BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471246
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11112.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1042 0.0
> AT1G11112.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:3712999-3713735
REVERSE LENGTH=737
Length=737
Score = 1042 bits (564), Expect = 0.0
Identities = 674/722 (93%), Gaps = 28/722 (4%)
Strand=Plus/Plus
Query 1 AAAAAGAAACAGAGTATCCGAAAATGATGTTTTAGGCACTCTGCCCAAAGTTTCTTCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 AAAAAGAAACAGAGTATCCGAAAATGATGTTTTAGGCACTCTGCCCAAAGTTTCTTCTTC 74
Query 61 TTCCTCTTCCTCTGTTATATCTCTTTCTCGTGACCCCCAATGTAAATTCCTCACACGAAT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 75 TTCCTCTTCCTCTGTTATATCTCTTTCTCGTGACCCCCTATGTAAATTCCTCACACGAAT 134
Query 121 TCAACTCCCATTTT-ATAAA-GCTGCTAACTTTTTC-TTCATTCCTCCTCCTCTCTT-CT 176
|||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct 135 TCAACTCCCATTTTTAAAAAAGCTGCTAACTTTTTCCTTCATTCCTCCTCCTCTCTTTCT 194
Query 177 TCTGCTCCAAAAAGATCAAAACTTTCTTCCATTTTCAAAAGACCCTTTGACGCTTAAATC 236
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 195 TCTGCTCCAAAAAGATCAAAACTTTCATCCATTTTCAAAAGACCCTTTTACGCTTAATTC 254
Query 237 AAGAAATTGAGTTTTCTGAGTAAAA-TGGGATTAGAGGATAGATTCGAGGCGGTGAATCA 295
||||| ||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 255 CAGAAACTGAATTTTCTGAGTAAAAATGAGATTAGAGGATAGATTCGAGGCGGTGAATCA 314
Query 296 GTACCGGAAAAAGATGTTCAGGAAGG-TGAAGGCTGCGGTgaagaagacgaagaagaaga 354
||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 315 GTACCGGAAAAAGATGTTCCGGA-GGATGAAGGCTGCGGTGAAGAAGACGAAGAAGAAGA 373
Query 355 agCAAACTATGTTTCAGTATGATCCTTGGAGTTACGCTCTAAATTTCGACGACGGAGGAT 414
|||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| |
Sbjct 374 AGCAAACTATGTTTCAGTATGATCCTTGGAGTTATGCTTTAAACTTCGACGACGGAG--T 431
Query 415 TAGAGAATCCTCAGAGATTCTCCGGCGACTGTAACTGTAAACTCCACAAAATCACTTTGA 474
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 432 -AGAGAATCCTCAGAGATTCTCCGGCGACTGTAACTGTAAACTCCACAGAATCACTTTGA 490
Query 475 TTTATGTTGTTTCTGTCAAATTTTGACCATGTCAAATCTCTTTCTTTCTCTTATTTGTTT 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 491 TTTATGTTGTTTCTGTCAAATTTTGACCATGTCAAATCTCTTTCTTTCTCTTATTTCTTT 550
Query 535 ACAGTCACACTTGTTTCAGTTtctctccctctctctccctctTCTTTGTGTCATTTTCCA 594
||||||||||||||||||||||||||| ||||||| |||| | ||| | |||| |||
Sbjct 551 ACAGTCACACTTGTTTCAGTTTCTCTC--TCTCTCT---TCTT-TGTGT-T-ATTTACCA 602
Query 595 TCAAATTTGTTGTTTCTTTTAGAGATTTTTTCGTCAAAACTTGAATCTTCTGTTTCAATG 654
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 603 TCAAATTTGTTGTTTCTTTTAGAGATTTATTCGTCAAAACTTGAATCTTTTGTTTCAATG 662
Query 655 TACTTCAAATGGTTGAAAGAATGAAAGCAATTATCTTGACAAGTCAAT-GATCATTCTAA 713
||||||||||||||| | || |||||||||| ||||||||| | |||||||||||
Sbjct 663 TACTTCAAATGGTTG------T-AA-GCAATTATCTCGACAAGTCA-TCGATCATTCTAA 713
Query 714 TT 715
||
Sbjct 714 TT 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34661561430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5