BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471239
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11050.1 | Symbols: | Protein kinase superfamily protein | ... 2972 0.0
AT1G11055.1 | Symbols: | Encodes a defensin-like (DEFL) family... 104 3e-21
> AT1G11050.1 | Symbols: | Protein kinase superfamily protein
| chr1:3681888-3684169 FORWARD LENGTH=2282
Length=2282
Score = 2972 bits (1609), Expect = 0.0
Identities = 1800/1891 (95%), Gaps = 17/1891 (1%)
Strand=Plus/Plus
Query 1 ATGCCGAAAC-CGAttctctttcttcttctttcactcctcttctccttgtatctctcAAC 59
||||| ||| ||||||||||||||||||||||| | ||| |||||||| |||
Sbjct 5 ATGCC-TAACTCGATTCTCTTTCTTCTTCTTTCA-------T-TCC-TGTATCTCACAAA 54
Query 60 CTGCGTTGCTCAATCGCCATCACCAACTTGTCCTTTAGATTTCTCTCATGTCCTAACAAT 119
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 55 CTGCGTTGCTCAATCTCCATCACAAACTTGTCCTTTAGATTTCTCTCATGTCCTAACAAT 114
Query 120 CCCATGGAACACAACAGACTGTC-GAAGCTACGACAAATCAGCAGACAGCAAGAACAGTT 178
|||||||||||||||||| |||| ||| | |||||||||||| || |||||||||||||
Sbjct 115 CCCATGGAACACAACAGATTGTCAAAAG-TCCGACAAATCAGCCGATAGCAAGAACAGTT 173
Query 179 GTTGCCAATCTGTCTTAACTCTAATCGGAATCCCTCTAGCTCATCGTCTCAAACAAACTT 238
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GTTGCCAATCTCTTTTAACTCTAATCGGAATCCCTCTAGCTCATCGTCTCAAACAAACTT 233
Query 239 CCAATTTCCGTCTCCCAAATCTCGCTACTTCAATCTCTTGTCTCAACAACCTCCAAACGA 298
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 234 CCAATTTCCGTCTCCCAAATCTCGCTACTTCAATCTCTTGTCTCAACAATCTCCAAACGA 293
Query 299 AGCTTAATTCACTCTCTCTATCTTCGAATCTCACTTCCCTCTGTTTCGATCCGAATCAAT 358
|||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 294 AGCTTAGTTCACTCTCTCTATCTTCGAATCTCACCTCTCTCTGTTTCGATCCGAATCAGT 353
Query 359 TCGTCATCAATAACGAAACCTGTGCTGGAATCCAAACGACTCAAGATTGGGTCTCTCGTC 418
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 354 TCGTCATCAATAACGAAACCTGTGCTGGAATCCAAACGACTCAAGATTGGGTATCTCGTC 413
Query 419 TTGGTCCCTCGACGGCGCTTGATTCTGCTTGTAGCAGTGGTCTCACCGATCTCACGCGAT 478
| ||||| || ||||||||||| || || ||||||||||||||||| ||||| |||||||
Sbjct 414 TCGGTCCATCTACGGCGCTTGACTCCGCCTGTAGCAGTGGTCTCACTGATCTAACGCGAT 473
Query 479 GCGACGCTTGCGTGGCGGCTGGGTTTAGGGTTCAGAAACAGCTGATCACTTTGGACGGTA 538
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 474 GCGACGCTTGCGTGGCGGCTGGGTTTAGGGTTCAAAAACAGCTCATCACTTTGGACGGTA 533
Query 539 ATAGCTCTCACGGTCTTTATTGTTACCATTTCGCT-GTT-CTTTACGCTGCTGGTATTGT 596
|||||||||||||| |||||||||||||||| | | ||| | ||||||||||||||||||
Sbjct 534 ATAGCTCTCACGGTGTTTATTGTTACCATTTTG-TGGTTAC-TTACGCTGCTGGTATTGT 591
Query 597 TAACAAGAAAGGACCTGAGAGTGATGATGCTTTGTCTTGTCTCTTCTCGTTGAGTTTGAG 656
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 592 TAACAAGAAAGGACCTGAGAGTGATGATGCTTTGTCTTGTCTCTTCTCTTTGAGTTTGAG 651
Query 657 ATCTCCATTGAGCTCAAAAAAGAAAAGACACACGGTGGCTCTGGTTTTAGGGATAACCGG 716
||||||||||| |||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 652 ATCTCCATTGAACTCAAAGAAGAAAAGACACACGGTGGCTCTTGCTTTAGGGATAACCGG 711
Query 717 AGCTATTTTCGCGGCTCTGGTTATTGCCGGTTTGATTTGTTTGTATTTCCGGTTTGGTAA 776
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AGCTATTTTCGGGGCTCTGGTTATTGCCGGTTTGATTTGTTTGTATTTCCGGTTTGGTAA 771
Query 777 AGCTGTTAAAGGAGGAGAAGTTGGTTGGGAGGATCAAGAGTCTAGACCGAAATGGCGACC 836
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct 772 AGCTGTTAAAGGAGGAGAGGTTGGTTGGGAGGATCAAGGGTCTAGACCGAAATGGAGACC 831
Query 837 AAACACTGGCTCAATCTGGTTCAAAATCGAGGAACTAGAGAAGGCTACGAATAATTTCTC 896
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 832 AAACACTGGCTCTATCTGGTTCAAAATCGAGGAACTAGAGAAAGCTACGAATAACTTCTC 891
Query 897 GCAGAAGAATTTCATCGGTCGAGGCGGGTTTGGTTTTGTTTACAAAGGGGTTTTACCAGA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GCAGAAGAATTTCATCGGTCGAGGCGGGTTTGGTTTTGTTTACAAAGGGGTTTTACCAGA 951
Query 957 TGGATCGGTTATCGCGGTTAAGAAGGTGATAGAGTCTGAGTTTCAAGGGGATGCAGAGTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 TGGATCGGTTATCGCGGTTAAGAAGGTGATAGAGTCTGAGTTTCAAGGGGATGCAGAGTT 1011
Query 1017 TCGTAATGAGGTTGAGATCATTAGCAATTTGAAACATAGGAATCTTGTTCCGCTTAGAGG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TCGTAATGAGGTTGAGATCATTAGCAATTTGAAACATAGGAATCTTGTTCCGCTTAGAGG 1071
Query 1077 TTGTAGTATGGTGGATGATGATAGTGAGAGTCAGAGATATCTTGTTTATGATTACATGTC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TTGTAGTATGGTGGATGATGATAGTGAGAGTCAGAGATATCTTGTTTATGATTACATGTC 1131
Query 1137 TAATGGAAATCTCGATGATCACCTGTTTCCTCGGGGTGAGACTACGAAGATGCCATTGAG 1196
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1132 TAATGGAAATCTCGATGATCACTTGTTTCCTCGAGGTGAGACTACGAAGATGCCATTGAG 1191
Query 1197 CTGGCCTCAGAGAAAGAGCATCATTTTGGATGTGGCCAAAGGGTTGGCTTATTTGCATTA 1256
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1192 CTGGCCTCAGAGAAAGAGCATCATTTTGGATGTGGCTAAAGGGTTGGCTTATTTGCATTA 1251
Query 1257 CGGTGAGAAACCTGCGATTTACCACCGGGATATCAAAGGTACGAACATATTGTTAGATGT 1316
||||| |||||| || ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1252 CGGTGTGAAACCCGCTATTTATCACCGGGATATTAAAGGTACGAACATATTGTTAGATGT 1311
Query 1317 CGATATGAGAGCGAGGGTTGCGGATTTTGGTTTAGCTAAACAGAGTAGAGAAGGAGAGTC 1376
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1312 CGATATGAGAGCGAGAGTTGCGGATTTCGGTTTAGCTAAACAGAGTAGAGAAGGAGAGTC 1371
Query 1377 TCATCTCACTACCAGAGTTGCGGGAACACACGGTTATTTGGCTCCAGAGTATGCGCTCTA 1436
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1372 TCATCTCACTACCAGAGTTGCGGGAACACACGGTTACTTGGCTCCAGAGTATGCCCTCTA 1431
Query 1437 TGGTCAATTAACCGAGAAAAGCGATGTTTATAGCTTCGGGGTTGTTATATTGGAGATAAT 1496
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1432 TGGTCAATTAACCGAGAAAAGCGATGTGTATAGCTTCGGGGTTGTTATATTGGAGATCAT 1491
Query 1497 GTGTGGAAGGAAAGCTCTTGATCTTTCTACTTCCGGATCACCAAACACTTTTCTGATCAC 1556
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1492 GTGTGGAAGGAAAGCTCTTGATCTGTCTACTTCTGGATCACCAAACACTTTTCTGATCAC 1551
Query 1557 AGATTGGGCTTGGTCGTTGGTAAAAGCAGGGAAAACAGAGGAAGCTCTTGACCAGTCTTT 1616
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1552 AGATTGGGCTTGGTCATTGGTAAAAGCAGGGAAAACAGAGGAAGCTCTTGAGCAGTCTTT 1611
Query 1617 GTTGAGAGAGGAAGGCTCAGGGATGTCGAATCCGAAAGGGATAATGGAGAGATTCTTGCA 1676
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1612 GTTGAGAGAGGAAGGCTCAGGGCTCTCGAATCCGAAAGGGATAATGGAGAGATTCTTGCA 1671
Query 1677 AGTTGGGATTTTGTGTGCTCATGTATTGGTTGCTCTAAGGCCAACAATATTAGATGCATT 1736
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1672 AGTTGGGATATTGTGTGCCCATGTATTGGTTGCTTTAAGGCCAACAATATTAGATGCATT 1731
Query 1737 GAAAATGCTTGAAGGAGACATTGAGGTCCCTCCTATTCCGGATCGACCAGTCCCGCTTGC 1796
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct 1732 GAAAATGCTTGAAGGAGACATCGAGGTTCCTCCTATTCCGGACCGACCAGTCCCGCTCGC 1791
Query 1797 GCATCCTTCATACCGCATGGACGGAAACGGATTCACAATATCGCCTACGCTCAGCGGACT 1856
||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1792 GCATCCTTCGTACCGTATGGACGGAAACGGATTCACAATATCGCCTGCGCTTAGCGGACT 1851
Query 1857 ACAAATACATTCCGGAGATATGCTCCGATGA 1887
||||||||||||||||||||||||| |||||
Sbjct 1852 ACAAATACATTCCGGAGATATGCTCAGATGA 1882
Score = 161 bits (87), Expect = 2e-38
Identities = 113/125 (90%), Gaps = 3/125 (2%)
Strand=Plus/Plus
Query 1888 CAGTGGTTCACAGTGAGGCACCGTCTTGACACTATTGGTCCCCTAGCCTCAGCCACCATG 1947
|||||||||||||| ||||| ||||||||||| |||||| || |||||||||||||||
Sbjct 2132 CAGTGGTTCACAGTCCTGCACCATCTTGACACTAATGGTCCTCTCGCCTCAGCCACCATG 2191
Query 1948 TAAAATTCTGCAACCAT-CATAATTTGTGtttttttCTTCTCCGTTGCAAAATTTATATG 2006
||||||||||||||||| || ||||||||||| ||| || ||||||||||||||||||||
Sbjct 2192 TAAAATTCTGCAACCATTCA-AATTTGTGTTTATTT-TTGTCCGTTGCAAAATTTATATG 2249
Query 2007 TATAT 2011
|||||
Sbjct 2250 TATAT 2254
> AT1G11055.1 | Symbols: | Encodes a defensin-like (DEFL) family
protein. | chr1:3683919-3684095 REVERSE LENGTH=177
Length=177
Score = 104 bits (56), Expect = 3e-21
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 1888 CAGTGGTTCACAGTGAGGCACCGTCTTGACACTATTGGTCCCCTAGCCTCAGCCACCATG 1947
|||||||||||||| ||||| ||||||||||| |||||| || |||||||||||||||
Sbjct 77 CAGTGGTTCACAGTCCTGCACCATCTTGACACTAATGGTCCTCTCGCCTCAGCCACCATG 18
Query 1948 TAAAATTCTGCAACCAT 1964
|||||||||||||||||
Sbjct 17 TAAAATTCTGCAACCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99648081825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5