BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471241
Length=2028
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11070.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2451 0.0
AT1G61080.1 | Symbols: | Hydroxyproline-rich glycoprotein fami... 248 1e-64
> AT1G11070.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1);
Has 579 Blast hits to 567 proteins in 152 species:
Archae - 0; Bacteria - 68; Metazoa - 159; Fungi - 113;
Plants - 172; Viruses - 0; Other Eukaryotes - 67 (source:
NCBI BLink). | chr1:3690212-3693648 REVERSE LENGTH=2486
Length=2486
Score = 2451 bits (1327), Expect = 0.0
Identities = 1766/1966 (90%), Gaps = 78/1966 (4%)
Strand=Plus/Plus
Query 94 AAGGTGTTAGCTGCTTTAGATGGAATGATTAAGGTGATGAACGAGAGGCTCAATACGACA 153
|||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||||||||
Sbjct 568 AAGGTGTTAGCTGCATTAGATGGACTGATTAAGGGGATGAACGAGAGGCTTAATACGACA 627
Query 154 GAGATCAGCAATGTTGAAATGAAGAAAAAGGTTAGTCCGCGGAGTACTAAAACATCTAGT 213
|||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 628 GAGAACGGCAATGTGGAAATGAAGAAAAAGGTTAGTCCGCGGAGTACTAAAACATCAAAT 687
Query 214 GGCCGATCAGAATCATTGGCGAAGCAACCGATCACACCAAGAAA-GGTGCTGAGTCCACC 272
| |||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 688 GACCGATCAGAATCATTGGCGAAGCAACCGATCAGGCCAA-AAACGGTGCTGAGTCCACC 746
Query 273 GAGTAAAGT---TGGAGACTTTGCAATCTCTGTGTCAAATCTTCCTAGGAATGTGAGAAT 329
||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 747 GAGTAAAGTCCATGGAGACTTTTCAATCTCTGTGTCAAATCTTCCTAGAAATGTGAGAAT 806
Query 330 GCAAGCGCTCGTAAAGCTGAGTCCTATCGATGTAAAGCGGCTCGCTATCCAAAATTTTAG 389
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 807 GCAAGCGCTTGTAAAGCTGAGTCCTATCGATGTAAAGCGACTCGCTATCCAAAATTTTAG 866
Query 390 TCAGAAAGAAGCTCAGAGCAATAACGGTGATGGTAATGATGAGAGTGTTAAAGTGAAGCA 449
|||||||||||||| ||||||||| ||||||||| ||||||||||| | ||||||||| |
Sbjct 867 TCAGAAAGAAGCTCTGAGCAATAATGGTGATGGTGATGATGAGAGTCTCAAAGTGAAGAA 926
Query 450 GAGTGAAACAGAGAGGATTGAGAAGATGGACAAAGCAAGAGAAGCTATTCTTGAGGAACA 509
||||||||| ||| | ||||| | | | | || |||||||||||||||| ||||
Sbjct 927 GAGTGAAAC--AGA-G---GAGAA-A--G-C--A--AA-AGAAGCTATTCTTGAGAAACA 971
Query 510 AGATAGTGTGAAGAACCAGATTGATGATAAAAATTTCTCAAAAGTTTCAGTGAAATCTG- 568
|||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 972 AGATAGTGTGAAGAGTCAGATTGATGATAAAGATTGCTCAAAAGTTTCAGTGAAATCTGA 1031
Query 569 AATATTTTCCAAAATCTTTTACTCCGCCTCCT---CCACCTCCAGGGAATGCAGCAATCC 625
||| ||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1032 AATGGTTT-CAAAATCTTTTGCTCCGCCTCCTCCACCACCTCCAGGGAATGCAGCAATCC 1090
Query 626 TC-CTGCAACCACCACTTACAATGTCTGCCGGAAAAGGACT-GGCTGCTCCACTTCCTCC 683
| || ||||||||||||||||||||| | ||||| || | | |||||| ||||||||
Sbjct 1091 -CGGTGGAACCACCACTTACAATGTCTG-CTGAAAAAGAGTCGTATGCTCCGCTTCCTCC 1148
Query 684 ACCTCCCAGAAGTGCAGCACTACCACCGCCACCGCCACTTCCAATGGC--T-AG-ACTGC 739
||||||| |||| ||||||||||||||||||||||||||||||||||| | || | |
Sbjct 1149 ACCTCCCGGAAGAGCAGCACTACCACCGCCACCGCCACTTCCAATGGCTGTGAGAAAAGG 1208
Query 740 AG-CACTACCTCCACCACCGCAACTTCCAATGGTTGCCGGAAAACAGTA-CTACCACCAC 797
|| || |||| || | | || ||| | || | | | | || || || |||||||
Sbjct 1209 AGTGGCT-GCTCCGCCTCTTCCACCTCC-A-GG--GACTG-CAGCACTACCT-CCACCAC 1261
Query 798 CACCACTTCCAATGGCTGCGGGAAAAGGAGTGGCTGCTCCGCCGCTTCCACCTCCAGGGG 857
| ||||||||||||||||| |||||||||||||||||||| | | || ||||||
Sbjct 1262 CGCCACTTCCAATGGCTGCCGGAAAAGGAGTGGCTGCTCC-AC-C-ACCTCCTCCA---C 1315
Query 858 CTGCAGCACTACTGCAACCTCCAATGGAGGCTTGGGAGCCAAGAAAGCAACTAGTAAACT 917
||| | | |||| | |||||||||||||| ||||||| ||||||||||||
Sbjct 1316 CTG--G-----C-GCAA-----GA-GGAGGCTTGGGAGCGAAGAAAGTAACTAGTAAACT 1361
Query 918 GAAGAGATCAACCCATTTAGGGGCCCTCTTTAGATTCCTCAAGGCAAAATTAGAAGGGAA 977
||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||
Sbjct 1362 GAAGAGATCAACCCATTTAGGGGCCCTATTTAGATTCCTCAAGGGGAAACTAGAAGGGAA 1421
Query 978 GAATCCAGAAGTACGATCTCGTGGTGCTGGAGTAGGAAGTAAAGGCGGGA-TGGGAAGCG 1036
||||||||||||| |||||||||| ||||||| |||||||||||||| || | |||||||
Sbjct 1422 GAATCCAGAAGTAAGATCTCGTGGCGCTGGAGGAGGAAGTAAAGGCGCGACT-GGAAGCG 1480
Query 1037 CTCCAGCCAGCGGAAAGCAAGGAATGGCTGATGCTCTTGCTGAGATAACAAAGAAGTCTC 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CTCCAGCCAGCGGAAAGCAAGGAATGGCTGATGCTCTTGCTGAGATAACAAAGAAGTCTC 1540
Query 1097 CTTATTTTCAGAAGATAGAAGAGGATGTTCGAATGTATATGAGTTCAATCAATGAGCTTA 1156
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1541 CTTATTTTCAGAAGATAGAAGAGGATGTTCGAATGTATATGACTTCAATCAATGAGCTTA 1600
Query 1157 AGACAGATATTACCAAGTTCAAGAACAAGGACATCACCGAGCTTCAGAAATTTCACCATC 1216
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1601 AGACAGATATTACAAAGTTCAAGAACAAGGACATTACCGAGCTTCAAAAATTTCACCATC 1660
Query 1217 GTGTTGAATCAGTTCTTGAGAAACTAGAAGATGAAACACAGGTTCTAGCAAGGTGTGAAG 1276
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1661 GTATTGAATCAGTTCTTGAGAAACTAGAAGATGAAACACAGGTTCTAGCAAGATGTGAAG 1720
Query 1277 GATTTCCTCATAAGAAACTCGAAGCAATAAGAATGGCTGCTGCATTATACTCAAAGCTGC 1336
|||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1721 GATTCCCGCATAAGAAACTCGAAGCAATAAGAATGGCTGCTGCATTATACTCGAAGCTGG 1780
Query 1337 AGGGTATGATCAAAGAGCTAACGAACTGGAAGATAGAGTCTCCCGCCAACCAGCTTTTCG 1396
||||||||||||||||||||| ||||||||||||||||||||| || ||||| |||| ||
Sbjct 1781 AGGGTATGATCAAAGAGCTAAAGAACTGGAAGATAGAGTCTCCGGCGAACCAACTTTACG 1840
Query 1397 ACAAGACTGAACGTTACTTTGCAAAGGCAAGTCATAGGAATACTGATTTTT-CTAGTTTC 1455
| |||||||| |||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 1841 ATAAGACTGAGCGTTACTTTGCAAAGGCAAGTCATAGAAATACTGATTTTCGCTTGTTTC 1900
Query 1456 TTCGCCTTTCCtttttt-tGA---GA-------TTGAAACTCTAGACCAGATCAAAGCAG 1504
|||||||||| |||||| ||| || |||||||||||||||||||||||||||
Sbjct 1901 TTCGCCTTTCTTTTTTTCTGATCAGAAAAGAGATTGAAACTCTAGACCAGATCAAAGCAG 1960
Query 1505 AAGAGGAAAAGAAGTTCAAGAGCAATAACATCCATTTCGACTTCAATATCCTTGTTCAGA 1564
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1961 AAGAGGAAAAGAAGTTCAAGAGCAATAACATCCATTTCGACTTCAACATCCTTGTTCAGA 2020
Query 1565 TTAAGGAATTAATGGTTGATATCTCTTCGGGCTGCATGGAACTGGCGTTGAAGGAAAAGA 1624
| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 2021 TCAAGGAATTAATGGTTGATATCTCTTCAGGCTGTATGGAACTGGCATTGAAGGAAAAGA 2080
Query 1625 GAGAAGCAAAGATTGCATCGCAAACTACTGCAGAATCACGCGAGGCAAAGCCAAGCACAA 1684
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 2081 GAGAAGCAAAGATTGCATCGCAAACTACTGCAGAATCACTCGAGGCAAAGCCAAGCACGA 2140
Query 1685 AGAATAAGACTCCAGGATGGGCTAAAACGCTGTGGAGGGCATTTCATTTTGCATACAGAG 1744
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2141 AGAATAAGACTCCAGGATGGGCTAAAACGTTGTGGAGGGCATTTCATTTTGCATACAGAG 2200
Query 1745 TTTACACATTTGCTGGCGGGCACGACGATCGTGCTGATAAGCTTACAAGAGAGTTGGGTG 1804
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2201 TTTACACATTTGCTGGTGGGCACGACGATCGTGCTGATAAGCTTACAAGAGAGTTGGCTG 2260
Query 1805 AGGAGATCGAACTGATTCTTGGTAACCAGTGACTCGTGACTTATGTATCGGCTGAAAATG 1864
|||||||||| | ||||||||| ||||| ||||| ||||||||||| |||||||||||||
Sbjct 2261 AGGAGATCGAGCAGATTCTTGGAAACCAATGACTTGTGACTTATGTCTCGGCTGAAAATG 2320
Query 1865 TCACAAAAGTGTTG-AGTCTTTTTAGAAGACATTTATTAAAGAGAATAAGTGATTTAGAT 1923
||||||| || ||| ||||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct 2321 TCACAAAGGTATTGGAGTCTTTATAGAAGACAGTTATTAAAGAGAATAAGTGATTTAGGT 2380
Query 1924 -AACATGTTGTAATGTAGTTAGTTACCAAAAAGCTTTTGTACTCTGATAAGTCTTCTCAC 1982
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2381 TAACATGTTGTAATGTAGTTAGTTACCAAAAAGCTGTTGTACTCTGATAAGTCTTCTCAC 2440
Query 1983 TGAATGACTGAACCTATAGAAAAGAAAATAGCATATTAAAGTTACC 2028
|| ||||||| ||||||| ||||||||||||||||| || ||||||
Sbjct 2441 TGTATGACTGCACCTATAAAAAAGAAAATAGCATATCAAGGTTACC 2486
Score = 150 bits (81), Expect = 4e-35
Identities = 92/97 (95%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 1 ATGGTGATGCGTACGATGAAAGATCTCCATAAGCTTTGTCCTGAGATCATTGACAGCTCG 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 343 ATGGTGATGCGTACGATGAAAGATCTCCATAAGCTCTGTCCTGAGATCATTGACAGCTCC 402
Query 61 CAAATCCTC-AATATGAGACGTGCAGAAGTTGACAAG 96
||||||||| || |||||||||| |||||||||||||
Sbjct 403 CAAATCCTCGAA-ATGAGACGTGAAGAAGTTGACAAG 438
> AT1G61080.1 | Symbols: | Hydroxyproline-rich glycoprotein family
protein | chr1:22493194-22497019 REVERSE LENGTH=2724
Length=2724
Score = 248 bits (134), Expect = 1e-64
Identities = 313/397 (79%), Gaps = 22/397 (6%)
Strand=Plus/Plus
Query 1030 GGAAGCGCTCCAGCCAGCGGAAAGCAAGGAATGGCTGATGCTCTTGCTGAGATAACAAAG 1089
|||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2077 GGAAGCGCTCCAGCTGGTGGAAAGCAAGGAATGGCTGATGCTCTTGCTGAGATCACAAAG 2136
Query 1090 AAGTCTCCTTATTTTCAG-AAGATAGAAGAGGATGTT-CGAATGTATATGA-GTTCAATC 1146
|| ||| | |||||| | || ||| ||| ||| || | || ||| |||| || ||||
Sbjct 2137 AAATCTGCATATTTTTTGCAA-ATACAAGCCGATATTGCAAA-GTACATGACGT-CAATA 2193
Query 1147 AATGAGCTTAAGACAGATATTACCAAGTTCAAGAAC-AAGGACATCACCGAGCTTCAGAA 1205
|||||||| |||| || || || |||||| ||| | || ||||| || ||||||| |
Sbjct 2194 AATGAGCTGAAGATTGAGATCACTAAGTTCCAGA-CTAAAGACATGACTGAGCTTCTTAG 2252
Query 1206 ATTTCACCATCGTGTTGAATCAGTTCTTGAGAAAC-TAGA-AGATGAAACACAGGTTCTA 1263
|| |||| ||| || |||||||||||||| |||| || | ||| || ||||||||||
Sbjct 2253 CTTCCACCGTCGCGTCGAATCAGTTCTTGA-AAACCTA-ACAGACGAGTCACAGGTTCTT 2310
Query 1264 GCAAGGTGTGAAGGATTTCCTCATAAGAAACTCGAAGCAATAAGAATGGCTGCTGCATTA 1323
|| | || ||||| ||||| || ||||||||||||||||| |||||||||| ||||||
Sbjct 2311 GCCCGATGCGAAGGGTTTCCGCAGAAGAAACTCGAAGCAATGAGAATGGCTGTTGCATTG 2370
Query 1324 TACTC-AAAGCTGCAGGGTATGATCAAAGAGCTA-ACGAAC-TGGAAGATAGAGTCTCCC 1380
||| | ||| || || |||||||||| |||||| | |||| || || ||||| ||||
Sbjct 2371 TACACGAAA-CTACACGGTATGATCACCGAGCTACA-GAACATGAAA-ATAGAACCTCCT 2427
Query 1381 GCCAACCAGCTT-TTCGACAAGACT-GAACGTTACTT 1415
||||||||| || || || | | |||||||||||
Sbjct 2428 TTGAACCAGCTTCTT-GATAA-AGTAGAACGTTACTT 2462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100501491090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5