BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471219 Length=1245 Score E Sequences producing significant alignments: (Bits) Value AT1G10830.1 | Symbols: Z-ISO, Z-ISO1.1 | 15-cis-zeta-carotene i... 1903 0.0 > AT1G10830.1 | Symbols: Z-ISO, Z-ISO1.1 | 15-cis-zeta-carotene isomerase | chr1:3605576-3607493 REVERSE LENGTH=1308 Length=1308 Score = 1903 bits (1030), Expect = 0.0 Identities = 1117/1159 (96%), Gaps = 5/1159 (0%) Strand=Plus/Plus Query 1 TTTATTATTTCTTCTTCGAAAGATTTTTTACCAACAAGAACAATGGCGGTTTATCAtctc 60 ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3 TTTATTACTTCCTCTTCGAAAGATTGTTTACCAACAAGAACAATGGCGGTTTATCATCTC 62 Query 61 cttctctcgagcccaccttcgcttcttcttcttcctccttctcctcGCCGCCCTAACCTC 120 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 63 CTTCTCTCGAGCCCACCTTCGCTTCTTCTTCTCCCTCCTTCTCCTCGCCGCCCTAACCTC 122 Query 121 ACCTTAATCCGCCGTATCCCAGCTCATCCTCGTCTCGGAAACTCGACCAGCTTGCTTTCT 180 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 123 ACCTTAATCCGCCGTATCCCAGCTCATCCTCGCCTCGGAAACTCGACCAGCTTGCTTTCT 182 Query 181 TCTTCGTCACCGGTCATTCGGAAAATTCTCGTCCGTAGCACTCTCCGGGAAGACCAACCA 240 |||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| Sbjct 183 TCTTCGTCACCGGTAATTCGGAAAATTCTGGTTCGTAGCACTCTCCGGGAAGACCAACCC 242 Query 241 ATCGCCTCTGACGCC--GAG-AGTCCTACTCTACTGATCGGCGAAGATTCTGCTGCTTTT 297 |||||||||||| || ||| |||||||||||||||||||| |||||||||||||||||| Sbjct 243 ATCGCCTCTGACTCCGAGAGTAGTCCTACTCTACTGATCGGTGAAGATTCTGCTGCTTTT 302 Query 298 GAATTAGGGAAGCAGAAGCTTGTTTCCTGGGTTTATTTCGGTGTTGTTCTTGGAGTTGTT 357 ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 303 GAATTAGGGAAACAGAAGCTTGTTTCCTGGGTTTATTTCGGTGTTGTCCTTGGAGTTGTT 362 Query 358 CTCTACATCCTCAATGTTGTTTGGATCGATAATTCGACCGGTTTCGGAAAATCATTCATC 417 |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 363 CTCTTTATCCTCAATGTTGTTTGGATCGATAATTCCACCGGTTTCGGAAAATCATTCATC 422 Query 418 GACGCCGTCTCTAGCATCTCCGGTTCACCGGAGGTTGCTATGTTAATGCTTATCCTCATA 477 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 423 GACGCCGTCTCTAACATCTCCGGCTCACCGGAGGTTGCTATGTTAATGCTTATCCTTATA 482 Query 478 TTTGCAATTGTACATAGTGGTTTAGCTAGTCTCAGGGATATAGGAGAGAAACTTATAGGT 537 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 483 TTTGCAATTGTACATAGTGGTTTAGCTAGTCTAAGGGATATAGGAGAGAAACTTATAGGT 542 Query 538 GAACGAGCATTTCGTGTTTTGTTTGCTGGAATCTCTCTTCCTTTAGCTATGAGCACCATT 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 GAACGAGCATTTCGTGTTTTGTTTGCTGGAATCTCTCTTCCTTTAGCTATGAGCACCATT 602 Query 598 GTTTACTTTATAAACCATAGATACGATGGGTCACAGTTATGGCAGCTTCAGGGTGTTCCT 657 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 603 GTTTACTTTATAAACCATAGATATGATGGGTCACAGTTATGGCAGCTTCAGGGTGTTCCT 662 Query 658 GGAGTCCATGAAGCTGTTTGGGTCGCTAATTTTGTATCCTTCTTCTTTCTATATCCTTCA 717 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 663 GGAGTCCATGAAGCTATTTGGGTCGCTAATTTTGTATCCTTCTTCTTTCTCTATCCTTCA 722 Query 718 ACCTTCAATCTTCTGGAGGTAGCAGCTGTTGACAAACCGAAGATGCATCTCTGGGAGACC 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 ACCTTCAATCTTCTGGAGGTAGCAGCTGTTGACAAACCGAAGATGCATCTCTGGGAGACC 782 Query 778 GGCATCATGAGAATCACTCGACATCCTCAGATGGTTGGACAAATTGTTTGGTGTTTAGCA 837 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 783 GGCATCATGAGAATCACTCGACATCCTCAGATGGTTGGACAAATCGTTTGGTGTTTAGCA 842 Query 838 CACACTCTCTGGATCGGAAACACAGTAGCTGCATCGGCTTCTCTCGGTTTGATTGCACAC 897 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 843 CATACTCTCTGGATCGGAAACACAGTAGCTGCATCAGCTTCTCTCGGTTTGATTGCACAC 902 Query 898 CATTTGTTTGGGGCGTGGAATGGAGACAGGAGATTAGCTAAAAGATACGGAGAGGCTTTT 957 ||||||||||||||||||||||||||||||||||| || |||||||| ||||||| |||| Sbjct 903 CATTTGTTTGGGGCGTGGAATGGAGACAGGAGATTGGCAAAAAGATATGGAGAGGATTTT 962 Query 958 GAAAGCATCAAAAAGAGAACAAGTGTGATTCCATTTGCTGCGATTTTCGAAGGGCGGCAA 1017 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 963 GAAAGCATCAAGAAGAGAACAAGTGTGATTCCATTTGCTGCCATTTTCGAAGGACGGCAA 1022 Query 1018 GTTTTGCCTGAGGATTACTACAAAGAATTTGTTC-GGTTGCCATATCTTGCAATCACTGC 1076 ||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1023 GTTTTACCTGAGGATTACTACAAAGAATTTGT-CAGGTTGCCATATCTTGCAATCACTGC 1081 Query 1077 GTTAACGGTTGGGGCATATTTTGCTCACCCGCTAATGCAAGGTGCAAGCTTTAGGCTTCA 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1082 GTTAACGGTTGGGGCATATTTTGCTCACCCGCTAATGCAAGGTGCAAGCTTTAGGCTTCA 1141 Query 1137 TTGGTAGATTCTTTGTCAT 1155 |||||| ||| | |||||| Sbjct 1142 TTGGTAAATTATATGTCAT 1160 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61194464355 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5