BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471233
Length=2246
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10950.1 | Symbols: TMN1, AtTMN1 | transmembrane nine 1 | ch... 3679 0.0
> AT1G10950.1 | Symbols: TMN1, AtTMN1 | transmembrane nine 1 |
chr1:3659209-3663984 FORWARD LENGTH=2245
Length=2245
Score = 3679 bits (1992), Expect = 0.0
Identities = 2170/2254 (96%), Gaps = 19/2254 (1%)
Strand=Plus/Plus
Query 1 TATTACCCAAAATCTCTACAAAGTG-AAACACTGAGCTGAGGATCTCGCTCTCTCCTCGA 59
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1 TATTACCCAAAATCTCTACAAAGTGAAAACACTGAGCTGAGGATCTCGCTCTCT-CTCGA 59
Query 60 TTGGTATCTCTCCCTCCGTCCTTCCTCAGATCTGATCGTCCGCCGGTTTTCACGATGCCG 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTGGTATCTCTCGCTCCGTCCTTCCTCAGATCTGATCGTCCGCCGGTTTTCACGATGCCG 119
Query 120 TCTTCCTCCT---CCGCCGTCGTCGTGTTTCTTCTTCTTGTTTTCCTTCTCACTCCTACG 176
|||||||||| |||||||| ||||||| |||||||| |||| ||||||||||||||||
Sbjct 120 TCTTCCTCCTCCGCCGCCGTCCTCGTGTTCCTTCTTCTCGTTTCCCTTCTCACTCCTACG 179
Query 177 TTCGCATCTGATTCAGATCACAAGTATCAAGCCGATGAGCAGGTTACCCTGTGGGTGAAC 236
|||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||| |||
Sbjct 180 TTCGCATCCGATTCAGATCACAAGTATCAAGCCGAGGAGCAGGTCACCCTATGGGTAAAC 239
Query 237 AAAGTTGGCCCATATAACAATCCACAAGAAACATACAACTATTACAGTCTTCCATTTTGC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAGTTGGCCCATATAACAATCCACAAGAAACATACAACTATTACAGTCTTCCATTTTGC 299
Query 297 CGCCCATCTGGAAACAATGTTCACAAATGGGGTGGTCTTGGTGAAGTTCTTGGTGGAAAT 356
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 CGCCCATCTGGAAACAATGTTCACAAATGGGGTGGTCTTGGTGAAGTTCTAGGTGGAAAT 359
Query 357 GAGCTGATTGACAGTGAGATTGCGATAAAGTTCTTGAAGAATGTCGATAGAAATGTCATC 416
||||||||||||||||||||||||||||| ||| ||||||||||||| |||| |||||||
Sbjct 360 GAGCTGATTGACAGTGAGATTGCGATAAAATTCATGAAGAATGTCGAGAGAAGTGTCATC 419
Query 417 TGTCCGCTTGAACTCGATGAAGCTAAGGTCAAGCATTTCAAAGATGCAATTGAATCTAGC 476
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 420 TGTCCGCTTGAACTCGATGAAGCTAAGGTCAAGCATTTTAAAGATGCCATTGAATCTAGC 479
Query 477 TACTGGTTTGAATTTTTTATGGATGATCTACCTTTGTGGGGCTTTGTGGGTGAGCTGCAT 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACTGGTTCGAATTTTTTATGGATGATCTACCTTTGTGGGGCTTTGTGGGTGAGCTGCAT 539
Query 537 CCAGACAAAAATAGTGAAAACGGCAAGCATGTCCTCTACACACATAAGAACATTGTTGTC 596
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 540 CCTGACAAAAATAGTGAAAACGGCAAGCATGTTCTTTACACACATAAGAACATTGTTGTC 599
Query 597 AAATACAACAAAGACCAGATCATTCATGTTAATCTCACTCAAGACAACCCAAGGCCATTG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAATACAACAAAGACCAGATCATTCATGTTAATCTCACTCAAGACAACCCAAGGCCATTG 659
Query 657 GAAGCAGGGaaaaaaaTGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCACA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAAGCAGGGAAAAAAATGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCACA 719
Query 717 TTTGCTCGCCGCTTTGACGTCTATCTGGATTATCCGTTCTTTGAACACCAGATCCACTGG 776
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTGCTCGCCGCTTTGACGTATATCTGGATTATCCGTTCTTTGAACACCAGATCCACTGG 779
Query 777 TTCTCCATCTTTAACTCGTTCATGATGGTTATTTTCCTCACTGGTTTGGTCTCAATGATA 836
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 780 TTCTCCATCTTTAACTCGTTCATGATGGTTATTTTCCTCACCGGTTTGGTCTCAATGATA 839
Query 837 TTGATGAGGACTCTAAGAAATGATTATGCAAAGTATGCTCGAGAAGATGATGATCTTGAG 896
|||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 840 TTGATGAGGACTCTCAGAAATGATTATGCGAAGTATGCTAGAGAAGATGATGATCTTGAG 899
Query 897 AGCTTGGAACGGGATGTAAGTGAAGAATCTGGTTGGAAACTTGTACATGGAGATGTGTTC 956
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 900 AGCTTGGAACGGGATGTAAGTGAAGAATCTGGTTGGAAACTTGTGCATGGAGATGTGTTC 959
Query 957 AGGCCAGCAAGTAGTCTAGTTCTACTCTCAGCTGTAGTTGGCACAGGTGCACAGTTGGCG 1016
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 960 AGGCCAGCAAGTAGTCTAGTTCTGCTCTCAGCGGTAGTTGGTACAGGTGCACAGTTGGCG 1019
Query 1017 TTACTGGTTCTTCTTGTCATATTAATGGCCATAGTGGGAACTCTCTACGTTGGGAGAGGA 1076
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1020 TTGCTGGTTCTTCTTGTCATATTAATGGCCATCGTGGGAACTCTCTACGTTGGGAGAGGA 1079
Query 1077 GCAATCGTCACAACTTTCATAGTTTGCTATGCTCTGACTTCCTTTGTCTCTGGTTACGTG 1136
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 1080 GCAATCGTCACAACTTTCATAGTGTGCTATGCTCTGACTTCTTTTGTCTCTGGTTATGTG 1139
Query 1137 AGCGGTGGAATGTACTCAAGAAGCGGGGGTAAACATTGGATCAAGTGCATGGTCCTCACA 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGCGGTGGAATGTACTCAAGAAGCGGGGGTAAACATTGGATCAAGTGCATGGTCCTCACG 1199
Query 1197 GCTTCTCTCTTTCCCTTTTTGTGCTTCGGAATTGGCTTTCTCCTAAACACAATTGCCATA 1256
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GCTTCTCTCTTCCCCTTTTTGTGCTTCGGAATTGGCTTTCTCCTAAACACAATTGCCATA 1259
Query 1257 TTCTATGGATCTCTTGCGGCTATTCCTTTTGGGACAATGGTGGTTGTGTTTGTAATTTGG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTCTATGGATCTCTTGCGGCTATTCCTTTTGGGACAATGGTGGTTGTGTTTGTAATTTGG 1319
Query 1317 GGGTTCATTTCCTTCCCCTTAGCCCTCCTCGGAACGGTTGTTGGAAGAAACTGGAGCGGT 1376
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1320 GGGTTCATTTCCTTCCCCTTAGCCCTCCTCGGAACGGTTGTTGGAAGAAATTGGAGCGGT 1379
Query 1377 GCTCCTAACAATCCATGCCGTGTGAAGACCATTCCACGTCCAATTCCTGAGAAAAAATGG 1436
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1380 GCTCCTAACAATCCATGCCGTGTGAAGACTATTCCACGTCCAATCCCTGAGAAAAAATGG 1439
Query 1437 TACTTGACTCCATCAGTTGTCTCCCTGATGGGGGGTTTGCTACCCTTTGGAAGCATCTTC 1496
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TACTTGACTCCATCAGTCGTCTCCCTGATGGGGGGTTTGCTACCCTTTGGAAGCATCTTC 1499
Query 1497 ATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGGTCTACTATGTGTATGGA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 ATTGAGATGTACTTTGTCTTCACATCCTTCTGGAATTACAAGGTCTACTATGTGTATGGA 1559
Query 1557 TTCATGTTACTAGTTTTTGTGATTCTCGTCATAGTGACGGTGTGTGTGACAATCGTGGGT 1616
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TTCATGTTACTGGTTTTTGTGATTCTCGTCATAGTGACGGTGTGTGTGACAATCGTGGGT 1619
Query 1617 ACATACTTCCTGCTGAATGCAGAGAACTATCACTGGCAATGGACTTCATTTTTCTCTGCT 1676
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1620 ACATATTTCCTGCTGAATGCAGAGAACTATCACTGGCAGTGGACTTCATTTTTCTCTGCT 1679
Query 1677 GCTTCGACGGCTGTCTATGTCTACTTATACTCCATCTATTACTACTACGTAAAGACCAAG 1736
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GCTTCGACGGCTGTCTATGTGTACTTATACTCCATCTATTACTACTACGTAAAGACCAAG 1739
Query 1737 ATGTCCGGATTCTTCCAGACAAGCTTCTACTTTGGATACACCATGATGTTCTGTCTCGGC 1796
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1740 ATGTCCGGATTCTTCCAGACAAGCTTCTACTTTGGATACACCATGATGTTCTGTCTTGGC 1799
Query 1797 CTTGGAATCCTTTGCGGAGCTGTTGGATACTTGGGATCAAATCTGTTTGTAAGGAGGATC 1856
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1800 CTTGGAATCCTTTGCGGAGCTGTTGGCTACCTGGGATCAAATCTGTTTGTAAGGAGGATC 1859
Query 1857 TACAGAAACATCAAGTGCGACTAGAAGAGGTAAACGGGaaaaaaaGAGAGAAAACAAATC 1916
||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||
Sbjct 1860 TACAGAAACATCAAGTGCGACTAGAAGAGGTAAACGG-AAAAAAAGAGA-AAA-CAAATC 1916
Query 1917 CAATTAGAAGAAAGCTTCTTATGAGGTTATATATTATATTGAAGGAACATAATATAttct 1976
|||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1917 CAATTAGAAGGAAGCT-CTTACGAGGTTATATATTATATTGAAGGAACATAATATATTCT 1975
Query 1977 tcaatgggggcttcttgtctcttcatcttcttttttcttcttcttttttttttttCTTTC 2036
||||||||||||| |||||||||||||||||| ||| || || ||||||||||||||| |
Sbjct 1976 TCAATGGGGGCTTTTTGTCTCTTCATCTTCTTCTTT-TT-TT-TTTTTTTTTTTTCTT-C 2031
Query 2037 CCATTTTGGTAAGTGAATTGTTCTCCTTAGATTAGAATCGAGTGGGTGTACTATACTACT 2096
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2032 CCATTTTGGTAAGTGAATTGTTCTCTTTAGATTAGAATCGAGTGGGTGTACTATACTACT 2091
Query 2097 ACTACCTGTAATCTTTTTCCTTATCtttttttGGTTCATATTTACTTCACCCTCACCTAG 2156
|||||||||||||||||||| |||||||||||||| | |||||||||||| |||| |||
Sbjct 2092 ACTACCTGTAATCTTTTTCCCTATCTTTTTTTGGT-CGTATTTACTTCACT-TCACTTAG 2149
Query 2157 ATCATTGAATATGTTGTCCTCTTGCAGCAATTGGATGA---A-TTATTGTCATATGTTGG 2212
||||||||||||| |||| ||| | ||||||||||| | | |||||||||| ||||||
Sbjct 2150 ATCATTGAATATGGTGTCATCTAGGAGCAATTGGATCATTTAATTATTGTCATGTGTTGG 2209
Query 2213 GACTTGGGAGACGTTAACTCTCGTTCATGGTGTT 2246
| |||||||| |||||||||||||||||||||||
Sbjct 2210 GCCTTGGGAGTCGTTAACTCTCGTTCATGGTGTT 2243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111445209900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5