BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471236 Length=1653 Score E Sequences producing significant alignments: (Bits) Value AT1G10980.1 | Symbols: | Lung seven transmembrane receptor fam... 1365 0.0 > AT1G10980.1 | Symbols: | Lung seven transmembrane receptor family protein | chr1:3667248-3669902 REVERSE LENGTH=1915 Length=1915 Score = 1365 bits (739), Expect = 0.0 Identities = 978/1086 (90%), Gaps = 45/1086 (4%) Strand=Plus/Plus Query 600 AGTTCTACGCCTCCATGCTTTTGGCTTATGTGGTTCTTGGCCTACTTTGGTTTCCACAAG 659 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 746 AGTTCTACGCCTCCATGCTTTTGGCTTACGTGGTTCTTGGCCTAGTTTGGTTTCCACAAG 805 Query 660 TTGCTCAGTATTGGAAGGATGGAATCCAGTTGCACGGTCATATCAGC-TGGTAATTGTAT 718 |||||||||||||||| ||||||||||||||||| ||||||||| | | ||||||| || Sbjct 806 TTGCTCAGTATTGGAAAGATGGAATCCAGTTGCATAGTCATATCAACTTTGTAATTGCAT 865 Query 719 TTACCATGGGTGAATTGGCCTTCCTGTACTTTGACTTCGCTTATCTCGACTCAGCTGGTA 778 ||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| Sbjct 866 TTACCATGGGTGAATTGGCCTTCCTCTACCTTGACTTCGTTTATCTCGACTCAGCTGGTA 925 Query 779 CAAGTCCTATGGAGGTTACAGTATGGGCAATAACCCTTTCTTCCATGAGGAAGGCACTCT 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 926 CAAGTCCTATGGAGGTTACAGTATGGGCAATAACCCTTTCTTCCATGAGGAAGGCACTCT 985 Query 839 CCCGGCTTCTACTGTTGGTCATATCTTCAGGCTATGGGATAGTGAGACCTACCCTTGGTG 898 ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| Sbjct 986 CCCGGCTTCTACTGTTGGTCATATCTTCAGGGTTTGGGATAGTGAGACCTACCCTAGGTG 1045 Query 899 GCATAACATTGAGGATGCTTCTTATTGGTGTCCTATGCTTTGTTATAAGCGAATCTCTCG 958 |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||| Sbjct 1046 GCATAACATTGAAGATGCTTCTTATTGGTGTCTTATGCTTTGTTATAAGTGAATCCCTCG 1105 Query 959 GGTTGGCTATGCAATTTGGGAA-ATTTTCTGAAAATGGAATGACTTTCCTAATGCTCTCT 1017 |||||||||||||||||||||| || | ||||||||||||||| || | ||||||||||| Sbjct 1106 GGTTGGCTATGCAATTTGGGAACATCT-CTGAAAATGGAATGAATTACTTAATGCTCTCT 1164 Query 1018 TGGGCTATACTGGAAACTTGCTTTATCCAGTTGATTTTCAGATCCTTGTGGAAAACGCTT 1077 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1165 TGGGCTATACTGGAAACTTGCTTTATCCAGTGGATTTTCAGATCCTTGTCGAAAACGCTT 1224 Query 1078 AAGAAGCTTAAGCTGAATAAGAGGAACATTGCTAAGCTGCAGCTCTACAAGAAGTTTGCA 1137 |||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 1225 AAGAAGCTCAAGCTGAATAAGAGGAACATTACTAAGCTGCAGCTCTACAAGATGTTTGCA 1284 Query 1138 ACTATGCTTGTAACCATGATGGTGCTCAATTTTGCCTGGTTTTATGTGCAGGTATATGTC 1197 ||| ||||||||| |||| | ||||||| |||||||||| |||||||| |||||||| || Sbjct 1285 ACTGTGCTTGTAATCATGGTTGTGCTCAGTTTTGCCTGGATTTATGTGGAGGTATATCTC 1344 Query 1198 TACAACTCTCTA-AGTGAGTTTTGGCAAGTGAAGTGGAT-GATCCCAACACTTTGGTAC- 1254 |||| ||| || ||| |||||||| ||||||||||||| | ||| ||||||||||||| Sbjct 1345 TACAGCTC-CTTGAGTCAGTTTTGGAAAGTGAAGTGGATTGTTCC-AACACTTTGGTACA 1402 Query 1255 TCTCTTTCTTATGCACTATTGGTACTGATTTGCCTCTTTTGGCCTCCATCGGAAAAACCA 1314 || |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1403 TC-CTTTCTTATGCAATGTTGGTACTGATTTGCCTCTTTTGGCCTCCATCGGAAAAACCA 1461 Query 1315 ATGAGGTACCTATACGTAGCTGACATGGTGGAAGAGGCTGAAGAAGA---TGATCTCTCC 1371 |||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||| Sbjct 1462 ATGAGGTACCTATACGTAGCTGACATGGAGGAAGAGACTGAAGAAGAAGATGATCTCTCC 1521 Query 1372 GTTGCAGAAACCGGTATGAACGTAACAAAGGCTGAAGATGGCGATGTTGAGAGGTATGAA 1431 |||||||||||||||||||| ||||||||||||| | ||| | | ||| | ||| Sbjct 1522 ACTGCAGAAACCGGTATGAACGCAACAAAGGCTGAATA---CGA-GA-G-GAG-T--GAA 1572 Query 1432 AGGAAGACTCTTCTGGAAGCATTCATCATATTGCTTGGGAATTTACCAGGGGAGAGGTGA 1491 |||||||| || ||||||||||||||| |||||||||||||| |||||||||||| |||| Sbjct 1573 AGGAAGACCCTGCTGGAAGCATTCATCCTATTGCTTGGGAATATACCAGGGGAGAAGTGA 1632 Query 1492 AAC-CCCCATCTTACAAAGTTACCGTACTTTTAGCTAAAGCTGCCTGCTAGTCATCCATT 1550 ||| |||||||||||||||||||||| ||||||||| ||||||||| || |||||| || Sbjct 1633 AACTCCCCATCTTACAAAGTTACCGTCCTTTTAGCTTAAGCTGCCTACTTCTCATCCTTT 1692 Query 1551 TTCAGCTTAAGCTACTCCTAA-C--C-T---A--C----GGCTTTAAGtttttttG-AAC 1596 ||||||||||||||||||||| | | | | | |||||||||||||||| ||| Sbjct 1693 TTCAGCTTAAGCTACTCCTAATCATCCTTTTAAACCTACGGCTTTAAGTTTTTTTTTAAC 1752 Query 1597 TCCTATAATCTTCT-C--T-G-CA-G--T-AATCGGATTTTCTGTTTCATGAACTTGTTG 1647 || ||||||||||| | | | | | | |||||||||||||||||||||||||||||| Sbjct 1753 TCATATAATCTTCTGCAGTAGACTTGACTTAATCGGATTTTCTGTTTCATGAACTTGTTG 1812 Query 1648 GTAGTG 1653 |||||| Sbjct 1813 GTAGTG 1818 Score = 856 bits (463), Expect = 0.0 Identities = 539/575 (94%), Gaps = 8/575 (1%) Strand=Plus/Plus Query 34 TTGATCCACGCAGCTGACGGGTCGATTCACGAGTACAACAAC--C-AAGACTTCACCAAA 90 ||||| |||||||||||||| ||||||||||| ||||||||| | || |||||||||| Sbjct 136 TTGATTCACGCAGCTGACGGCTCGATTCACGACTACAACAACAGCGGAGGCTTCACCAAA 195 Query 91 ATCGCAAATGCTCGCTACTTTTTTGGTGGTTCCGAAGGAATCTATGGTTCTGAGTTTCTG 150 ||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 196 ATCGCCAATGCTCGCTACTTCGTTGGTGGTTCTGAAGGAATCTATGGTTCTGAGTTTCTG 255 Query 151 GATGTTCATC---CTTCTTCTGATACACCTCTGCTCAAGGGGAACTCCTTCATCAGGTTT 207 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 256 GATGTTCATCATGCTTCTTCTGATACACCTCTGCTCAAGGGAAACTCCTTCATCAGGTTT 315 Query 208 GATGATATCACTTTTGTAAGAACCAAGGAATCTGCTAGCAAGCAGAATTCCACTCAGGTG 267 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| || Sbjct 316 GATGATATCACTTTCGTAAGAACCAAGGAATCTGCTAGCAAGCAGAATTCTACTCTGG-C 374 Query 268 A-CTGCAGGCTTGGTTGAAGCGATACTGTTTGAGGTGAAGCAGCAAGACAGAGTTGGTGG 326 | ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 375 AGCTGCAGGCTTGGTGGAAGCGATACTGTTTGAGGTGAAGCAGCGAGATAGAGTTGGTGG 434 Query 327 ATCTTTTTTCAAATCTGAGGACATGTGTTGTACGCCAAAACTTGCAGATGCTGGTTCCTG 386 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 435 ATCTTTTTTCAAATCTGAGGACATGTGCTGTACGCCAAAACTTGCGGATGCTGGTTCCTG 494 Query 387 CAAACTTGGCGAGGTTATGATTAGTGCAGATCCTAATGATCCTGAATGGCCTAAGCGGAT 446 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 495 CAATCTTGGAGAGGTTATGATTAGTGCAGATCCTAATGATCCTGAATGGCCTAAGCGGAT 554 Query 447 TCCCACTTTTTTCAAAAGGGGTGAGGAAGAGGTAAAGATGTCTCCGGAAGCTGTGATTAT 506 |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| Sbjct 555 TCCCACTTTTTTCAAAAGGGGTGAGGAAGAAGTGAAGATGTCTCCGGAAGCTGTCATTAT 614 Query 507 AAAGAAAACTGGATGGTACACTGTTTACTTCATGACATGTGATCCGGAATTGGATGGCAC 566 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 615 CAAGAAAACTGGATTGTACACTGTTTACTTCATGACATGTGATCCGGAATTGGATGGCGC 674 Query 567 CACAATCAGAGGAAGAACAGTTTGGAAGAACAGAG 601 |||||||||||||||||||||||||||||||||| Sbjct 675 AACAATCAGAGGAAGAACAGTTTGGAAGAACAGAG 709 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81676286715 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5