BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg471225

Length=515
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G10865.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   664    0.0  


> AT1G10865.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cytochrome 
c oxidase assembly protein PET191, N-terminal (InterPro:IPR018793); 
Has 241 Blast hits to 241 proteins in 124 species: 
Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 94; Plants 
- 38; Viruses - 0; Other Eukaryotes - 9 (source: NCBI 
BLink). | chr1:3614539-3616155 REVERSE LENGTH=538
Length=538

 Score =  664 bits (359),  Expect = 0.0
 Identities = 445/485 (92%), Gaps = 11/485 (2%)
 Strand=Plus/Plus

Query  1    TTGGAAAAACCTCTTTCTTTCGGGTCTCCGTCGACATTGATCCGTTTCTTACTCTCCGTC  60
            |||||||||||||  |||||||||||| ||||||||||||||||||| |||||| |||||
Sbjct  4    TTGGAAAAACCTCCGTCTTTCGGGTCTTCGTCGACATTGATCCGTTTTTTACTCACCGTC  63

Query  61   GCCGTTGAAATGGCGAAGTCTTGTAAGGGTCTTGCTGAAGAGCTTGTCAAATGTCTCAGT  120
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  64   GCCGTTGAAATGGCGAAGTCTTGTAAGGGCCTTGCTGAAGAGCTTGTCAAATGTCTCAGT  123

Query  121  GAATCGACCTGCGTCAAGGGCGAGAAACGGTCAATTAGGGACTGCGCAGGTGAAAAGAGC  180
            |||||||  || ||||||||||||||||| ||||||||||||||| | |||||||| |||
Sbjct  124  GAATCGATTTGTGTCAAGGGCGAGAAACGATCAATTAGGGACTGCACTGGTGAAAAAAGC  183

Query  181  CCATGTATACCAAGTGAGTGTATTGGCCTAAGAGAAACCTACTTCAACTGTAAAAGAGGA  240
            ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  184  CCATGTATACCGAGTGAGTGTGTTGGCCTAAGAGAAACCTACTTCAACTGTAAAAGAGGA  243

Query  241  CAGGTAGACATGAGAGCCAGGATTCGAGGAAACAAAGGCTACTAACGGAAGAGCACCTGC  300
            |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct  244  CAGGTAGACATGAGAGCCAGGATTCGAGGAAACAAAGGCTACTAACAGAAGGGCACCTGC  303

Query  301  -T-T--GTT-TCACACTTTCACTTTGTTGTTTCTGCGTTCTTTTTATCAATTCCTTTGAT  355
             | |  | | ||||| ||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct  304  ATATCCGATATCACATTTTCATTTTGTTGTTTTTGCGTTCTTTTTATCAAT-CCTTTGAT  362

Query  356  TTCTAATAGTTGGAATACAATCTGAAGG-AGCAATGCAACTTAGTTACTTGCCATGTCAA  414
            ||||||||||||||  ||||| |||||| | || ||||||||||||||||||||||||||
Sbjct  363  TTCTAATAGTTGGAGCACAATATGAAGGGA-CA-TGCAACTTAGTTACTTGCCATGTCAA  420

Query  415  TATCAAGTTAGGCTTGTTCCTATTCTCA-ACTTGATTTCCTTTCCTTTTTAAAGTTGTAT  473
            | ||||||||||||||||||||| || | |||||||||| ||||||  ||||||||||||
Sbjct  421  TGTCAAGTTAGGCTTGTTCCTATACT-ATACTTGATTTCTTTTCCTCCTTAAAGTTGTAT  479

Query  474  TACAT  478
            |||||
Sbjct  480  TACAT  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24614732030


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5