BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471223
Length=2658
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10850.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3838 0.0
> AT1G10850.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:3611747-3614613 FORWARD LENGTH=2743
Length=2743
Score = 3838 bits (2078), Expect = 0.0
Identities = 2515/2715 (93%), Gaps = 74/2715 (3%)
Strand=Plus/Plus
Query 1 TATTCATGAATGCATTGAAGAAGGCACAGTGAGaaaaaaaaaaaaaaaaaGGTTTTTCAG 60
||||||||||||||||||||| | ||||||||| || ||||||||| ||||| |||
Sbjct 9 TATTCATGAATGCATTGAAGATGTCACAGTGAG-----AACAAAAAAAAA-GTTTTCCAG 62
Query 61 GCATGGCTTCACGTGATGACATCTTCCTCGACCAAGAACTTCGAGAAAAGATACTCAGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GCATGGCTTCACGTGATGACATCTTCCTCGACCAAGAACTTCGAGAAAAGATACTCAGAA 122
Query 121 AGTGAGTGTgagagagagagaCAATGCC-GGAAATTTTTAAAGCTTCTTCTTCTCTTCTT 179
||||| |||||||||||||| |||||| || || |||||| ||||||||||||||||||
Sbjct 123 AGTGA-AGTGAGAGAGAGAGAAAATGCCGGGGAA-TTTTAATGCTTCTTCTTCTCTTCTT 180
Query 180 CA-TGCTCACTACCAGACGATTTTC-ATCCGCCATT-------A-A--AGAGCAGAGCTC 227
| |||||||||||||| || |||| ||||||||| | | ||||||||||||
Sbjct 181 -AGTGCTCACTACCAGAAGA-TTTCTTTCCGCCATTAAAGAGCAGAGTAGAGCAGAGCTC 238
Query 228 TCAc--t-ttcttcttcttc-t--tttttgaccttt-ccttttttgcttcGATCGAGATG 280
|||| | |||||||||||| | ||||| |||||| |||||||||||||||||||||||
Sbjct 239 TCACTTTCTTCTTCTTCTTCTTCATTTTTTACCTTTCCCTTTTTTGCTTCGATCGAGATG 298
Query 281 CTTTAGCATAATGGGGCAGATCCGGAAAGTGACTTAATAATGGAAAGTGATGGCTTTGAG 340
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 299 CTTTAGCATAATGGGGCAGATCTGGAAAGTGACTTAATAATAGAAAGTGATGGCTTTGAG 358
Query 341 GAGATTCATGGGATGCTTTTAATGGAAACTCGATTTCGAACTGTATCAATCA------TT 394
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 359 GAGATTCATGGGATGCTTTTTATGGAAACTCGATTTCGAACTGTATCAATCATTTCTGTT 418
Query 395 TC-TTTATGAGCTGAGGAAAAAGAGCCACTCTTTTC-GATTTGATTGAATCATTCATTTC 452
|| |||||||||||||| ||||||||||||| |||| ||||||||||| ||| ||| |||
Sbjct 419 TCTTTTATGAGCTGAGG-AAAAGAGCCACTC-TTTCTGATTTGATTGATTCA-TCA-TTC 474
Query 453 ATCGAACAATGG---------cttcttc-t--tc-t----t-c--t-tc-ttcGTAGTCT 490
|||| ||||||| ||||||| | || | | | | || ||||||||||
Sbjct 475 ATCG-ACAATGGCTTCTTCTTCTTCTTCTTCGTCTTCGAGTACGGTGTCGTTCGTAGTCT 533
Query 491 TTGCATTTACAGTATTCTTCTGTTTGGTTTCTCCGGCGAGATCTAACGACGTCGAAGCTT 550
||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 534 TTGCATTTACAGTCTTCTTCTGTTTGGTTACTCCGGCGAGATCTAGCGACGTCGAAGCTT 593
Query 551 TACTAAGCTTGAAATCCTCAATCGATCCATCTAATTCGATTTCATGGCGAGGAACAGATC 610
|||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 594 TACTAAGCTTGAAATCTTCAATCGATCCATCTAATTCGATTTCTTGGAGAGGAACAGATC 653
Query 611 TCTGCAACTGGCAAGGTGTTAGAGAATGTATGAACGGAAGAGTCTCCAAGCTTGTTCTTG 670
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 654 TCTGCAACTGGCAAGGTGTTAGAGAATGTATGAATGGAAGAGTCTCCAAGCTTGTTCTTG 713
Query 671 AGTTTTTGAATCTCACTGGCTCACTCGACCAGAGGAGTTTAAACCAATTGGATCAACTTA 730
||| ||||||||||| |||||||| || ||| |||||| ||||| |||||||||||||
Sbjct 714 AGTACTTGAATCTCACCGGCTCACTTAACGAGAAGAGTTTGAACCAGTTGGATCAACTTA 773
Query 731 GGGTTCTTAGTTTCAAAGCTAACTCTCTCTCCGGTTCAATCCCTAATCTCTCCGGTTTGG 790
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 774 GGGTTCTTAGTTTCAAAGCTAACTCTCTCTCCGGTTCAATCCCTAACCTCTCCGGTTTGG 833
Query 791 TTAACCTCAAATCGGTTTTTCTCAACGATAACAACTTCTCCGGCGAGTTCCCGGAGTCTC 850
|||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 834 TTAACCTCAAATCGGTTTATCTTAACGATAACAACTTCTCCGGCGACTTCCCGGAGTCTC 893
Query 851 TCACGTCTCTTCACCGATTGAAAACCATTTTCCTCTCCGGTAACAGATTGTCCGGTCGAA 910
||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 894 TCACGTCTCTTCACCGATTGAAAACTATTTTCCTCTCCGGAAACAGACTGTCCGGTCGAA 953
Query 911 TCCCTAGCTCGTTGCTCCGTCTCTCTCGTCTTTACACGCTCAATGTTCAGGACAATTTCT 970
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 954 TCCCTAGCTCGTTGCTTCGTCTCTCTCGTCTTTACACGCTCAATGTTGAGGACAATCTCT 1013
Query 971 TCACTGGTTCAATCCCTCCTCTTAACCAGACGAGTCTCAGATACTTCAATGTATCCAACA 1030
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1014 TCACTGGTTCGATTCCTCCTCTTAACCAGACAAGTCTCAGATACTTCAATGTATCCAACA 1073
Query 1031 ATCAGCTCTCTGGTCAAATTCCACCGACACGAGCTCTGAAGCAGTTTGATGAGTCATCGT 1090
|| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1074 ATAAGCTCTCTGGTCAAATTCCACTGACACGAGCTTTGAAGCAGTTTGATGAGTCATCGT 1133
Query 1091 TTACCGGAAACGTCGCTCTTTGCGGCGATCAGATTCAAAGTCCATGCGGAATCTCACCTG 1150
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1134 TTACCGGAAACGTCGCTCTTTGCGGCGATCAGATTGGAAGTCCATGCGGAATCTCACCTG 1193
Query 1151 CGCCGTCTGCGAAACCAACGCCTATACCTAAGTCTAAGAAGAGCAAAGCGAAGCTAATCG 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1194 CGCCGTCTGCGAAACCAACGCCTATACCTAAGTCTAAGAAGAGCAAAGCGAAGCTGATCG 1253
Query 1211 GAATTATCGCCGGAAGCGTCGCCGGTGGGGTACTAATCCTTATCTTGCTGTTGACGTTGA 1270
| ||||||||||||||||| ||||| || |||||| ||||||||||||| |||||||||
Sbjct 1254 GGATTATCGCCGGAAGCGTTGCCGGCGGAGTACTAGTCCTTATCTTGCTATTGACGTTGC 1313
Query 1271 TTATCGTCTGCTGGCGACGGAAGCGGCGGAGCCAGGCACCAAGGGAAGATAGAAAAGGTA 1330
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1314 TTATCGTCTGCTGGCGACGGAAGCGGCGGAACCAGGCACCGAGGGAAGATAGAAAAGGTA 1373
Query 1331 AAGGAATAGTTGAAGCAGAAGGAGCAACACCTGCAGAAACAGAGAGAGACATTGAGAGGA 1390
||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1374 AAGGAATAGCGGAAGCAGAAGGAGCAACAACTGCAGAGACAGAGAGAGACATTGAGAGGA 1433
Query 1391 AAGACAGAGGATTCTCATGGGAAAGAGGCGAAGAAGGAGCAGTGGGCACTTTGGTTTTCC 1450
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct 1434 AAGACAGAGGATTCTCATGGGAAAGAGGCGAAGAAGGTGCAGTGGGAACTCTGGTTTTCC 1493
Query 1451 TTGGAACTAGTGATTCAGGCGAGACGGTGGTGAGATACACCATGGAAGATCTGCTTAAAG 1510
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1494 TTGGAACCAGTGATTCAGGCGAGACGGTAGTGAGATACACCATGGAAGATCTGCTAAAAG 1553
Query 1511 CTTCGGCAGAGACACTGGGAAGAGGAACGTTGGGGAGCACGTACAAGGCTGTGATGGAGT 1570
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 CTTCGGCAGAGACATTGGGAAGAGGAACGTTGGGGAGCACGTACAAGGCTGTGATGGAGT 1613
Query 1571 CTGGTTTCATAGTCACTGTGAAGAGACTCAAGAACGCTAGGTATCCTCGCATGGAGGAAT 1630
|||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 1614 CTGGGTTCATTGTCACTGTGAAGAGGCTCAAGAACGCAAGGTATCCTCGCATGGAGGAGT 1673
Query 1631 TCAAGAGACATGTTGAGATCCTTGGACAGCTCAAACACCCAAATCTGGTTCCTCTCAGAG 1690
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1674 TCAAGAGACATGTTGAGATCCTTGGACAGCTCAAACACCCAAATCTGGTGCCTCTCAGAG 1733
Query 1691 CCTATTTCCAAGCCAAAGAGGAACGCTTGCTTGTCTATGATTACTTCCCCAATGGCAGTC 1750
||||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 1734 CCTATTTTCAAGCCAAGGAAGAACGCTTGCTCGTCTACGATTACTTCCCTAATGGCAGTC 1793
Query 1751 TCTTCACTCTTATTCACGGAACTAGGGCTTCTGGAAGTGGGAAGCCTCTTCACTGGACTT 1810
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 TCTTTACTCTTATTCACGGAACTAGGGCTTCTGGAAGTGGGAAGCCTCTTCACTGGACTT 1853
Query 1811 CATGCCTGAAAATAGCTGAGGACTTGGCCTCAGCTCTGCTCTACATTCATCAGAATCCTG 1870
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1854 CATGCCTGAAAATAGCTGAGGACTTGGCCTCAGCTCTGCTCTACATACATCAGAATCCTG 1913
Query 1871 GCCTAACTCATGGGAACTTGAAATCGTCCAATGTCTTGTTAGGTCCTGATTTTGAGTCCT 1930
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 GCTTGACTCATGGGAATTTGAAATCGTCCAATGTCTTGTTAGGTCCTGATTTTGAGTCCT 1973
Query 1931 GCCTCACAGATTACGGGCTCAGCACTCTCCATGACCCTGACTCGGTTGAAGAAACAAGCG 1990
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1974 GCCTCACGGATTACGGCCTCAGCACTCTCCATGACCCTGACTCAGTTGAAGAAACAAGCG 2033
Query 1991 CTGTCTCTCTCTTTTACAAAGCTCCTGAGTGCAGAGACCCAAGGAAAGCCTCTACACAGC 2050
| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 2034 CAGTGTCTCTCTTTTACAAAGCTCCAGAGTGCAGAGACCCACGGAAAGCCTCTACACAGC 2093
Query 2051 CTGCTGATGTCTATAGCTTTGGGGTCCTTCTTCTTGAGCTTCTAACAGGTAGAACACCAT 2110
| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 2094 CCGCTGATGTGTATAGCTTTGGGGTTCTTCTTCTCGAGCTTCTAACAGGTAGAACACCAT 2153
Query 2111 TCCAGGACCTTGTTCAAGAATATGGGTCAGATATCTCAAGATGGGTGCGTGCAGTGAGAG 2170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154 TCCAGGACCTTGTTCAAGAATATGGGTCAGATATCTCAAGATGGGTGCGTGCAGTGAGAG 2213
Query 2171 AGGAAGAGACTGAATCAGGCGAGGAACCGACTTCTTCAGGCAACGAAGCATCTGAGGAGA 2230
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2214 AGGAAGAGACTGAATCAGGTGAGGAACCGACTTCTTCAGGCAACGAAGCATCAGAGGAGA 2273
Query 2231 AACTTCAGGCACTTCTAAGTATTGCAACAGTTTGCGTAACCATTCAACCCGAAAACAGGC 2290
|||||||||||||| ||||||| ||||| ||||| || |||||||||||||| ||| |||
Sbjct 2274 AACTTCAGGCACTTTTAAGTATCGCAACGGTTTGTGTGACCATTCAACCCGATAACCGGC 2333
Query 2291 CTGTAATGAGAGAGGTGTTAAAGATGGTGAGGGATGCAAGGGCTGAAGCACCATTCTCGT 2350
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2334 CTGTGATGAGAGAGGTGTTGAAGATGGTGAGGGATGCAAGGGCTGAAGCACCATTCTCGT 2393
Query 2351 CTAACAGTAGTGAACATTCGCCCGGGAGATGGTCGGATACAGTTCAGAGTTTGCCAAGGG 2410
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2394 CTAACAGTAGCGAACATTCGCCCGGGAGATGGTCGGATACCGTTCAGAGCTTGCCAAGGG 2453
Query 2411 ATGATCAAGTGAGCATTTAGAGAAATTGGCTGGGCCTTCTTCATTGCTTTCCTAGAATGA 2470
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 2454 ATGATCAAGTGAGCATTTAGAGAAATTGGGTGGGCCTTCTTCATTGCTTTCATAGAATGA 2513
Query 2471 CACGTGTGATTCTTGAAGTAGGGTTCATAGTGTAAAGCTTCTTTTT-ATTTTGTAACGCC 2529
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2514 CACGTGTGATTCTTGAAGTAGGGTTCATAGTGTAAAGCTTCTTTTTTATTTTGTAACGCC 2573
Query 2530 ATTTTGATTCATCGACCTTGTAGGACTTGCATAAGATCTGTTGAATTG-GTAAAATGT-A 2587
||||||||||||||||||||||||||||||||||||||| |||||||| | | || |
Sbjct 2574 ATTTTGATTCATCGACCTTGTAGGACTTGCATAAGATCTATTGAATTGAG-ATGCTGGCA 2632
Query 2588 CTGAGTTAATTGAAGAACAGAAGAATCTTTTTT----CATTATTACCCtttttttAAGTA 2643
||||| | |||||||||||||||||||||||| |||| |||| |||| ||||| ||
Sbjct 2633 TTGAGT-AGTTGAAGAACAGAAGAATCTTTTTTTTTTCATTCTTACTCTTTCTTTAAATA 2691
Query 2644 ACAAGACATTCAATA 2658
||| |||||||||||
Sbjct 2692 ACACGACATTCAATA 2706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131989227033
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5