BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471219
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10830.1 | Symbols: Z-ISO, Z-ISO1.1 | 15-cis-zeta-carotene i... 1903 0.0
> AT1G10830.1 | Symbols: Z-ISO, Z-ISO1.1 | 15-cis-zeta-carotene
isomerase | chr1:3605576-3607493 REVERSE LENGTH=1308
Length=1308
Score = 1903 bits (1030), Expect = 0.0
Identities = 1117/1159 (96%), Gaps = 5/1159 (0%)
Strand=Plus/Plus
Query 1 TTTATTATTTCTTCTTCGAAAGATTTTTTACCAACAAGAACAATGGCGGTTTATCAtctc 60
||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3 TTTATTACTTCCTCTTCGAAAGATTGTTTACCAACAAGAACAATGGCGGTTTATCATCTC 62
Query 61 cttctctcgagcccaccttcgcttcttcttcttcctccttctcctcGCCGCCCTAACCTC 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 63 CTTCTCTCGAGCCCACCTTCGCTTCTTCTTCTCCCTCCTTCTCCTCGCCGCCCTAACCTC 122
Query 121 ACCTTAATCCGCCGTATCCCAGCTCATCCTCGTCTCGGAAACTCGACCAGCTTGCTTTCT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 123 ACCTTAATCCGCCGTATCCCAGCTCATCCTCGCCTCGGAAACTCGACCAGCTTGCTTTCT 182
Query 181 TCTTCGTCACCGGTCATTCGGAAAATTCTCGTCCGTAGCACTCTCCGGGAAGACCAACCA 240
|||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 183 TCTTCGTCACCGGTAATTCGGAAAATTCTGGTTCGTAGCACTCTCCGGGAAGACCAACCC 242
Query 241 ATCGCCTCTGACGCC--GAG-AGTCCTACTCTACTGATCGGCGAAGATTCTGCTGCTTTT 297
|||||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 243 ATCGCCTCTGACTCCGAGAGTAGTCCTACTCTACTGATCGGTGAAGATTCTGCTGCTTTT 302
Query 298 GAATTAGGGAAGCAGAAGCTTGTTTCCTGGGTTTATTTCGGTGTTGTTCTTGGAGTTGTT 357
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 303 GAATTAGGGAAACAGAAGCTTGTTTCCTGGGTTTATTTCGGTGTTGTCCTTGGAGTTGTT 362
Query 358 CTCTACATCCTCAATGTTGTTTGGATCGATAATTCGACCGGTTTCGGAAAATCATTCATC 417
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 363 CTCTTTATCCTCAATGTTGTTTGGATCGATAATTCCACCGGTTTCGGAAAATCATTCATC 422
Query 418 GACGCCGTCTCTAGCATCTCCGGTTCACCGGAGGTTGCTATGTTAATGCTTATCCTCATA 477
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 423 GACGCCGTCTCTAACATCTCCGGCTCACCGGAGGTTGCTATGTTAATGCTTATCCTTATA 482
Query 478 TTTGCAATTGTACATAGTGGTTTAGCTAGTCTCAGGGATATAGGAGAGAAACTTATAGGT 537
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 483 TTTGCAATTGTACATAGTGGTTTAGCTAGTCTAAGGGATATAGGAGAGAAACTTATAGGT 542
Query 538 GAACGAGCATTTCGTGTTTTGTTTGCTGGAATCTCTCTTCCTTTAGCTATGAGCACCATT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GAACGAGCATTTCGTGTTTTGTTTGCTGGAATCTCTCTTCCTTTAGCTATGAGCACCATT 602
Query 598 GTTTACTTTATAAACCATAGATACGATGGGTCACAGTTATGGCAGCTTCAGGGTGTTCCT 657
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 603 GTTTACTTTATAAACCATAGATATGATGGGTCACAGTTATGGCAGCTTCAGGGTGTTCCT 662
Query 658 GGAGTCCATGAAGCTGTTTGGGTCGCTAATTTTGTATCCTTCTTCTTTCTATATCCTTCA 717
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 663 GGAGTCCATGAAGCTATTTGGGTCGCTAATTTTGTATCCTTCTTCTTTCTCTATCCTTCA 722
Query 718 ACCTTCAATCTTCTGGAGGTAGCAGCTGTTGACAAACCGAAGATGCATCTCTGGGAGACC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 ACCTTCAATCTTCTGGAGGTAGCAGCTGTTGACAAACCGAAGATGCATCTCTGGGAGACC 782
Query 778 GGCATCATGAGAATCACTCGACATCCTCAGATGGTTGGACAAATTGTTTGGTGTTTAGCA 837
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 783 GGCATCATGAGAATCACTCGACATCCTCAGATGGTTGGACAAATCGTTTGGTGTTTAGCA 842
Query 838 CACACTCTCTGGATCGGAAACACAGTAGCTGCATCGGCTTCTCTCGGTTTGATTGCACAC 897
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 843 CATACTCTCTGGATCGGAAACACAGTAGCTGCATCAGCTTCTCTCGGTTTGATTGCACAC 902
Query 898 CATTTGTTTGGGGCGTGGAATGGAGACAGGAGATTAGCTAAAAGATACGGAGAGGCTTTT 957
||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||||
Sbjct 903 CATTTGTTTGGGGCGTGGAATGGAGACAGGAGATTGGCAAAAAGATATGGAGAGGATTTT 962
Query 958 GAAAGCATCAAAAAGAGAACAAGTGTGATTCCATTTGCTGCGATTTTCGAAGGGCGGCAA 1017
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 963 GAAAGCATCAAGAAGAGAACAAGTGTGATTCCATTTGCTGCCATTTTCGAAGGACGGCAA 1022
Query 1018 GTTTTGCCTGAGGATTACTACAAAGAATTTGTTC-GGTTGCCATATCTTGCAATCACTGC 1076
||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1023 GTTTTACCTGAGGATTACTACAAAGAATTTGT-CAGGTTGCCATATCTTGCAATCACTGC 1081
Query 1077 GTTAACGGTTGGGGCATATTTTGCTCACCCGCTAATGCAAGGTGCAAGCTTTAGGCTTCA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GTTAACGGTTGGGGCATATTTTGCTCACCCGCTAATGCAAGGTGCAAGCTTTAGGCTTCA 1141
Query 1137 TTGGTAGATTCTTTGTCAT 1155
|||||| ||| | ||||||
Sbjct 1142 TTGGTAAATTATATGTCAT 1160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5