BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471202
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10720.1 | Symbols: | BSD domain-containing protein | chr1:... 1851 0.0
> AT1G10720.1 | Symbols: | BSD domain-containing protein | chr1:3562952-3564759
FORWARD LENGTH=1615
Length=1615
Score = 1851 bits (1002), Expect = 0.0
Identities = 1237/1340 (92%), Gaps = 57/1340 (4%)
Strand=Plus/Plus
Query 1 TCAATCATAATGTTTTCGAATTTTTTGGAAAGCTTATACGATGGAATCGGAGACGATGAC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 TCAATCATAATGTTTTCGAATTTTTTGGAAAGCTTATACGATGGAATCGGAGACGATGA- 62
Query 61 GCCGCCGCCGACGACGACGAAGACAACAAC-A-G-CGAGAAGACCCCGAGATCATCAACG 117
|||||||||||||||||||||||||||| | | |||||| ||||||| | | ||||||
Sbjct 63 --CGCCGCCGACGACGACGAAGACAACAACAACGACGAGAAAACCCCGAAAGCCTCAACG 120
Query 118 GAAAGACAAGATTACGAGAGAAACGCCGTTCGTTTGTCACCGGAAGAGGAGGCTCAAGCG 177
|||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAAGACACGATTTCTCGAGAAACGCCGTTCGTTTGTCACCGGAAGAGGAGGCTCAAGCG 180
Query 178 CGTGGTGTTAAAGATGATTTGACGGAACTTGGTCATACCCTCACGCGTCAATTTCGTGGT 237
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTGGGGTTAAAGATGATTTGACGGAACTTGGTCATACCCTCACGCGTCAATTTCGTGGT 240
Query 238 GTGGCTAACTTTCTCGCTCCGTTACCAGATGGATCTTCTTCAT-TT-AACCAATCT-T-G 293
|||||||||||||||||||||||||| |||||||||||||| | || || |||| | |
Sbjct 241 GTGGCTAACTTTCTCGCTCCGTTACCTGATGGATCTTCTTCTTCTTCCTCCGATCTATCG 300
Query 294 -GTC-T-TCAGATTTTGAATCGAATCAATCGCGGTCTTCGGATCTTAGAGTT-TATCAAT 349
| | ||| ||| || | ||||| |||||||| |||| | || || ||||||
Sbjct 301 AACCATCCCAG-GTTT-AA-C----CAATCTCGGTCTTCAGATCCTGGA-TTGAATCAAT 352
Query 350 CTCGGTCTTCAGATCGGGACGAATCGTGTGTTGGAAGTGATACGCCGGAGACTGGAATTA 409
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 CGCGTTCTTCAGATCGGGACGAATCGTGTGTTGGAAGTGATACGCCGGAGACTGGAATTA 412
Query 410 GGTTTAGGAGCT--G-----G--G----ATTTG--gaa-g-aa--a-----a--a-gagg 442
|||||||||||| | | | ||| | ||| | || | | | ||||
Sbjct 413 GGTTTAGGAGCTGGGATTTAGAAGAAAAATTGGCAGAAGGCAATGATCCGGAGGATGAGG 472
Query 443 aagaagaagaagaggaaacagatgaagaagaagaagaagaagaagagaTTGCTGCGGTTG 502
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 473 AAGAAGAAGAAGAGGAAACAGATGAAGAAGAAGAAGAAGAAGAAGAGATCGCTGCGGTTG 532
Query 503 CTCTTACCGACGAAGTGCTCGCATTTGCGAGGAACATAGCAATGCATCCAGAAACTTGGT 562
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CTCTTACAGACGAAGTGCTAGCATTTGCGAGGAACATAGCAATGCATCCAGAAACTTGGT 592
Query 563 TGGATTTTCCTCTTGATCCTGACGAAGATCTTGATGATTTGGAAATGACTGATGCTCAAA 622
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 593 TGGATTTTCCTCTTGATCCTGACGAAGATCTTGATGATTTGGAAATGAGTGATGCTCAAA 652
Query 623 GAGGTCATGCCTTAGCTATTGAGCGTCTTGCTCCGAGGTTAGCTGCATTGAGAATAGAGC 682
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GAGGTCATGCTTTAGCTATTGAGCGTCTTGCTCCGAGGTTAGCTGCATTGAGAATAGAGC 712
Query 683 TTTGTCCATGTCATATGAGTGTTGGTTACTTCTGGAAAGTCTATTTTGTTCTTCTTCTTT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TTTGTCCATGTCATATGAGTGTTGGTTACTTCTGGAAAGTCTATTTTGTTCTTCTTCTTT 772
Query 743 CGAGGCTCAATAAACACGATGCTCATCTTTTGTCTTCTCCACAGGTGATGGAAGCAAGAG 802
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 773 CAAGGCTCAATAAACACGATGCTCATCTTTTGTCTTCTCCACAGGTGATGGAAGCTAGAG 832
Query 803 CATTGTGGATGAAAGAGCTTCAGAATCAGACCA-ATTCTTCAAAAGAAGGTAGAGATAAG 861
|||||||||||||||||||||||||||||| || |||||||||||||| ||||||||| |
Sbjct 833 CATTGTGGATGAAAGAGCTTCAGAATCAGA-CACATTCTTCAAAAGAAAGTAGAGATATG 891
Query 862 ATTCTTGA-G--GAAGATATTACACCATCAACTTCAAATTACTACAACCATGCTCCTCCT 918
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 892 ATTCTTGAGGAAGAAGATATTACACCATCAACTTCTAATTACTACAACCATGCTCCTCCT 951
Query 919 GAGTTTCTTTCTCCAAGAATATATGCTTTTGAACCTCCTTCGATTATGTATCGCGATTTC 978
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GAGTTTCTTTCTCCAAGAATATATGCTTTTGAACCTCCTTCGATTATGTATCGCGATTTT 1011
Query 979 GAACACGGGTCTGAAAACGCTCGGTTTATCGATAAAGCTGTTATCGAGGAAAAACCAATC 1038
|||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 1012 GAACACGGGTTTGAAAACGCTCAGTTCATCGATAAAGCTGTTATTGAGGAAAAACCAATC 1071
Query 1039 CAGAAGAACGACAAAAATAGTGCAAGCCTTAGCCAAGCATCTAAAGA---TGTTGATGAC 1095
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 1072 CAGAAGAACGACAAAAATAGTGCAAGCCTTAGCCAAACATCTAAAGATGTTGTTGATGAT 1131
Query 1096 GATGATGATGATTGGCCAGACGAAGAAGATTCTGCTAATTCTTGGGCTCCAATGTTCACA 1155
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1132 GATGATGATGATTGGCCAGAAGAAGAAGATTCTGCTAATTCTTGGGCTCCAATGTTTACA 1191
Query 1156 GTGAATGAGGATGATGTTTCTTTCAGTGATCTAGAAGGAGACGACGATATAAGTAGCTTA 1215
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1192 GTGAATGAGGATGATGTTTCTTTCAGTGATCTTGAAGGAGACGACGATATAAGTAGCTTA 1251
Query 1216 GCACTCAAGTCTAAGATTACATCAAAGGGCACAGACCAAAAAGGAACATGAAACATCATC 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GCACTCAAGTCTAAGATTACATCAAAGGGCACAGACCAAAAAGGAACATGAAACATCATC 1311
Query 1276 TGGCTTGTTGCTTTGCCCTG 1295
||||||||||||||||||||
Sbjct 1312 TGGCTTGTTGCTTTGCCCTG 1331
Score = 150 bits (81), Expect = 3e-35
Identities = 84/85 (99%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 1296 TGTGTGCTGAGTCAAATCGTGGAAGTCTTTTGGGTGAGTTTGATTG-TTTGTGGATTTAT 1354
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1370 TGTGTGCTGAGTCAAATCGTGGAAGTCTTTTGGGTGAGTTTGATTGTTTTGTGGATTTAT 1429
Query 1355 GATGTTTGCTCTCAAAGAGAAGGAA 1379
|||||||||||||||||||||||||
Sbjct 1430 GATGTTTGCTCTCAAAGAGAAGGAA 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67921337385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5