BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471236
Length=1653
Score E
Sequences producing significant alignments: (Bits) Value
AT1G10980.1 | Symbols: | Lung seven transmembrane receptor fam... 1365 0.0
> AT1G10980.1 | Symbols: | Lung seven transmembrane receptor family
protein | chr1:3667248-3669902 REVERSE LENGTH=1915
Length=1915
Score = 1365 bits (739), Expect = 0.0
Identities = 978/1086 (90%), Gaps = 45/1086 (4%)
Strand=Plus/Plus
Query 600 AGTTCTACGCCTCCATGCTTTTGGCTTATGTGGTTCTTGGCCTACTTTGGTTTCCACAAG 659
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 746 AGTTCTACGCCTCCATGCTTTTGGCTTACGTGGTTCTTGGCCTAGTTTGGTTTCCACAAG 805
Query 660 TTGCTCAGTATTGGAAGGATGGAATCCAGTTGCACGGTCATATCAGC-TGGTAATTGTAT 718
|||||||||||||||| ||||||||||||||||| ||||||||| | | ||||||| ||
Sbjct 806 TTGCTCAGTATTGGAAAGATGGAATCCAGTTGCATAGTCATATCAACTTTGTAATTGCAT 865
Query 719 TTACCATGGGTGAATTGGCCTTCCTGTACTTTGACTTCGCTTATCTCGACTCAGCTGGTA 778
||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||
Sbjct 866 TTACCATGGGTGAATTGGCCTTCCTCTACCTTGACTTCGTTTATCTCGACTCAGCTGGTA 925
Query 779 CAAGTCCTATGGAGGTTACAGTATGGGCAATAACCCTTTCTTCCATGAGGAAGGCACTCT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CAAGTCCTATGGAGGTTACAGTATGGGCAATAACCCTTTCTTCCATGAGGAAGGCACTCT 985
Query 839 CCCGGCTTCTACTGTTGGTCATATCTTCAGGCTATGGGATAGTGAGACCTACCCTTGGTG 898
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 986 CCCGGCTTCTACTGTTGGTCATATCTTCAGGGTTTGGGATAGTGAGACCTACCCTAGGTG 1045
Query 899 GCATAACATTGAGGATGCTTCTTATTGGTGTCCTATGCTTTGTTATAAGCGAATCTCTCG 958
|||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||
Sbjct 1046 GCATAACATTGAAGATGCTTCTTATTGGTGTCTTATGCTTTGTTATAAGTGAATCCCTCG 1105
Query 959 GGTTGGCTATGCAATTTGGGAA-ATTTTCTGAAAATGGAATGACTTTCCTAATGCTCTCT 1017
|||||||||||||||||||||| || | ||||||||||||||| || | |||||||||||
Sbjct 1106 GGTTGGCTATGCAATTTGGGAACATCT-CTGAAAATGGAATGAATTACTTAATGCTCTCT 1164
Query 1018 TGGGCTATACTGGAAACTTGCTTTATCCAGTTGATTTTCAGATCCTTGTGGAAAACGCTT 1077
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1165 TGGGCTATACTGGAAACTTGCTTTATCCAGTGGATTTTCAGATCCTTGTCGAAAACGCTT 1224
Query 1078 AAGAAGCTTAAGCTGAATAAGAGGAACATTGCTAAGCTGCAGCTCTACAAGAAGTTTGCA 1137
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1225 AAGAAGCTCAAGCTGAATAAGAGGAACATTACTAAGCTGCAGCTCTACAAGATGTTTGCA 1284
Query 1138 ACTATGCTTGTAACCATGATGGTGCTCAATTTTGCCTGGTTTTATGTGCAGGTATATGTC 1197
||| ||||||||| |||| | ||||||| |||||||||| |||||||| |||||||| ||
Sbjct 1285 ACTGTGCTTGTAATCATGGTTGTGCTCAGTTTTGCCTGGATTTATGTGGAGGTATATCTC 1344
Query 1198 TACAACTCTCTA-AGTGAGTTTTGGCAAGTGAAGTGGAT-GATCCCAACACTTTGGTAC- 1254
|||| ||| || ||| |||||||| ||||||||||||| | ||| |||||||||||||
Sbjct 1345 TACAGCTC-CTTGAGTCAGTTTTGGAAAGTGAAGTGGATTGTTCC-AACACTTTGGTACA 1402
Query 1255 TCTCTTTCTTATGCACTATTGGTACTGATTTGCCTCTTTTGGCCTCCATCGGAAAAACCA 1314
|| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 TC-CTTTCTTATGCAATGTTGGTACTGATTTGCCTCTTTTGGCCTCCATCGGAAAAACCA 1461
Query 1315 ATGAGGTACCTATACGTAGCTGACATGGTGGAAGAGGCTGAAGAAGA---TGATCTCTCC 1371
|||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct 1462 ATGAGGTACCTATACGTAGCTGACATGGAGGAAGAGACTGAAGAAGAAGATGATCTCTCC 1521
Query 1372 GTTGCAGAAACCGGTATGAACGTAACAAAGGCTGAAGATGGCGATGTTGAGAGGTATGAA 1431
|||||||||||||||||||| ||||||||||||| | ||| | | ||| | |||
Sbjct 1522 ACTGCAGAAACCGGTATGAACGCAACAAAGGCTGAATA---CGA-GA-G-GAG-T--GAA 1572
Query 1432 AGGAAGACTCTTCTGGAAGCATTCATCATATTGCTTGGGAATTTACCAGGGGAGAGGTGA 1491
|||||||| || ||||||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct 1573 AGGAAGACCCTGCTGGAAGCATTCATCCTATTGCTTGGGAATATACCAGGGGAGAAGTGA 1632
Query 1492 AAC-CCCCATCTTACAAAGTTACCGTACTTTTAGCTAAAGCTGCCTGCTAGTCATCCATT 1550
||| |||||||||||||||||||||| ||||||||| ||||||||| || |||||| ||
Sbjct 1633 AACTCCCCATCTTACAAAGTTACCGTCCTTTTAGCTTAAGCTGCCTACTTCTCATCCTTT 1692
Query 1551 TTCAGCTTAAGCTACTCCTAA-C--C-T---A--C----GGCTTTAAGtttttttG-AAC 1596
||||||||||||||||||||| | | | | | |||||||||||||||| |||
Sbjct 1693 TTCAGCTTAAGCTACTCCTAATCATCCTTTTAAACCTACGGCTTTAAGTTTTTTTTTAAC 1752
Query 1597 TCCTATAATCTTCT-C--T-G-CA-G--T-AATCGGATTTTCTGTTTCATGAACTTGTTG 1647
|| ||||||||||| | | | | | | ||||||||||||||||||||||||||||||
Sbjct 1753 TCATATAATCTTCTGCAGTAGACTTGACTTAATCGGATTTTCTGTTTCATGAACTTGTTG 1812
Query 1648 GTAGTG 1653
||||||
Sbjct 1813 GTAGTG 1818
Score = 856 bits (463), Expect = 0.0
Identities = 539/575 (94%), Gaps = 8/575 (1%)
Strand=Plus/Plus
Query 34 TTGATCCACGCAGCTGACGGGTCGATTCACGAGTACAACAAC--C-AAGACTTCACCAAA 90
||||| |||||||||||||| ||||||||||| ||||||||| | || ||||||||||
Sbjct 136 TTGATTCACGCAGCTGACGGCTCGATTCACGACTACAACAACAGCGGAGGCTTCACCAAA 195
Query 91 ATCGCAAATGCTCGCTACTTTTTTGGTGGTTCCGAAGGAATCTATGGTTCTGAGTTTCTG 150
||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 196 ATCGCCAATGCTCGCTACTTCGTTGGTGGTTCTGAAGGAATCTATGGTTCTGAGTTTCTG 255
Query 151 GATGTTCATC---CTTCTTCTGATACACCTCTGCTCAAGGGGAACTCCTTCATCAGGTTT 207
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 256 GATGTTCATCATGCTTCTTCTGATACACCTCTGCTCAAGGGAAACTCCTTCATCAGGTTT 315
Query 208 GATGATATCACTTTTGTAAGAACCAAGGAATCTGCTAGCAAGCAGAATTCCACTCAGGTG 267
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 316 GATGATATCACTTTCGTAAGAACCAAGGAATCTGCTAGCAAGCAGAATTCTACTCTGG-C 374
Query 268 A-CTGCAGGCTTGGTTGAAGCGATACTGTTTGAGGTGAAGCAGCAAGACAGAGTTGGTGG 326
| ||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 375 AGCTGCAGGCTTGGTGGAAGCGATACTGTTTGAGGTGAAGCAGCGAGATAGAGTTGGTGG 434
Query 327 ATCTTTTTTCAAATCTGAGGACATGTGTTGTACGCCAAAACTTGCAGATGCTGGTTCCTG 386
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 435 ATCTTTTTTCAAATCTGAGGACATGTGCTGTACGCCAAAACTTGCGGATGCTGGTTCCTG 494
Query 387 CAAACTTGGCGAGGTTATGATTAGTGCAGATCCTAATGATCCTGAATGGCCTAAGCGGAT 446
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 CAATCTTGGAGAGGTTATGATTAGTGCAGATCCTAATGATCCTGAATGGCCTAAGCGGAT 554
Query 447 TCCCACTTTTTTCAAAAGGGGTGAGGAAGAGGTAAAGATGTCTCCGGAAGCTGTGATTAT 506
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 555 TCCCACTTTTTTCAAAAGGGGTGAGGAAGAAGTGAAGATGTCTCCGGAAGCTGTCATTAT 614
Query 507 AAAGAAAACTGGATGGTACACTGTTTACTTCATGACATGTGATCCGGAATTGGATGGCAC 566
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 615 CAAGAAAACTGGATTGTACACTGTTTACTTCATGACATGTGATCCGGAATTGGATGGCGC 674
Query 567 CACAATCAGAGGAAGAACAGTTTGGAAGAACAGAG 601
||||||||||||||||||||||||||||||||||
Sbjct 675 AACAATCAGAGGAAGAACAGTTTGGAAGAACAGAG 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81676286715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5