BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471234
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10960.1 | Symbols: ATFD1, FD1 | ferredoxin 1 | chr1:3664386... 1007 0.0
> AT1G10960.1 | Symbols: ATFD1, FD1 | ferredoxin 1 | chr1:3664386-3665039
FORWARD LENGTH=654
Length=654
Score = 1007 bits (545), Expect = 0.0
Identities = 623/659 (95%), Gaps = 12/659 (2%)
Strand=Plus/Plus
Query 1 CATTTTCACAAAGCCACA-C--CT-ACTCACAGAATCTGTAGAATCATCATCATCTTTCA 56
|||||||||||||||||| | || ||||||| ||||||||| | |||||||||||
Sbjct 3 CATTTTCACAAAGCCACACCAACTCACTCACAAAATCTGTAG----A--ATCATCTTTCA 56
Query 57 ACAATGGCTTCCACTGCTCTCTCCAGCGCAATCGTAAGCACCTCTTTCCTCCGCCGTCAA 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 ACAATGGCTTCCACTGCTCTCTCCAGCGCAATCGTAAGCACCTCTTTCCTCCGCCGTCAA 116
Query 117 CAGACACCAATCAGCCTCAGATCTCTCCCGTTGGCCAACACACAATCTATCTTCGGCCTC 176
||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 117 CAGACACCAATCAGCCTCAGATCCCTCCCGTTTGCCAACACACAATCTCTCTTCGGCCTC 176
Query 177 AAATCCTCCACCGCTCGCGGCGGCCGCATCACTGCCATGGCTACCTACAAGGTCAAGTTC 236
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 177 AAATCTTCCACCGCTCGCGGCGGCCGCGTCACGGCCATGGCTACCTACAAGGTCAAGTTC 236
Query 237 ATCACACCTGAGGGAGAACAAGAAGTGGAGTGTGAAGAAGATGTCTACGTCCTCGACGCT 296
||||||||||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 237 ATCACACCTGAGGGAGAACAAGAGGTCGAATGCGAAGAAGATGTCTACGTCCTCGACGCT 296
Query 297 GCTGAGGAAGCCGGAATCGACTTGCCGTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGC 356
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 297 GCTGAGGAAGCCGGACTCGACTTGCCCTACTCATGCCGTGCCGGTTCTTGCTCAAGTTGC 356
Query 357 GCCGGGAAAGTCGTCTCTGGCTCCATTGACCAGTCGGAACAGAGCTTCTTAGACGATGAC 416
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 357 GCCGGGAAAGTCGTCTCTGGTTCTATTGACCAGTCGGACCAGAGCTTCTTAGACGATGAA 416
Query 417 CAGATGAGCGAAGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGATGTCGTCATC 476
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CAGATGAGTGAGGGCTATGTCTTGACCTGTGTGGCTTATCCGACTTCTGATGTCGTCATC 476
Query 477 GAAACCCACAAAGAAGAAGCCATTATGTAAAATGTTTAA-GCTTCTTGATGAATTTCATT 535
||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 477 GAAACCCACAAAGAAGAAGCCATTATGTAAAAT-TTTAAAGCTTTTTGATGAATTTCATC 535
Query 536 AAAAGAGAAATAACTTGATGTTTAAGTCATCTCTCTTGTTACTTCGCTAATGTTGCCCTA 595
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AAAAGAGAAATTACTTGATGTTTAAGTCATCTCTCTTGTTACTTCGCTAATGTTGCCCTA 595
Query 596 ATTTGGCTCATCCTTTTAAAAGATCAATCAATAATAACCAATTTCAATGTTTTGTTCTT 654
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 596 ATTTGGCTCATCCTTTTATAAGATCAATCAATAATAACAAATTTCAATGTTTTGTTCTT 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5