BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471231
Length=3923
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase ... 6242 0.0
AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicas... 2182 0.0
> AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase
(RECQl4A) | chr1:3647894-3655590 REVERSE LENGTH=3916
Length=3916
Score = 6242 bits (3380), Expect = 0.0
Identities = 3750/3927 (95%), Gaps = 31/3927 (1%)
Strand=Plus/Plus
Query 1 TTCTACGGCCTTGAGCTCAAGTCGGTGGTGACCATTTTATCCTATATTTCGTCTCTTCGA 60
|||||||||||||||||||||||||||||| |||||||||||| | |||||||| |||
Sbjct 16 TTCTACGGCCTTGAGCTCAAGTCGGTGGTGGCCATTTTATCCTGTGCTTCGTCTCGCCGA 75
Query 61 CTTCCCGGATTGTTTCGTCGCCGGAGTGTCAAAATCGACGTTACAGAAGCAAG-GACTCC 119
|||||| |||||||||| ||||||||||| |||| | |||||||||||||||| ||||||
Sbjct 76 CTTCCCTGATTGTTTCGCCGCCGGAGTGTTAAAAGCAACGTTACAGAAGCAAGAGACTCC 135
Query 120 ACTGAATCGAAAATTGACTGATCGATTGCGGTGTCAAGGGGAGTGAAAATTACTGGAACT 179
||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||||
Sbjct 136 ACTGAATCGAAAATTGACTGA---ATTGCGGTGTCAAAGGAAGTAAAAATTACTGGAACC 192
Query 180 TCTTCAGCATGTTAAACCTC-TGATTAATTCGAGTCAAATGAGTTGGAGTCATCTTCCTG 238
|||||| ||||||| ||| | |||||||||||| |||||||||| ||||||| || || |
Sbjct 193 TCTTCAACATGTTAGACC-CATGATTAATTCGAATCAAATGAGTAGGAGTCACCTCCCCG 251
Query 239 AAGTTCAGAAACCTAGAGGTCCTCAAACAAATTGGTCAGAACATGCAGAGGCACTCGAGA 298
|||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||
Sbjct 252 AAGTTCAGAAACCTAGAGGTCCTCAAACGAATTGGTCAGAACATGCAAAGGCGCTCGAGA 311
Query 299 GTTCATCGTCCGTGACTAAGTTTCTGAGCTCCAATGTCCTTTACGCTCTAGAAAGTCAAA 358
||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 312 GTTCATCATCGGTGACTAAGTTTCTGAGCTCCAATGTCCTTTACGCCCTAGAAAGCCAAA 371
Query 359 AGCCTAGAGATATGTCTGCAAGGTCAATTGCGTTTCCCAGTGTGAATGTGCATACTTTGG 418
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 AGCCTAGAGATATGGCTGCAAGGTCAATTGCGTTTCCCAGTGTGAATGTGCATACTTTGG 431
Query 419 CGCACCCACAAATTTCAAAGGCTTGGCGTGCTCTTTCAAGTCTCTCAATAAATAATGCCT 478
||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 432 CGCACCCGCAAATTTCAAAGGCTTGGCGTGCTCTTTCAAGTCTTTCAGTAAATAATACCT 491
Query 479 ACCTAAGACCTGGCGTTACTCCCCCCATTGATGATGGTGGCACCAATGGCTCATATTCTG 538
||||||||||||||||||||||||||||||||| | ||||||||||| ||| |||||||
Sbjct 492 ACCTAAGACCTGGCGTTACTCCCCCCATTGATG-T--TGGCACCAATGACTCTTATTCTG 548
Query 539 CAAGAGAGGGATCCACCGTGAAAGTTATATCTAGCACTGGTGGTTCTGTTTATTCGAGCA 598
|||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 549 CAAGAGAGAGATCTACCGCAAAAGTTATATCTAGCACTGGTGGTTCTGTTTATTCGAGCA 608
Query 599 GC-CGACAAAACCAAAATGCAATGAATGTTTCGGGAACTGGAAGATCCTTTCACAGTTTC 657
| |||| ||||| || ||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 609 -CTCGACCAAACCTAAGTGCAATGAATGTTTCAGGAACTGGAAGATCCTTTCATAGTTTC 667
Query 658 CCTTCCTCTGTACTTGGTGCTGATAAAATGA-TTGCTGAAAAGTTTCCACTGGGAAACGA 716
||||||||||| | ||||| ||||||||| | |||||||||||||||||| ||||||| |
Sbjct 668 CCTTCCTCTGTCCCTGGTGATGATAAAAT-AGTTGCTGAAAAGTTTCCACGGGGAAACAA 726
Query 717 CGAGGTCAGAGAATCAGAACCCAGTTTCACTCATTTAAATGGTGTGGAGAAGTCATTCAC 776
||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 727 TGAGATCAGAGAATCAGAACCCAGTTGCACGCATTTAAATGGTGTGGAGAAGTCATTCGG 786
Query 777 GAATTCTGCATTCCCACCTGAGCAGTTCGAATCTGGAAAAGCATGTCTTGGTGATATGGA 836
|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 787 GAATTCTGCATTCCCAGCTGAGCAGTTCGAATCTAGAAAAGCATGTCTTGATGATATGGA 846
Query 837 TGATGATGACATACTTAAGAATATTGATGTCGACCAAATTGTGATGGAACACTACCATTC 896
|||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 847 TGATGATGACATACTTGAGAATATTGACGTCGACCAAATAGTGATGGAACACTACCATTC 906
Query 897 GACAAGTACTCCTCAGCCATCAGTATCTAATTTTTCATTGAGAACTCCACCTGCCCCACC 956
|||||||| || ||||||||||| ||||||||||| ||||| | | || |||||
Sbjct 907 AACAAGTACCCCACAGCCATCAGTGTCTAATTTTTCGTTGAG-A----A-CT---CCACC 957
Query 957 TGTGGATAGAAGTGCTTCCAGATTAGAAGAAGAGTGCTGTCTGCCTCCTGAATTATGTTC 1016
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 958 TGTAGATAGAAGTGCTTCCAGATTAGAAGAAGAGTGCAATCTGCCTCCTGAATTATGTTC 1017
Query 1017 CAACTGTAGTCATGGAATAAAGTTAGGGCTTTGTCCAGAAGCTTCAACCCATGTGGAACA 1076
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1018 CAACTGTAGTCATGGAATAAAGTTGGGGCTTTGTCCAGAAGCTTCAACCCATGTGGAGCA 1077
Query 1077 GATGAAGGACGTGTTGCTTGCAATATCAAATGAACTCCTTGACGATGCTACTGACCTGAG 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GATGAAGGACGTGTTGCTTGCAATATCAAATGAACTCCTTGACGATGCTACTGACCTGAG 1137
Query 1137 TCCTTATCGTGTTGAACAGCTTCGTCAAGAGAGATTACAGCTGAAGAAACAAATTCAGCA 1196
|||| ||||||||| |||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct 1138 TCCTGATCGTGTTGGACAGCTCCGTCAAGAGAGGTTACGGCTGAAGAAACAAATTCAGCA 1197
Query 1197 GCTCGAGAACCATATCCGAGATAAAGAAAGGCAAAAATCTCAGTTTTCGTCATCTACAGC 1256
|||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct 1198 GCTCGAGAACCATATCCGAGATAAAGAAAGCCAAAAATCTCAGTTTTTGTCATCGACAGC 1257
Query 1257 TACTCGTACTTTCCAGTATGAAACACCTAAATCAACAAATTATAAAATGGATCAACCACA 1316
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TACTCGTATTTTCCAGTATGAAACACCTAAATCAACAAATTATAAAATGGATCAACCACA 1317
Query 1317 AACTGATTTTCGAGCACATCTAAGTGACCAAGGCAGATATGCCGGTGATAGCTGGAACAC 1376
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1318 AACTGATTTTCGAGCACATGTAAGTGACCAAGGCAGATATGCCTGTGATAGCTGGAACAC 1377
Query 1377 GCCAAGAGATTCTTCCTTTTCTGTTGATAGATATGGTCTTTCATCTGCTCCTGTAGAGAG 1436
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1378 GCCAAGAGATTCTTCCTTTTCTGTAGATAGATATGGTCTTTCATCTGCTCCTGTAGAGAG 1437
Query 1437 GGAACCATATGTTCCAAAGATTATTGACGTGACCTACACTGAAGGTTCAAACGACAAAAA 1496
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1438 GGAACAATATGTTCCAAAGATTATTGACGTAACCTACACTGAAGGTTCAAACGACAAAAA 1497
Query 1497 GTGGAGCAGTCGTGAATTTCCCTGGACAAGAAAACTGGAGGTTAATAACAAAAAAGTGTT 1556
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1498 ATGGAGCAGTCGTGAATTTCCCTGGACAAGGAAATTGGAGGTTAATAACAAAAAAGTGTT 1557
Query 1557 TGGAAATCATTCGTTTCGACCTAACCAGAGAGAAATTATCAATGCAACAATGAGTGGCTC 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TGGAAATCATTCGTTTCGACCTAACCAGAGAGAAATTATCAATGCAACAATGAGTGGCTC 1617
Query 1617 TGATGTTTTTGTTTTGATGCCAACTGGAGGAGGGAAGAGTTTGACATATCAGCTCCCCGC 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TGATGTTTTTGTTTTGATGCCAACTGGAGGAGGGAAGAGTTTGACATATCAGCTCCCCGC 1677
Query 1677 TCTGATCTGTGGAGGAATAACATTAGTCATTTCTCCACTTGTGTCGCTTATTCAAGACCA 1736
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1678 TCTGATCTGTGGAGGAATAACATTAGTAATTTCTCCACTTGTGTCTCTTATTCAAGACCA 1737
Query 1737 GATAATGAACCTATTGCAGGCCAATATACCGGCTGCTTCCCTAAGTGCCGGTATGGAATG 1796
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1738 GATAATGAACCTATTGCAGGCCAATATACCAGCTGCTTCCCTAAGTGCCGGGATGGAATG 1797
Query 1797 GGCTGAACAACTGAAGATCTTTCAGGAGCTGAATTCCGAGCATTCTAAGTACAAGTTGCT 1856
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GGCTGAACAACTAAAGATCTTTCAGGAGCTGAATTCCGAGCATTCTAAGTACAAGTTGCT 1857
Query 1857 ATATGTCACACCTGAAAAAGTGGCAAAAAGCGATTCTCTTTTGAGGCATCTGGAAAACTT 1916
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1858 ATATGTCACACCTGAAAAAGTAGCAAAAAGCGATTCTCTTTTAAGGCATCTGGAAAACTT 1917
Query 1917 AAATTCTCGTGGTTTGCTTGCTCGGTTTGTTATTGATGAAGCTCATTGTGTGAGCCAATG 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 AAATTCTCGTGGTTTGCTTGCTCGGTTTGTTATTGATGAAGCTCATTGTGTGAGCCAATG 1977
Query 1977 GGGGCATGACTTTCGACCAGACTACCAGAGTCTTGGTATTCTGAAGCAGAAATTTCCCAA 2036
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GGGACATGACTTTCGACCAGACTACCAGAGTCTTGGTATTCTGAAGCAGAAATTTCCCAA 2037
Query 2037 CATTCCTGTGTTAGCTTTAACAGCTACAGCAACAGCCAGTGTGAAAGAAGATGTGGTACA 2096
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 CATTCCCGTGTTAGCTTTAACAGCTACAGCAACAGCCAGTGTGAAAGAAGATGTGGTACA 2097
Query 2097 AGCCCTTGGCCTTGTTAACTGTGTCGTGTTCCGGCAAAGTTTTAATCGTCCAAATCTATG 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 AGCCCTTGGCCTTGTTAACTGTGTCGTGTTCCGGCAAAGTTTTAATCGTCCAAATCTATG 2157
Query 2157 GTATTCCGTTGTTCCCAAGACAAAAAAGTGTCTGGAAGACATCGACAAATTTATTAAGGA 2216
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 GTATTCTGTTGTTCCCAAGACAAAAAAGTGTCTGGAAGACATCGACAAATTTATTAAGGA 2217
Query 2217 AAACCATTTTGATGAATGTGGAATTATATATTGTCTTTCAAGAATGGACTGCGAAAAAGT 2276
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 AAACCATTTTGATGAGTGTGGAATTATATATTGTCTTTCAAGAATGGACTGCGAAAAAGT 2277
Query 2277 CTCTGAACGGTTGCAGGAGTTTGGTCATAAAACAGCATTCTACCATGGCAGTATGGAGCC 2336
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2278 CTCTGAACGGTTGCAGGAGTTTGGTCATAAAGCAGCATTCTACCATGGCAGTATGGAGCC 2337
Query 2337 TGAGAAACGTGCCTTTATACAGACACAATGGAGCAAGGACGAAATCAATATAATATGTGC 2396
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2338 TGAGCAACGTGCCTTTATACAGACACAATGGAGCAAGGACGAAATCAATATAATATGTGC 2397
Query 2397 TACTGTGGCATTTGGAATGGGAATCAACAAGCCTGATGTCCGCTTTGTTATTCATCACTC 2456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 TACTGTGGCATTTGGAATGGGAATCAACAAGCCTGATGTCCGCTTTGTTATTCATCACTC 2457
Query 2457 GCTCCCGAAGTCTATAGAAGGCTATCATCAGGAATGTGGTCGTGCTGGCAGGGATGGCCA 2516
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2458 GCTCCCAAAGTCTATAGAAGGCTATCATCAGGAATGCGGTCGTGCTGGCAGGGATGGCCA 2517
Query 2517 GCGGTCATCTTGTGTTTTGTATTACGGTTATGGCGACTATATACGAGTTAAGCATATGAT 2576
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2518 GCGGTCATCTTGTGTTTTATATTACGGTTATGGCGACTATATACGAGTTAAGCATATGAT 2577
Query 2577 TAGCCAAGGAGGAGTTGACCAAAGCCCCATGGCAACTGGGTATAATCGTGTAGCAAGTTC 2636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2578 TAGCCAAGGAGGAGTTGACCAAAGCCCCATGGCAACTGGGTATAATCGTGTAGCAAGTTC 2637
Query 2637 AGGGAGGATACTTGAAACAAATACCGAAAACCTTCTCCGCATGGTTAGCTACTGCGAAAA 2696
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2638 AGGGAGGTTACTTGAAACAAATACCGAAAACCTTCTCCGCATGGTTAGATACTGCGAAAA 2697
Query 2697 TGAGGTGGAATGCCGACGCTTCCTACAACTAGTGCATTTCGGGGAAAAATTCGATTCCAC 2756
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 2698 TGAGGTGGAATGCCGACGTTTCCTACAACTAGTGCATTTGGGGGAAAAATTCGATTCCAC 2757
Query 2757 AAACTGCaaaaaaaCGTGTGATAATTGTTGCAGTAGTCAGAGTTTGATTGACAAAGATGT 2816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2758 AAACTGCAAAAAAACGTGTGATAATTGTTGCAGTAGTCAGAGTTTGATTGACAAAGATGT 2817
Query 2817 CACCTTGATCACAAGGCAACTGGTTGAACTGGTGAAGCAAACAGGAGAAAGGTTTTCTTC 2876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2818 CACCTTGATCACAAGGCAACTGGTTGAACTGGTGAAGCAAACAGGAGAAAGGTTTTCTTC 2877
Query 2877 TGCTCATATTCTTGAAGTCTACAGAGGTTCCTTAAACCAAATGGTCAAGAAACACAGACA 2936
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2878 AGCTCATATTCTTGAAGTCTACAGAGGTTCCTTAAACCAAATGGTCAAGAAACACAGACA 2937
Query 2937 TGAGACTTTGCAGCTCCATGGAGTTGGAAAACATTTATCGAAAATTGAAGTCTCTCGTAT 2996
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2938 TGAGACTTTGCAGTTCCATGGAGCTGGAAAACATTTATCGAAAATTGAAGTCTCTCGTAT 2997
Query 2997 CTTACACTATCTCGTAACAGAGGACATTCTTGTGGAAGATGTTAGGAAAAGTGATATGTA 3056
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2998 CTTGCATTATCTCGTAACAGAGGATATTCTTGTGGAAGATGTTAGGAAAAGTGATATGTA 3057
Query 3057 TGGATCTGTGTCATCGTTGCTCAAGGTGAATAACGCAAAGGCTACCTTACTATTTTCTGG 3116
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 3058 TGGATCTGTGTCATCGTTGCTCCAGGTGAATAACGCAAAGGCTACCATACTATTTTCTGG 3117
Query 3117 AAGCCAGACTATAATGATGAAATTCCCTTCTTCTGTAAAAGTATTAAAGCCAAGTAAACA 3176
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3118 AAGCCAGACTATAGTGATGAAGTTCCCTTCTTCTGTAAAAGTATTAAAGCCAAGTAAACA 3177
Query 3177 GGGAGCAACCGCAGCAAAAGGTCCTCTAACATCAGAGAAGCAAAGTACTCTTCCACTTAC 3236
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3178 GGGGGCAACCGCAGCAAAAGGTCCGCTAACATCAGAGAAGCAAAGTACTCTTCCACTTAC 3237
Query 3237 AACAGAAGATGCTCCTCCAAAAGATTTGAATCTCTCTGCCAACATGTACACAGCCTTGAG 3296
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3238 AACAGAAGATGCTCCTCCAAAAGATGTGAATCTCTCTGCCAACATGTACACAGCCTTGAG 3297
Query 3297 GAAACTTCGTACAGCTCTTGTCAAAGAAGCCCCTGATGGTGTCATGGCATATCATATATT 3356
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3298 GAAGCTTCGTACAGCTCTTGTCAAAGAAGCCCCTGATGGTGTCATGGCATATCATATATT 3357
Query 3357 TATCAATTCAACGCTTCAGCAGATAAGCAGACGAATTCCCAGAACCAAAGAGGAACTCCT 3416
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 3358 CATCAATTCAACGCTTCAGCAGATAAGCAGACGGATACCCAGAACCAAAGAGGAACTCCT 3417
Query 3417 TGAAATCAATGGCCTTGGGAAGGCCAAAGTAAGCAAGTACGGTGATCGGTTGTTGGAAAC 3476
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3418 TGAAATCAATGGCCTTGGGAAGGCCAAAGTAAGCAAGTACGGTGATCAGTTGTTGGAAAC 3477
Query 3477 AATAGAAACAACGGTGAACGAGTACTACGGAACTAATAAGAAAGACTCCATCATCAGCAA 3536
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 3478 AATAGAAACAACGGTGAACGAGTACTATGGAACCAATAAGAAAGACTCCATCATCAGCAA 3537
Query 3537 CGACAGTCCCGATTCAGGGAAGAGGAGAAGAGACGAGAACATTAGTCCAAATGTAGCCGA 3596
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3538 CGATAGTCCCGATTCAGGGAAGAGAAGAAGAGACGAGAACATTAGTCCAAATGTAGCCGA 3597
Query 3597 GGATGATGATTTCGAAGTAAGCCCAAGCCAGTCCTGCAAAAAGACAGTGAGAAACAAAAG 3656
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3598 GGATGATGATTTCGAAGTAAGCCCAAGCCAGTCCTGCAAAAAAACAGTGAGAAACAAAAG 3657
Query 3657 CAATGAGGTTCTTCATGGTGAATGTGTAGATGGAGATAGAAGAGGCATGGTTATGGAGAA 3716
||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 3658 CAATGAGGTTCTTCATGGTGAATGTATAGATGGAGATAGAAGAGGCATGG--A-G----- 3709
Query 3717 GCTTGACTTTGATTTCAGAGACGAAGATGTGTCAGAGATACGACCGGAGGGAAGAGTATT 3776
||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3710 -CTTGATTTTGATTTCAAAGACGAAGATGGGTCAGAGATACGACCGGAGGGAAGAGTATT 3768
Query 3777 ACCTTGGTGAAGTTGTGACCACTGAAATTATAGTTGTAAAGAAATTTTGCTGTAATATTT 3836
||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 3769 ACCGTGGTGAAGTTGTGACCACTGAAATTTTAGTTGTAAAGAAATTTTGATGTAATATTT 3828
Query 3837 TGTTAACTTCTGTGGCCTACTCAATGTACCTTGATGTTCAGTAGATTGCAGAAACTATTT 3896
||||||||||| |||||||||||||||||||| || |||||||||||| |||||||| ||
Sbjct 3829 TGTTAACTTCTATGGCCTACTCAATGTACCTTAATTTTCAGTAGATTGAAGAAACTAGTT 3888
Query 3897 ATTAGATGCTGACTTCATTGATGATCT 3923
|||| ||||||||||| ||||||||||
Sbjct 3889 ATTAAATGCTGACTTCTTTGATGATCT 3915
> AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase
L4B | chr1:22430847-22438877 REVERSE LENGTH=3877
Length=3877
Score = 2182 bits (1181), Expect = 0.0
Identities = 2128/2581 (82%), Gaps = 81/2581 (3%)
Strand=Plus/Plus
Query 957 TGTGGATAGAAGTGCTTCCAGATTAGAAGAAGAGTGCTGTCTGCCTCCTGAATTATGTTC 1016
|||||||| | | |||||||| |||||||||| || ||||||||||| |||||||
Sbjct 973 TGTGGATATATTTACTTCCAGAAGAGAAGAAGAGCAAGGTTTGCCTCCTGAAATATGTTC 1032
Query 1017 CAACTGTAGTCATGGAATAAAGTTAGGGCTTTGTCCAGAAGCTTCAACCCATGTGGAACA 1076
|||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 1033 CAACTGTAGTCATGGAATAAAGCTAGGGCTTTGTCCTGAAGCTTCTACCCATGTGGAACA 1092
Query 1077 GATGAAGGACGTGTTGCTTGCAATATCAAATGAACTCCTTGACGATGC-TACTGACCTGA 1135
|||||||| | |||||||||||||||||||| |||| ||| || | || |||||||
Sbjct 1093 AATGAAGGATACGCTGCTTGCAATATCAAATGAAATCCTCGACAATACTTA-TGACCTGG 1151
Query 1136 GTCCTTATCGTGTTGAACAGCTTCGTCAAGAGAGATTACAGCTGAAGAAA-CAAATTCAG 1194
| ||| ||| |||||||||||||| |||| ||||||||| | |||| ||| ||||| |||
Sbjct 1152 GCCCTGATCATGTTGAACAGCTTCATCAAAAGAGATTACTGTTGAA-AAAGCAAATCCAG 1210
Query 1195 CAGCTCGAGAACCATATCCGA-GATAAAGAAAGGCAAAAATCTCAGT-TTTCGTCATCTA 1252
|||||||||| || ||||| | ||||||||||| |||||||||||| ||| || |||||
Sbjct 1211 CAGCTCGAGATCCTTATCC-ATAATAAAGAAAGGAAAAAATCTCAGTGTTTGGT-ATCTA 1268
Query 1253 CAGCTACTCGTACTTTC-CAGTATGAAACACCT-AAATCAACAAAT-TATAAAATGGATC 1309
| || ||| || | | ||||||||||||||| ||| |||||||| | | | ||| |
Sbjct 1269 TACCTTCTCATA-ATACTCAGTATGAAACACCTCAAA-CAACAAATCT-TGAGGTGGTTT 1325
Query 1310 AACCACAAACTGATTTTCGAGCACATCTAAGTGACCAAGGCAGATATGCCGGTGATAGCT 1369
| || || |||| || | | ||| ||| || |||||||||| || ||||| ||
Sbjct 1326 ATGGGCAGACAGATTCTCCAACTCATGTAAAAGAGCAAGGCAGATGTGTAACTGATAACT 1385
Query 1370 GGAACACGCCAAGAGATTCTTCCTTTTCTGTTGATAGATATGGTCTTTCATCTGCTCCTG 1429
|||| | ||||||||| | || ||||| || || |||| | ||||||||| | |||
Sbjct 1386 GGAATATGCCAAGAGACTATTTAGTTTCTAAAGAGAGGTATGATATTTCATCTGGTTCTG 1445
Query 1430 TAGAGAGGGAACCATATG-TTCCAAAGATTATTGACGTGACCT-ACACTGAAG-GTTCAA 1486
||||||||||| || || |||| || |||| || || | || | || | || ||||||
Sbjct 1446 AAGAGAGGGAACAATCTGTTTCC-GAGGTTATAGATGTCA-CTGATACCG-AGAGTTCAA 1502
Query 1487 ACGACAAAAAGTGGAGCAGTCGTGAATTTCCCTGGAC-AAGAAAACTGGAGGT-TAATAA 1544
| ||||||||||||| |||| |||| ||||| ||||| || ||| |||||||| | ||||
Sbjct 1503 ATGACAAAAAGTGGACCAGTAGTGATTTTCCTTGGACGAA-AAATCTGGAGGTCT-ATAA 1560
Query 1545 CAAAAAAGTGTTTGGAAATCATTCGTTTCGACCTAACCAGAGAGAAATTATCAATGCAAC 1604
|||| |||||||||||| || || |||||||| ||||| ||||| || || ||||| ||
Sbjct 1561 CAAATTAGTGTTTGGAAACCACTCATTTCGACCCAACCAAAGAGAGATCATTAATGCTAC 1620
Query 1605 AATGAGTGGCTCTGATGTTTTTGTTTTGATGCCAACTGGAGGAGGGAAGAGTTTGACATA 1664
||||||||| | |||||||||||||||||||||||| ||||| ||||| || || |||||
Sbjct 1621 AATGAGTGGTTGTGATGTTTTTGTTTTGATGCCAACCGGAGGGGGGAAAAGCTTAACATA 1680
Query 1665 TCAGCTCCCCGCTCTGA-TCTGTGGAGGAATAACATTAGTCATTTCTCCACTTGTGTCGC 1723
||||||||| ||||| | |||||| |||||||||||||||||||||||||||||| || |
Sbjct 1681 TCAGCTCCCTGCTCT-ACTCTGTGCAGGAATAACATTAGTCATTTCTCCACTTGTTTCAC 1739
Query 1724 TTATTCAAGACCAGATAATGAACCTATTGCAGGCCAATATACCGGCTGCTTCCCTAAGTG 1783
| ||||||||||||||||||||| |||||||| |||||||| | ||||||||| ||||||
Sbjct 1740 TCATTCAAGACCAGATAATGAACTTATTGCAGACCAATATATCTGCTGCTTCCTTAAGTG 1799
Query 1784 CCGGTATGGAATGGGCTGAACAACTGA-AGAT-CTTTCAGGAGCTGAATTCCGAGCATTC 1841
|||| |||||||||||||||||||| | |||| | |||||||||||| || ||| | ||
Sbjct 1800 CCGGAATGGAATGGGCTGAACAACT-AGAGATAC-TTCAGGAGCTGAGCTCTGAGAAGTC 1857
Query 1842 TAAGTACAAGTTGCTATATGTCACACCTGAAAAAGTGGCAAAAAGCGATTCTCTTTTGAG 1901
||| |||||||| || ||||| ||||| ||||||||||||||||| || || ||||| ||
Sbjct 1858 TAAATACAAGTTACTGTATGTAACACCAGAAAAAGTGGCAAAAAGTGAATCCCTTTTAAG 1917
Query 1902 GCATCTGGAAAACTTAAATTCTCGTGGTTTGCTTGCTCGGTTTGTTATTGATGAAGCTCA 1961
||| || |||| |||||| || ||| ||||||||||||| ||||||||||||||||||||
Sbjct 1918 GCACCTCGAAATCTTAAACTCCCGTAGTTTGCTTGCTCGATTTGTTATTGATGAAGCTCA 1977
Query 1962 TTGTGTGAGCCAATGGGGGCATGACTTTCGACCAGACTACCAGAGTCTTGGTATTCTGAA 2021
||||||||| || |||||||||||||||||||| ||||||||| |||||||| |||||||
Sbjct 1978 TTGTGTGAGTCAGTGGGGGCATGACTTTCGACCTGACTACCAGGGTCTTGGTGTTCTGAA 2037
Query 2022 GCAGAAATTTCCCAACATTCCTGTGTTAGCTTTAACAGCTACAGCAACAGCCAGTGTGAA 2081
|||||| ||||| |||||||| |||||||||| |||||||| |||||| |||| |||||
Sbjct 2038 GCAGAAGTTTCCAAACATTCCCATGTTAGCTTTGACAGCTACTGCAACAACCAGCGTGAA 2097
Query 2082 AGAAGATGTGGTACAAGCCCTTGGCCTTGTTAACTGTGTCGTGTTCCGGCAAAGTTTTAA 2141
||||||||| |||||||| || || || || |||||||| || |||||||||||||||||
Sbjct 2098 AGAAGATGTTGTACAAGCTCTCGGGCTGGTAAACTGTGTTGTTTTCCGGCAAAGTTTTAA 2157
Query 2142 TCGTCCAAATCTATGGTATTCCGTTGTTCCCAAGACAAAAAAGTGTCTGGAAGACATCGA 2201
||| || |||||||||||||| ||||||||||||||||| |||||| ||||||| || ||
Sbjct 2158 TCGCCCTAATCTATGGTATTCTGTTGTTCCCAAGACAAATAAGTGTTTGGAAGATATTGA 2217
Query 2202 CAAATTTATTAAGGAAAACCATTTTGATGAATGTGGAATTATATATTGTCTTTCAAGAAT 2261
||| ||||| |||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 2218 CAAGTTTATCCGGGAAAACCATTTTGATGAATGTGGCATCATTTATTGTCTTTCAAGAAT 2277
Query 2262 GGACTGCGAAAAAGTCTCTGAACG-GTTGCAGGAGTTTGGTCATAAAACAGCATTCTACC 2320
|||||||||||||||| | ||| | |||| || |||||| |||||| | || |||||||
Sbjct 2278 GGACTGCGAAAAAGTCACGGAA-GCATTGCGGGTGTTTGGCCATAAAGCGGCCTTCTACC 2336
Query 2321 ATGGCAGTATGGAGCCTGAG-AAACGTGCCTTTATACAGACACAATGGAGCAAGGACGAA 2379
||||||||||||| |||| | |||||||||||| |||||| ||||||||||||||| |||
Sbjct 2337 ATGGCAGTATGGATCCTG-GTAAACGTGCCTTTGTACAGAAACAATGGAGCAAGGATGAA 2395
Query 2380 ATCAATATAATATGTGCTACTGTGGCATTTGGAATGGGAATCAACAAGCCTGATGTCCGC 2439
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 2396 ATCAATATAATATGTGCTACAGTGGCATTTGGAATGGGAATCAATAAGCCTGATGTTCGT 2455
Query 2440 TTTGTTATTCATCACTCGCTCCCGAAGTCTATAGAAGGCTATCATCAGGAATGTGGTCGT 2499
||||| |||||||| || || || ||||| ||||||||||||||||||||||||||||||
Sbjct 2456 TTTGTAATTCATCATTCTCTACCAAAGTCCATAGAAGGCTATCATCAGGAATGTGGTCGT 2515
Query 2500 GCTGGCAGGGATGGCCAGCGGTCATCTTGTGTTTTGTATTACGGTTATGGC-GACTATAT 2558
||||| || || |||||| ||||||| ||||||||||||||| |||| | || |||||
Sbjct 2516 GCTGGTAGAGACGGCCAGAGGTCATCATGTGTTTTGTATTACAGTTACA-CTGATTATAT 2574
Query 2559 ACGAGTTAAGCATATGATTAGCCAAGGAGGAGTTGACCAAAGCCCCATGGCAACTGGG-T 2617
||||| |||||||||||||||||||||||| ||| |||| ||| ||| || |||| |
Sbjct 2575 TCGAGTGAAGCATATGATTAGCCAAGGAGGACTTGGCCAAGGCCAGATGAAAA-TGGGAT 2633
Query 2618 ATAATCGTGTAGCAAGTTCAGGGAGGATACTTGAAACAAATACCGAAAACCTTCTCCGCA 2677
||||| | |||||||||||||||||| || ||||| || || ||||||||||||||||
Sbjct 2634 ATAATTGCAAAGCAAGTTCAGGGAGGATGCTCGAAACGAACACGGAAAACCTTCTCCGCA 2693
Query 2678 TGGTTAGCTACTGCGAAAATGAGGTGGAATGCCGACGCTTCCTACAACTAGTGCATTTCG 2737
||||||| ||||| |||||||||||||| || ||||| ||| |||| ||||| ||||| |
Sbjct 2694 TGGTTAGTTACTGTGAAAATGAGGTGGATTGTCGACGTTTCTTACAGCTAGTTCATTT-G 2752
Query 2738 GG-GAAAAATTCGATTCCACAAACTGCaaaaaaaCGTGTGATAATTGTTGCAGTAGTCAG 2796
|| |||||||| ||||| |||||||||||||| || ||||||||||||| ||| || ||
Sbjct 2753 GGAGAAAAATTTGATTCGACAAACTGCAAAAACACATGTGATAATTGTTCCAGCAG-CAA 2811
Query 2797 AGTTT-GATTGACAAAGATGTCACCT-TGATCACAAGGCAACTGGTTGAACTGGTGAAGC 2854
| ||| ||||||||||||||| || | |||| ||||||||||||| | |||||| ||||
Sbjct 2812 AATTTTGATTGACAAAGATGTAAC-TGTGATTGCAAGGCAACTGGTGGCACTGGTTAAGC 2870
Query 2855 AAACAGGAGAAAGGTTTTCTTCTGCTCATATTCTTGAAGTCTACAGAGGTTCCTTAAACC 2914
|||||||||||| ||||| || ||||||||| | ||| ||||||| || ||||||||||
Sbjct 2871 TAACAGGAGAAAGATTTTCGTCAGCTCATATTGTAGAAATCTACAGGGGATCCTTAAACC 2930
Query 2915 AAAT-GGTCAAGA-AACACAGACATGAGACTTTGCAGCTCCATGGAGTTGGAAAACATTT 2972
| | |||||||| || ||||||| || |||||||| ||||| |||| ||||| |||||
Sbjct 2931 AG-TCGGTCAAGAGAA-ACAGACAAGACACTTTGCACCTCCACGGAGCAGGAAAGCATTT 2988
Query 2973 ATCGAAAATTGAAGTCTCTCGTATCTTACACTATCTCGTAACAGAGGACATTCTTGTGGA 3032
| | |||| ||||| ||||||||| || ||||| || || |||||||| ||||| | ||
Sbjct 2989 AACTAAAAGTGAAGCCTCTCGTATTTTGCACTACCTTGTGACAGAGGATATTCTCGCAGA 3048
Query 3033 AGATGTTAGGAAAAGTGATA-TGTATGGATCTGTGTCATCGTTGCTCAAGGTGAATA-AC 3090
| ||||| |||||||| | ||||||||||||| || || ||||| |||||||| | |
Sbjct 3049 GGGTGTTAAAAAAAGTGA-ACTGTATGGATCTGTATCGTCATTGCTGAAGGTGAACAGAT 3107
Query 3091 GCAAAGGCTACCTTACTATTTTCTGGAAGCCAGACTATAATGATGAAATTCCCTTCTTCT 3150
||||||| ||| || || |||||| |||||| ||||| |||| ||| ||||| |
Sbjct 3108 -CAAAGGCCGCCTCGCTCTTATCTGGAGGCCAGAGTATAACAATGAGATTTCCTTCGACC 3166
Query 3151 GTAAAAGTATTAAAGCCA-AGTAAA-C-AGGGAGCAAC-CGCAGCAAAAGGTCCTCTAAC 3206
||||||| | ||||| | || ||| | | ||||| | ||||||||| ||| ||
Sbjct 3167 ATAAAAGTGTCAAAGC-AGAGCAAATCCAC--AGCAAATC-CAGCAAAAGTTCCACT--- 3219
Query 3207 ATCAGAGAAGCAAAGTACTCTTCCACTTACAACAGAAGATGCTCCTCCAAAAGATTTGAA 3266
| | || |||| ||| |||||| | ||| | | | ||| || | | |||||| |||
Sbjct 3220 -T-A-AG---CAAACTACCCTTCCAATGGCAA-A-A-GCTGC-CC-C-ACAAGATTCGAA 3267
Query 3267 TCTCTCTGCCAACATGTACACAGCCTTGAGGAAA-CTTCGTACAGCTCTTGTCAAAGAAG 3325
|||||| | || ||| |||||||||| ||| ||||| || | | |||||||||||
Sbjct 3268 TCTCTCCGGCATTTTGTTGACAGCCTTGAA-AAATCTTCGGACTGATATTGTCAAAGAAT 3326
Query 3326 CCCCTGATGGT-GTCATGGCATATCATATATTTATCAATTCAACGCTTCA-GCAGATAAG 3383
| || ||| | |||||||||||||||||||| |||| | |||||| | | |||||||
Sbjct 3327 CGCCAGATT-TAGTCATGGCATATCATATATTCGGCAATGCGACGCTTAAAG-AGATAAG 3384
Query 3384 CAGACGAATTCCCAGAACCAAAGAGGAACTCCTTGAAATCAATGGCCTTGGGAAGGCCAA 3443
| |||| |||||||||||||||||||||||||||| |||||||| || || || |||||
Sbjct 3385 TAAACGACTTCCCAGAACCAAAGAGGAACTCCTTGATATCAATGGTCTAGGAAAAGCCAA 3444
Query 3444 AGTAAGCAAGTACGGTGATCGGTTGTTGGAAACAATAGAAACAACGGTGAACGAGTACTA 3503
|| ||||| ||||| |||||||| |||||||| ||||| |||| | ||||| ||||
Sbjct 3445 GGTGAGCAAATACGGAGATCGGTTATTGGAAACCATAGATTCAACCATCAACGACCACTA 3504
Query 3504 C 3504
|
Sbjct 3505 C 3505
Score = 87.9 bits (47), Expect = 7e-16
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 3542 GTCCCGATTCAGGGAAGAGGAGAAGAGACGAGAACATTAGTCCAAATGTAGCCGAGGATG 3601
|||||| |||||||||||||||||||||||||||| ||| ||| |||||||| || ||||
Sbjct 3513 GTCCCGGTTCAGGGAAGAGGAGAAGAGACGAGAACGTTAATCCGAATGTAGCAGAAGATG 3572
Query 3602 ATGAT 3606
|||||
Sbjct 3573 ATGAT 3577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 195450409928
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5