BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471195
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10670.3 | Symbols: ACLA-1 | ATP-citrate lyase A-1 | chr1:35... 2154 0.0
AT1G60810.1 | Symbols: ACLA-2 | ATP-citrate lyase A-2 | chr1:22... 1605 0.0
> AT1G10670.3 | Symbols: ACLA-1 | ATP-citrate lyase A-1 | chr1:3535383-3538281
FORWARD LENGTH=1724
Length=1724
Score = 2154 bits (1166), Expect = 0.0
Identities = 1306/1371 (95%), Gaps = 19/1371 (1%)
Strand=Plus/Plus
Query 296 GATTAATGAAACAACTGATCTAAATGAGGTAGTTGAAAAGGAGCCTTGGCTCTCGTCCGA 355
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 368 GATTAATGAAACAACTGATCTAAATGAGCTAGTTGAAAAGGAACCTTGGCTCTCGTCTGA 427
Query 356 GAAGCTGGTGGTGAAACCTGACATGTTGTTTGGAAAGCGTGGCAAGAGTGGTTTGGTTGC 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GAAGCTGGTGGTGAAACCTGACATGTTGTTTGGAAAGCGTGGCAAGAGTGGTTTGGTTGC 487
Query 416 CTTGAAATTAGATTTTGCTGATGTTGCCACTTTTGTGAAAGACCGTTTGGGCAAAGAGGT 475
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 488 CTTGAAATTAGATTTTGCTGATGTTGCCACTTTTGTTAAAGAACGTTTGGGAAAAGAGGT 547
Query 476 AGAGATGAGTGGATGCAAAGGACCCATAACAACATTCATAGTTGAACCATTTGTTCCACA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 AGAGATGAGTGGATGCAAAGGACCCATAACAACATTCATAGTTGAACCATTTGTTCCACA 607
Query 536 CAATGAAGAGTTTTATCTTAATGTTGTCTCGGATCGGCTTGGGTGCAGCATAAGCTTTTC 595
|||||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 608 CAATGAGGAGTATTATCTCAATGTTGTCTCGGATCGGCTTGGTTGCAGCATAAGCTTTTC 667
Query 596 AGAGTGCGGAGGAATTGAGATCGAGGAGAACTGGGACAAGGTCAAGACTATATTTTTACC 655
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 668 TGAGTGTGGAGGAATTGAGATCGAGGAGAACTGGGACAAGGTCAAGACAATATTTTTACC 727
Query 656 AACAGGTGCTTCCCTGACACCTGAAATATGTGCACCTCTTGTGGCAACTCTTCCCTTAGA 715
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 728 AACAGGTGCTTCCCTGACACCTGAAATATGTGCACCTCTTGTCGCAACTCTTCCCTTAGA 787
Query 716 GATCAAAGCTCAAATTGAAGAATTTATCAAAGTCATTTTCACCCTATTCCAAGATCTTGA 775
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 GATCAAAGCTGAAATTGAAGAATTTATCAAAGTCATTTTCACCCTATTCCAAGATCTTGA 847
Query 776 TTTCACTTTCTTGGAGATGAATCCTTTCACTCTAGTTGATGGAAGTCCTTATCCTCTGGA 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TTTCACTTTCTTGGAGATGAATCCTTTCACTCTAGTTGATGGAAGTCCTTATCCTCTGGA 907
Query 836 TATGAGGGGTGAGCTTGATGATACTGCCGCCTTCAAAAACTTTAAAAAATGGGGCGACAT 895
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 908 TATGAGGGGTGAGCTTGATGATACTGCTGCCTTCAAAAACTTTAAAAAATGGGGCGACAT 967
Query 896 TGAATTTCCTATGCCATTTGGAAGAGTAATGAGTGCC-ACAGAAAGCTTTATCCATGGAC 954
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 968 TGAATTTCCTCTGCCATTTGGAAGAGTAATGAGT-CCTACAGAAAGCTTTATCCACGGAC 1026
Query 955 TGGATGAGAAGACAAGTGCGTCTTTGAAGTTTACCGTTCTGAACCCCAAGGGACGGATTT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 TGGATGAGAAGACAAGTGCGTCTTTGAAGTTTACCGTTCTGAACCCCAAGGGACGGATTT 1086
Query 1015 GGACAATGGTAGCTGGTGGAGGAGCAAGTGTCATCTATGCGGATACTGTTGGAGATCTCG 1074
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1087 GGACAATGGTAGCTGGTGGAGGAGCAAGTGTCATCTATGCGGATACGGTTGGAGATCTCG 1146
Query 1075 GGTATGCATCTGAACTTGGCAACTATGCTGAATATAGTGGAGCACCCAAAGAAGATGAGG 1134
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1147 GGTATGCATCTGAACTTGGCAACTATGCTGAATACAGTGGAGCACCCAAAGAAGATGAGG 1206
Query 1135 TTTTGCAGTACGCCAGAGTCGTTATTGACTGTGCTACAGCAAACCCTGATGGAAAAAGCA 1194
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1207 TTTTGCAGTACGCCAGAGTCGTTATTGATTGTGCTACAGCAAACCCGGATGGAAAAAGCA 1266
Query 1195 GAGCTCTTGTGATTGGGGGTGGAATTGCCAACTTCACTGATGTTGCTGCTACTTTCAATG 1254
|||| ||||| || || || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1267 GAGCCCTTGTCATCGGAGGCGGAATTGCCAACTTCACTGACGTTGCTGCTACTTTCAATG 1326
Query 1255 GCATAATCCGCGCTCTTAAAGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATTT 1314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1327 GCATAATCCGCGCTCTTAAAGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATAT 1386
Query 1315 TTGTGAGGAGGGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGCGAGCCCTTGGAG 1374
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 TTGTGAGGAGAGGAGGACCAAACTACCAAAAGGGACTTGCTAAAATGCGAGCCCTTGGAG 1446
Query 1375 ATGAAATCGGTGTCCCCATCGAGGTCTATGGTCCAGAAGCAACCATGACAGGTATCTGCA 1434
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1447 ATGATATCGGTGTCCCCATCGAGGTCTATGGCCCAGAAGCAACCATGACAGGTATCTGCA 1506
Query 1435 AGGAGGCCATCCAGTACATCACAGCAGCAGCATAAGCTTCTCTCAGTACCTTAAGATCCA 1494
||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1507 AGGAGGCAATCCAGTACATCACAGCAGCAGCATAAGCTTCTCTCAGTACCTT-----C-- 1559
Query 1495 TTTCTATGACAAAAACT--GTCGGTGTTTTAGAGCCTCTATCTACTTTGTGTTCAAGATT 1552
| ||||| |||||| ||| |||||||||||||| ||| |||| || ||| ||||||
Sbjct 1560 T----ATGACCAAAACTTTGTCTGTGTTTTAGAGCCTTTATTTACTGTG-GTT-AAGATT 1613
Query 1553 ACTCAAGCTATAAGCTACTTGCAATTTCTTGAAAACTTCTGT-GATTCGATTCTCTTTCC 1611
|||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1614 ACTCAAGCTATAAGATACTTGCAATTTCTTGAAAACTTCTGTTG-TTCGATTCTCTTTCC 1672
Query 1612 CCTAAAGTTCTCCTCAGATTCAATAAATAATCGTTAAATTCTTTTGCCCTC 1662
||||| ||| || ||||||||||||||||||||||| || |||| |||||
Sbjct 1673 CCTAACGTTTTCTTCAGATTCAATAAATAATCGTTACTTTTTTTTCCCCTC 1723
Score = 353 bits (191), Expect = 3e-96
Identities = 221/234 (94%), Gaps = 7/234 (3%)
Strand=Plus/Plus
Query 64 TTTGTAAGTTGCAACTATAAATGGTAAATTCGGTCCTTTAAGATTAGAAGGCAAAGAAGA 123
|||| ||||||||||||||||||||||||||||||| |||||||||||| | | || |
Sbjct 81 TTTGGAAGTTGCAACTATAAATGGTAAATTCGGTCC-TTAAGATTAGAA-G---ACAA-A 134
Query 124 GAAGAGTCGTGTTGGTGAGCTAACTACCCAACCTGTGAAGCTA-CACCATTCTCTCTCAA 182
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 135 GAAGAGTCGTGTTGGTGAGCTAACTACCCAACCTGTGAAGCTACCCCCATTCTCTCTCAA 194
Query 183 CGTTTTCGTTTTGAAATGGCGAGGAAGAAGATTAGAGAGTATGACTCAAAGAGATTGGTG 242
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 195 CGTTTTCGTTTTGAAATGGCGAGGAAGAAGATCAGAGAGTATGACTCAAAGAGGTTGGTG 254
Query 243 AAGGAACACTTCAAAAGGCTTTCTGGCAAAGAGCTTCCTATCAGATCCGTTCAG 296
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 AAGGAACATTTCAAAAGGCTTTCTGGCAAAGAGCTTCCTATCAGATCCGTTCAG 308
> AT1G60810.1 | Symbols: ACLA-2 | ATP-citrate lyase A-2 | chr1:22388527-22391165
REVERSE LENGTH=1488
Length=1488
Score = 1605 bits (869), Expect = 0.0
Identities = 1147/1282 (89%), Gaps = 16/1282 (1%)
Strand=Plus/Plus
Query 198 ATGGCGAGGAAGAAGATTAGAGAGTATGACTCAAAGAGATTGGTGAAGGAACACTTCAAA 257
||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 53 ATGGCTCGGAAGAAGATCAGAGAGTATGACTCAAAGAGACTGGTGAAAGAACACTTCAAA 112
Query 258 AGGCTTTCTGG-CAAAGAGCTT-CCTATCAGATCCGTTCAGATTAATGAAACA-ACTGAT 314
|| || ||||| | |||| || ||||||||||||||||||||||| || | ||||||
Sbjct 113 AGACTCTCTGGTC-AAGA-ATTGCCTATCAGATCCGTTCAGATTAA-CCAAGAGACTGAT 169
Query 315 CTAAATGAGGTAGTTGAAAAG-GAGCCTTGGCTCTCGTCCGAGAAGCTGGTGGTGAAACC 373
||||||||| |||| | | || |||||||||||||| || |||||||| |||||||||||
Sbjct 170 CTAAATGAGCTAGTAG-AGAGAGAGCCTTGGCTCTCATCTGAGAAGCTTGTGGTGAAACC 228
Query 374 TGACATGTTGTTTGGAAAGCGTGGCAAGAGTGGTTTGGTTGCCTTGAAATTAGATTTTGC 433
||| |||||||| |||||||||||||| || ||||||||||| ||||| |||||||| ||
Sbjct 229 TGATATGTTGTTCGGAAAGCGTGGCAAAAGCGGTTTGGTTGCATTGAACTTAGATTTCGC 288
Query 434 TGATGTTGCCACTTTTGTGAAAGACCGTTTGGGCAAAGAGGTAGAGATGAGTGGATGCAA 493
||||||||| ||||| |||||||| || || |||||||||||||||||||||||||||||
Sbjct 289 TGATGTTGCAACTTTCGTGAAAGAACGCTTAGGCAAAGAGGTAGAGATGAGTGGATGCAA 348
Query 494 AGGACCCATAACAACATTCATAGTTGAACCATTTGTTCCACACAATGAAGAGTTTTATCT 553
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 349 AGGACCCATAACAACATTCATTGTTGAACCATTTGTCCCACACAATGAAGAGTTCTATCT 408
Query 554 TAATGTTGTCTCGGATCGGCTTGGGTGCAGCATAAGCTTTTCAGAGTGCGGAGGAATTGA 613
|||| ||||||| ||| | ||||| |||||||| |||||||| ||||| |||||||||||
Sbjct 409 TAATATTGTCTCTGATAGACTTGGCTGCAGCATTAGCTTTTCGGAGTGTGGAGGAATTGA 468
Query 614 GATCGAGGAGAACTGGGACAAGGTCAAGACTATATTTTTACCAACAGGTGCTTCCCTGAC 673
||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 469 CATCGAGGAGAACTGGGACAAGGTCAAGACCATAACTATACCAACAGGTGCTTCCCTGAC 528
Query 674 ACCTGAAATATGTGCACCTCTTGTGGCAACTCTTCC-CTTAGAGATCAAAGCTCAAATTG 732
| ||| ||||||||||||||||| ||||| ||||| || ||||||||||| || |||
Sbjct 529 ATTTGAGATATGTGCACCTCTTGTTGCAACCCTTCCTCT-AGAGATCAAAGGGGAACTTG 587
Query 733 AAGAATTTAT-CAAAGTCATTTTCACCCTATTCCAAGATCTTGATTTCACTTTCTTGGAG 791
|||| ||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 588 AAGATTTTATTCAA-GTCATTTTTACCCTATTCGAAGATCTTGATTTCACTTTCTTGGAG 646
Query 792 ATGAATCCTTTCAC-TCTAGTTGATGGAA-GTCCTTATCCTCTGGATATGAGGGGTGAGC 849
|||||||||||||| | | |||||||||| | ||||||||||||||||||||||||||||
Sbjct 647 ATGAATCCTTTCACAT-TGGTTGATGGAAAG-CCTTATCCTCTGGATATGAGGGGTGAGC 704
Query 850 TTGATGATACTGCCGCCTTCAAAAACTTTAAAAAATGGGGCGACATTGAATTTCCTATGC 909
||||||| || || || |||||||||||||| || |||||||||||||||||||| ||||
Sbjct 705 TTGATGACACCGCTGCTTTCAAAAACTTTAAGAAGTGGGGCGACATTGAATTTCCCATGC 764
Query 910 CATTTGGAAGAGTAATGAGTGCCACAGAAAGCTTTATCCATGGACTGGATGAGAAGACAA 969
||||||||||||| |||||| | ||||| ||||| ||||| || || |||||||||||||
Sbjct 765 CATTTGGAAGAGTGATGAGTTCAACAGAGAGCTTCATCCACGGTCTAGATGAGAAGACAA 824
Query 970 GTGCGTCTTTGAAGTTTACCGTTCTGAACCCCAAGGGACGGATTTGGACAATGGTAGCTG 1029
|||| ||||||||||| || |||||||| ||||||||| | |||||||| ||||||||||
Sbjct 825 GTGCCTCTTTGAAGTTCACTGTTCTGAATCCCAAGGGAAGAATTTGGACTATGGTAGCTG 884
Query 1030 GTGGAGGAGCAAGTGTCATCTATGCGGATACTGTTGGAGATCTCGGGTATGCATCTGAAC 1089
| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 885 GAGGAGGTGCAAGTGTCATCTATGCTGATACCGTTGGAGATCTCGGGTATGCATCTGAGC 944
Query 1090 TTGGCAACTATGCTGAATATAGTGGAGCACCCAAAGAAGATGAGGTTTTGCAGTACGCCA 1149
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 945 TTGGCAATTATGCTGAATACAGTGGAGCACCCAAAGAAGACGAGGTTTTGCAGTATGCCA 1004
Query 1150 GAGTCGTTATTGACTGTGCTACAGCAAACCCTGATGGAAAAAGCAGAGCTCTTGTGATTG 1209
|||| || ||||| ||||||||||| || || |||||||||||||| ||||| || ||||
Sbjct 1005 GAGTTGTCATTGATTGTGCTACAGCGAATCCGGATGGAAAAAGCAGGGCTCTGGTAATTG 1064
Query 1210 GGGGTGGAATTGCCAACTTCACTGATGTTGCTGCTACTTTCAATGGCATAATCCGCGCTC 1269
| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 1065 GAGGTGGAATTGCTAACTTCACCGATGTTGCTGCTACCTTCAATGGCATAATCCGAGCTC 1124
Query 1270 TTAAAGAAAAGGAAGCAAAGCTGAAAGCAGCAAGGATGCATATTTTTGTGAGGAGGGGAG 1329
| || ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1125 TCAAGGAAAAAGAAGCAAAGCTGAAAGCAGCAAGGATGCATATATTTGTGAGGAGAGGAG 1184
Query 1330 GACCAAACTACCAAAAGGGACTTGCTAAAATGCGAGCCCTTGGAGATGAAATCGGTGTCC 1389
|||||||||||||||||||||||||||||||| || | |||||||| |||||||||||||
Sbjct 1185 GACCAAACTACCAAAAGGGACTTGCTAAAATGAGATCACTTGGAGACGAAATCGGTGTCC 1244
Query 1390 CCATCGAGGTCTATGGTCCAGAAGCAACCATGACAGGTATCTGCAAGGAGGCCATCCAGT 1449
|||||||||| |||||||| |||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1245 CCATCGAGGTGTATGGTCCTGAAGCAACAATGACAGGTATATGCAAGGAGGCAATCCAGT 1304
Query 1450 ACATCACAGCAGCAGCATAAGC 1471
|||||||||| || ||||||||
Sbjct 1305 ACATCACAGCGGCTGCATAAGC 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82128091620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5