BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471246 Length=715 Score E Sequences producing significant alignments: (Bits) Value AT1G11112.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1042 0.0 > AT1G11112.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:3712999-3713735 REVERSE LENGTH=737 Length=737 Score = 1042 bits (564), Expect = 0.0 Identities = 674/722 (93%), Gaps = 28/722 (4%) Strand=Plus/Plus Query 1 AAAAAGAAACAGAGTATCCGAAAATGATGTTTTAGGCACTCTGCCCAAAGTTTCTTCTTC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15 AAAAAGAAACAGAGTATCCGAAAATGATGTTTTAGGCACTCTGCCCAAAGTTTCTTCTTC 74 Query 61 TTCCTCTTCCTCTGTTATATCTCTTTCTCGTGACCCCCAATGTAAATTCCTCACACGAAT 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 75 TTCCTCTTCCTCTGTTATATCTCTTTCTCGTGACCCCCTATGTAAATTCCTCACACGAAT 134 Query 121 TCAACTCCCATTTT-ATAAA-GCTGCTAACTTTTTC-TTCATTCCTCCTCCTCTCTT-CT 176 |||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||| || Sbjct 135 TCAACTCCCATTTTTAAAAAAGCTGCTAACTTTTTCCTTCATTCCTCCTCCTCTCTTTCT 194 Query 177 TCTGCTCCAAAAAGATCAAAACTTTCTTCCATTTTCAAAAGACCCTTTGACGCTTAAATC 236 |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || Sbjct 195 TCTGCTCCAAAAAGATCAAAACTTTCATCCATTTTCAAAAGACCCTTTTACGCTTAATTC 254 Query 237 AAGAAATTGAGTTTTCTGAGTAAAA-TGGGATTAGAGGATAGATTCGAGGCGGTGAATCA 295 ||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 255 CAGAAACTGAATTTTCTGAGTAAAAATGAGATTAGAGGATAGATTCGAGGCGGTGAATCA 314 Query 296 GTACCGGAAAAAGATGTTCAGGAAGG-TGAAGGCTGCGGTgaagaagacgaagaagaaga 354 ||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| Sbjct 315 GTACCGGAAAAAGATGTTCCGGA-GGATGAAGGCTGCGGTGAAGAAGACGAAGAAGAAGA 373 Query 355 agCAAACTATGTTTCAGTATGATCCTTGGAGTTACGCTCTAAATTTCGACGACGGAGGAT 414 |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| | Sbjct 374 AGCAAACTATGTTTCAGTATGATCCTTGGAGTTATGCTTTAAACTTCGACGACGGAG--T 431 Query 415 TAGAGAATCCTCAGAGATTCTCCGGCGACTGTAACTGTAAACTCCACAAAATCACTTTGA 474 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 432 -AGAGAATCCTCAGAGATTCTCCGGCGACTGTAACTGTAAACTCCACAGAATCACTTTGA 490 Query 475 TTTATGTTGTTTCTGTCAAATTTTGACCATGTCAAATCTCTTTCTTTCTCTTATTTGTTT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 491 TTTATGTTGTTTCTGTCAAATTTTGACCATGTCAAATCTCTTTCTTTCTCTTATTTCTTT 550 Query 535 ACAGTCACACTTGTTTCAGTTtctctccctctctctccctctTCTTTGTGTCATTTTCCA 594 ||||||||||||||||||||||||||| ||||||| |||| | ||| | |||| ||| Sbjct 551 ACAGTCACACTTGTTTCAGTTTCTCTC--TCTCTCT---TCTT-TGTGT-T-ATTTACCA 602 Query 595 TCAAATTTGTTGTTTCTTTTAGAGATTTTTTCGTCAAAACTTGAATCTTCTGTTTCAATG 654 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 603 TCAAATTTGTTGTTTCTTTTAGAGATTTATTCGTCAAAACTTGAATCTTTTGTTTCAATG 662 Query 655 TACTTCAAATGGTTGAAAGAATGAAAGCAATTATCTTGACAAGTCAAT-GATCATTCTAA 713 ||||||||||||||| | || |||||||||| ||||||||| | ||||||||||| Sbjct 663 TACTTCAAATGGTTG------T-AA-GCAATTATCTCGACAAGTCA-TCGATCATTCTAA 713 Query 714 TT 715 || Sbjct 714 TT 715 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34661561430 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5