BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471213
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10780.1 | Symbols: | F-box/RNI-like superfamily protein | ... 2158 0.0
> AT1G10780.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:3592746-3595077 REVERSE LENGTH=1470
Length=1470
Score = 2158 bits (1168), Expect = 0.0
Identities = 1342/1425 (94%), Gaps = 15/1425 (1%)
Strand=Plus/Plus
Query 1 CACAAGATTCTAGGTCGACCCAGATTTAAGAGATTCACCAAATGGACTCTCTTCCTGATG 60
||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||
Sbjct 49 CACAAGATTCTAGTTCGACCCAGA-TT----CATTCATCAAATGGACTCTCTTCCTGATG 103
Query 61 CGATCCTTCAATACATTCTTTCCAACCTGACTGCTGCAAGGGATGTGGCTGCTTGCAACT 120
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 104 CGATCCTTCAATACATTCTTTCCTACCTGACTTCTGCAAGGGATGTGGCTGCTTGCAACT 163
Query 121 GTGTTTCCAAGCGATGGAAAGAGTCAACAGACTCTGTTACGAGCATTGTATTCCCCCGGA 180
|||| |||||||||||||||||||| ||||||||||||| |||| |||| |||| | |||
Sbjct 164 GTGTCTCCAAGCGATGGAAAGAGTCTACAGACTCTGTTAAGAGCGTTGTTTTCCACAGGA 223
Query 181 ATTCTTTCGAAAGCATCATCGAGACTGATCATTCTGACACCATCGTTCGGAAGATGATCT 240
|||| |||||||||||||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct 224 ATTCATTCGAAAGCATCATGGAGACTGATGATTCTGACTCCATCGTTCGGAAGATGATCT 283
Query 241 CTTCTTCTCGTCGTCTTGAGAAGCTTGTGGTGTATAGCCCATTCACTAGCAAG-GGCTTA 299
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| ||
Sbjct 284 CTTCTTCTCGTCGTCTTGAGGAGCTTGTGGTGTATAGCCCATTCACTAGC-AGCGGCCTA 342
Query 300 GCATCTTGGATGATGCATGTCAGTTCATCTCTTAGGCTATTGGAGCTAAGAATGGATAAT 359
|||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 343 GCATCTTGGATGATGCATGTGAGTTCATCTCTAAGGCTATTGGAGTTAAGAATGGATAAT 402
Query 360 CTCGCTAGCGAAGAGGTTATTGTAGAAGGCCCTTTGAAGCTTGATTGCATTGGTGTGGCC 419
||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 403 CTCGCTAGCGAGGAGGTTGTTGTCGAAGGCCCTTTGAAGCTTGATTGCATTGGTGTGGCC 462
Query 420 AAGAATTTGGAGACTTTGAGGCTTTGGGGTGTTTTAATGATGAGCCCTCCCAAGTGGGAT 479
||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 463 AAGAATTTGGAGATTTTGAAGCTTTGGGGTGTTTTAATGATGAGCCCTCCTAAGTGGGAT 522
Query 480 ATGTTCCCAAACCTTCGCTGCCTCGAAATAGTAGGAGCAAGAACGGATGATTCCGCACTG 539
||||||||||||||||| ||||||||||||| ||||||| || |||||||||| |||||
Sbjct 523 ATGTTCCCAAACCTTCGAAGCCTCGAAATAGTGGGAGCAAAAATGGATGATTCCTCACTG 582
Query 540 TGTCATGCTCTTCGTGCATGCCCGAATCTGAGTAACTTGCTTCTACTAGCTTGTGAGGGA 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TCTCATGCTCTTCGTGCATGCCCGAATCTGAGTAACTTGCTTCTACTAGCTTGTGAGGGA 642
Query 600 GTTAAATCCATATCAATCGATCTGCCATACTTGGAGCACTGTAAGCTGGATTTCTATGGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GTTAAATCCATATCAATCGATCTGCCATACTTGGAGCACTGTAAGCTGGATTTCTATGGA 702
Query 660 CCAGGTAACAGCTTGCTAGCCCTCACGAGTCCGAGATTAGTGTCCCTTGATGTTCAAGGC 719
| |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 703 CAAGGTAACACCTTGCTAGTCCTCACGAGTCAGAGATTAGTGTCCCTTGATGTTCAAGGT 762
Query 720 TGTAGCTGGATCCGTGTCCCTGATACCAGATTCTTAAAGAACCTATCCATCTCCAGTGTT 779
||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 763 TGTAGCTGGATTCGTGTCCCTGAAACCAAATTCTTAAAGAACCTATCCATCTCCAGTGTT 822
Query 780 TCAACAGGGAGAGTCTACATGGTAGATTTCAATAATCTTTCATCGCTTGAGGCCTTGTCA 839
| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 --A-CTGGGAGAGTTTACATGGTAGATTTCAATAATCTTTCATCGCTTGAGGCCTTGTCG 879
Query 840 ATTCGAGGTGTGCAATGGTGTTGGGATGCGATATGCATGATACTGCAGCAAGCAAGAGAC 899
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 880 ATTCGAGGTGTACAATGGTGTTGGGATGCAATATGCATGATACTGCAGCAAGCAAGAGAC 939
Query 900 GTGAAGCATCTCTTTATGAAGGTCGAATTCACAGGCAATGAGGCTCTTCAACCTTTCCCT 959
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 940 GTGAAGCATCTCTTTATGAAGGTTGAATTCACAGGCAATGAGGCTCTTCAACCTTTCCCT 999
Query 960 GAGATTGATTTTGTCGAGTTCTTCAATAACCATCCAAAGCTTCAAACATTTGACATCCAT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1000 GAGATTGATTTTGTCGAGTTCTTCAATAACCATCCAAAGCTTCAAACATTCGACATCCAT 1059
Query 1020 GGAGCAATGTTTGCTGCACTTTGCCAGAAAAACAGCCTTAAGAAGCTTGAGACAGGATTT 1079
||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1060 GGAGCAATGTTCGCTGCACTCTGCCAGAAAAACAGCCTTAAGAAGCTTGAGACCGGATTT 1119
Query 1080 GCAATACCGTATTTGGAAGAGGTTGTTATCACAGTGAGATCTCCACTGAACGCAGAACAG 1139
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 ACAATACCGTGTTTGGAGGAGGTTGTTATCACAGTGAGATCTCCACTGAACGCAGAACAG 1179
Query 1140 AAGATGAACACGCTTGAATCACTTTTGAAATACGCAAGAGGTCTGAAACGAATGGTGATA 1199
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1180 AAGATGAACACGCTTGAATCACTAGTGAAATACGCGAGAGGTCTGAAACGAATGGTGATA 1239
Query 1200 AGGATTCTTCAGATGAAGAGCAATCACAGCAGTGCAGATGATTTCTGTGATGATATCTGC 1259
|||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1240 AGGATTCTCCGGATGAAGAGCAATCACAGCAGTGCAGATGATTTCTGCGATGATATCTGC 1299
Query 1260 AAGTTCCGGCACATGAACGAGCATCTTGTTCAAATAGAATGATATA-TTTTCTTGCTGCT 1318
|||||||||||||||||||||||||||||||| ||||||||| ||| |||| ||||||||
Sbjct 1300 AAGTTCCGGCACATGAACGAGCATCTTGTTCATATAGAATGAAATAATTTT-TTGCTGCT 1358
Query 1319 AATCT-ATTTTTCACCCATTTGATTTCTGTTTCTCATTCTGGTAGCTGAGCATTTCTTAA 1377
||||| ||||| || |||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1359 AATCTTATTTT-CAGCCATTTGATTTCTGTTTCTCTTTCTGGTCGCTGAGCATTTCTTA- 1416
Query 1378 TTTTGAACTCTTGAGTAATTTTTGTTTCCTGATTCATGGTTATGA 1422
| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1417 TATTGAACTCTTGAGTAATTGTTGTTTCCTGATTCATGGTTATGA 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5