
Query 352 CGCTCACTGTTT 363
| ||||||||||
Sbjct 361 CACTCACTGTTT 372
Score = 375 bits (203), Expect = 2e-103
Identities = 327/381 (86%), Gaps = 31/381 (8%)
Strand=Plus/Plus
Query 360 GTTTGGAGAGGACTTCAAAGAGAAAATAAGGACTTCTTTGAAACGTATGGGCATTTCGTC 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 441 GTTTGGAGAGGACTTCAAAGAGAAAACAAGGACTTCTTTGAAACGTATGGGCATTTCGTC 500
Query 420 TCTCCTAGGCCCTTCTTAAGTGGATATGTCCGAAGATCGCCGAGGTTTGCAAAAAGAATG 479
|||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||
Sbjct 501 TCTCCTAGGCCCTTCTTAAGCGGATATGTTCGAAGATCGCCGAGGTTTGCGAAAAGGATA 560
Query 480 TAATGAAGATCACTTGGTTTAGGCTTGTAGCTGGATATATAGGAGAAAAAGCTTGAACTT 539
||||||||| | |||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 561 TAATGAAGA-C--TTGGTTTAGGCTCGTAGCTAGATATATAGGAGAAAAAGCTTGAACTT 617
Query 540 TATATATAC-TA--C----GTATTCC-TA-----A-GATGAAATACTCATGCTC-TTATA 584
||||||||| || | ||||| | || | ||||||||||||||||| ||||
Sbjct 618 TATATATACCTAGGCATATGTATTACATATTCCTATGATGAAATACTCATGCTTATTATC 677
Query 585 TGTGGTCCTTTTGAACTT-TAAGGTTCGACTATAAGATTAAGCGGGA-AA-ACGGTATTT 641
|||||||||||||| | |||||||| |||||||||||||| | | || | | ||||
Sbjct 678 TGTGGTCCTTTTGATGTCATAAGGTTCCCCTATAAGATTAAGCAG-ATAAGATTG-ATTT 735
Query 642 TCGTGTGTAAACTAGTTTTAAGGTTGCTTATTTAGAT-----G---CAGTCTATTTATCG 693
||||||||||||||||||||||||||||||||||||| | |||||| ||||| |
Sbjct 736 TCGTGTGTAAACTAGTTTTAAGGTTGCTTATTTAGATAATTAGATGCAGTCTGTTTATTG 795
Query 694 ATAACCCTGGATTATAAGAGG 714
| |||||| ||||||||||||
Sbjct 796 AAAACCCTCGATTATAAGAGG 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5