BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471212
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10770.1 | Symbols: | Plant invertase/pectin methylesterase... 1164 0.0
> AT1G10770.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:3591633-3592411 REVERSE
LENGTH=779
Length=779
Score = 1164 bits (630), Expect = 0.0
Identities = 729/775 (94%), Gaps = 13/775 (2%)
Strand=Plus/Plus
Query 1 CTGGTGCTAATTTCTTCTCAATTCAAATACATAAATAAATATTAATCAAATGGCGGGCCG 60
|||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1 CTGGTGATAATTTCTTCTCAATTCAAATACATAAATAAATATCAATAAAATGGCGGGCCG 60
Query 61 CGACACATTCCAGCTGCGTTTCGCGGCTGTCGCGGCATCCGCTGCCGTATTGATCTTTCT 120
||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||
Sbjct 61 CGACACATTCCAGCTGCGTTTTGCAGCAGTCGCGGCATCCGCCGCCGTATTGATCTTTCT 120
Query 121 CATGGCTGGTCAAGTCGCGGAGTCGCGTATGATCAACCTCTGCTCTCACACCGCGTATCC 180
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 CATGGCTGGTCAAGTCGCGGAGTCGCGTATGATCAATATCTGCTCTCACACCGCGTATCC 180
Query 181 ATCTTTGTGCCGACCTCTGGTGAAACGTGTCACGAGCCCTAGAAAAGCCACGCACCGAAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCTTTGTGCCGACCTCTGGTGAAACGTGTCACGAGCCCTAGAAAAGCCACGCACCGAAC 240
Query 241 CATCCAGGCTTTGGAGGCTAAGACCAAACTAGCTCTAGCCGAAGCAGCTAGGTTCAAAAA 300
|||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 241 CATCCAAGCTTTGGAGGCTAAGACGAAACTAGCTCTAGCCGAAACAGCTAGGTTCAAAAA 300
Query 301 TGGTAACCAAGCGGTCAACACGTGTTACGAGACACTGAGCGATGCGGTTTACAATTTGGC 360
|||||||||||||||| |||||||||||||||| || |||| |||||||||||||||||
Sbjct 301 CGGTAACCAAGCGGTCAGCACGTGTTACGAGACATTGGGCGACGCGGTTTACAATTTGGC 360
Query 361 GAGCGCGAGAAAGAGCATAAGGAAACGCAATGTGCCGGCGATGAACACGTATCTAACTGC 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 AAGCGCGAGAAAGAGCATAAGGAAACGTGATGTGCCGGCGATGAACACGTATCTAACTGC 420
Query 421 GGCAGTGTCTGATTACGGTGCATGTGTGGACGGGTTTATTGAAACACGTCAGGTTAATGC 480
||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 421 GGCTGTGTCTGATTACGGTGCATGTGTGGACGGGTTCATTGAAACACAACAGGTTAATGC 480
Query 481 GATCCAGAATGCAGTGGTTGACTTGAGAAAAATTAGCAGCAATTGCTTGACGTTGTCTAC 540
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 GATCCAAAATGCAGTGGTTGACTTGAGAAAAATTAGCAGCAATTGCTTGGCGTTGTCTAC 540
Query 541 ATTGATTAGATGATCGATTTAAGAGAACATTTGATGATTATTTTTTCTCAAAACAAAAAC 600
||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 541 ATTGATTAGATGATCGATTTAAGAGAACAATTGAT--TTAATTTTTCTCAAAACAAAAAC 598
Query 601 TAATTAATTGAAGAAATaaaaaaaaTCTTAA-CAAATTTAAAAtttgggtttctttttgt 659
||||||||||||||||||||||| ||| || ||| || |||||||||||||||||||||
Sbjct 599 TAATTAATTGAAGAAATAAAAAA--TCTCAAGCAA-TT-AAAATTTGGGTTTCTTTTTGT 654
Query 660 tgtttttgttttgggaga-actgtttgttg---ATCCATCATTCGTATGTAACGCCACTG 715
||||||||||||| |||| | ||||||||| |||||||||||||||||||||||||||
Sbjct 655 TGTTTTTGTTTTGAGAGAGA-TGTTTGTTGTTGATCCATCATTCGTATGTAACGCCACTG 713
Query 716 GGTGTAATTAATTATATTTCA-TTTCGTGTAATTAATAATCGCTAGAAGATTTTT 769
||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 714 GGTGTAACTAATTATATTTGAATTTCGTGTAATTAATAATCGCTAGTAGATTTTT 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5