BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471247
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
AT1G11125.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1206 0.0
AT1G11120.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 427 1e-118
AT1G61170.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 148 9e-35
> AT1G11125.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G61170.1).
| chr1:3718783-3719711 FORWARD LENGTH=929
Length=929
Score = 1206 bits (653), Expect = 0.0
Identities = 766/821 (93%), Gaps = 6/821 (1%)
Strand=Plus/Plus
Query 324 CTCCGCCACCGCCGACAAGAAAGATGATCCTGTCTCCGGCAAGAACACCGCACCACCTCC 383
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 81 CTCCGCCACCGCCGACAAGAAAGATGATCCTGTCTCCGGCAAGAACACCGCACGGCCTCC 140
Query 384 ATCAGTTGTCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACTACATTGCTCAC 443
||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 141 ATCTGTTATCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACCACATTGCTCAC 200
Query 444 TTCCTCTAACGACAATTCGACGGTGGATAAGA-TGACGACGACAAAGATTCAAGAAGATG 502
||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||| |
Sbjct 201 TTCCTCTAACGACAATTCGACGGTGGAGAAGACT-ACGTTGACAAAGATTCAAGAAGAAG 259
Query 503 AGGAGAAGAAACCCGGAATTGTTGTCGACGTAGCTCAAGAACCGGTTTTGACCAAGCCCG 562
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 260 AGGAGAAGAAACCCGGGATTGTTGTCGACGTTGCTCAAGAACCGGTTTTGACCAAGCCCA 319
Query 563 GTACGATTGAACCCGAAAAAGGATCGGAGGTTTCGGAGATTTGTAGTTTAAGCGAGAGTT 622
|| | ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 320 GTTTGGTTGAACCGGAAAAAGGATCGGAGGTTTCGGAGAATTGTAGTTTAAGCGAGAGTT 379
Query 623 TGCTTTCGATCGTGAATGGA-TACGACGAGGGAGAAGTGCAA-CAGATGAAATCTCAGGT 680
||||||||||||||||| | |||||||||| ||||||| || |||||||||||||| ||
Sbjct 380 TGCTTTCGATCGTGAAT-AAGTACGACGAGGAAGAAGTG-AAGCAGATGAAATCTCATGT 437
Query 681 AGTGAGACAGAGATCTCCGGCGAAATCTCGGAACCGGGTCATGGTTAGTTATCCAAACCG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGTGAGACAGAGATCTCCGGCGAAATCTCGGAACCGGGTCATGGTTAGTTATCCAAACCG 497
Query 741 GAGAACCGATATGTCTCCTCGTAAGAGACACTCCGAAGAAGAAGCTGGCTCGGTAAGGCT 800
|||||||||||||||||| ||||||||| || ||||||||||||||||||||| |||||
Sbjct 498 GAGAACCGATATGTCTCCACGTAAGAGAAACAACGAAGAAGAAGCTGGCTCGGTGAGGCT 557
Query 801 GGTTCCGCCGGGTACGGGTAAGAGAGACCCGACTGAAAGATCCGAGAGAAGGTCAAGGTC 860
||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||| || ||
Sbjct 558 GGTTCCGTCGGCTACGGGTACGAGAGACTCGACTGAAAGATCCGAGAGAAGGTCTAGATC 617
Query 861 GCCGGCGATGAACAGGTCCGTCATGATGGGCCCAACTCGGAGTCAACAAAGTACGGACAG 920
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 618 GCCGGCGATGAACAGGTCCGTCATGATGGGCCCAACTCGGAGTCAACAGAGTACAGACAG 677
Query 921 TTGTGGAGCAATGAGGAGACAAAATCAGTCTCCGGGTCGGGTCAGACTTGATCCGAAGAA 980
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 678 TTGTGGAGCAATGAGGAGACAAAGCCAGTCTCCGGGTCGGGTCAGACTCAATCCGAATAT 737
Query 981 GAACGGGTCGGAACAAGATTGTAATCATCACCAGTGGCCGGGTTCTGTCGGGAATTACAA 1040
|||||||||||| ||||| |||||||||||| |||||||||||||| | || ||||||||
Sbjct 738 GAACGGGTCGGATCAAGAGTGTAATCATCACAAGTGGCCGGGTTCTATTGGAAATTACAA 797
Query 1041 TTCTACCCCTAACGACTCGTTTGAGAACCCTCTTGTTTCATTAGAGTGTTTCATCTTTCT 1100
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 798 TTCTGCCCCTAACGACTCGTTTGAGAACCCTCTTGTTTCATTAGAGTGTTTCATCTTCCT 857
Query 1101 ATGAGATAATGTATCTTATTATCGAATTGTCGCCGGAATTT 1141
||||||||||||||||||||| |||||| ||||||||||||
Sbjct 858 ATGAGATAATGTATCTTATTACCGAATTATCGCCGGAATTT 898
> AT1G11120.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G09812.1);
Has 270 Blast hits to 255 proteins in 62 species: Archae -
0; Bacteria - 2; Metazoa - 93; Fungi - 14; Plants - 126; Viruses
- 0; Other Eukaryotes - 35 (source: NCBI BLink). | chr1:3715184-3717320
FORWARD LENGTH=609
Length=609
Score = 427 bits (231), Expect = 1e-118
Identities = 255/267 (96%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 1 ATGAGAGACCTTGAGCACTTAAAGACTAACCTGAATCATCCATGGCCACCTATCGGAGCT 60
|||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||||
Sbjct 46 ATGAGAGACCTTGAGCACTTAAAGACGAACCTCAACCATCAATGGCCACCTATCGGAGCT 105
Query 61 CCGATGAATCTCCGGCGAGAAGAGCCATGGAAATCTCAATTCGACGACTCAGTTAACGCT 120
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 106 CCGATGAATCTCCGGCGAGAAGAGCCGTGGAAATCTCAGTTCGATGACTCAGTTAACGCT 165
Query 121 GTCTCCTTTGGATTCGTTGCTACAGCTATTCTCATCTCTATGTTCCTCGTCATGGCTATC 180
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 166 GTCTCCTTTGGATTCGTCGCAACGGCTATTCTCATCTCTATGTTCCTCGTCATGGCTATC 225
Query 181 TTCGAGAGACTGATTCGGACAACCACTACTTCAACTACTAACTCAGATTCCTCTTCAAGT 240
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 TTCGAGAGACTCATTCGTACAACCACTACTTCAACTACTAACTCAGATTCCTCTTCAAGT 285
Query 241 CGGGTCCTTCCGGGTATGGATTCTCGG 267
|||||||||||||||||||||||||||
Sbjct 286 CGGGTCCTTCCGGGTATGGATTCTCGG 312
Score = 102 bits (55), Expect = 7e-21
Identities = 57/58 (98%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 266 GGATGACTGTTTACTCAAACGGGGTATCGGTATTGATGCCAGGAGATGATATCCCTAC 323
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 437 GGATGACTGTTTACTCAAACGGGGTATCTGTATTGATGCCAGGAGATGATATCCCTAC 494
> AT1G61170.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 19 plant structures; EXPRESSED DURING: 12 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G11125.1); Has 54 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0;
Plants - 34; Viruses - 1; Other Eukaryotes - 2 (source: NCBI
BLink). | chr1:22549638-22550675 FORWARD LENGTH=1038
Length=1038
Score = 148 bits (80), Expect = 9e-35
Identities = 305/407 (75%), Gaps = 42/407 (10%)
Strand=Plus/Plus
Query 389 TTGTCGATGAAGAGACAGTAGTCAAAGAAGTCTTGTCCGAAACTACATTGCTCACT--T- 445
||||||| ||||||||||||||||||||||||||||| || || || ||| ||||| |
Sbjct 154 TTGTCGAAGAAGAGACAGTAGTCAAAGAAGTCTTGTCAGAGACAACCTTGTTCACTCCTT 213
Query 446 CCTCTAA---C-GACAATTCGACGGTGGATAAGAT--GACGACGACAAAGATTCAAGAAG 499
|||||| | | || ||||||| | | |||| | || ||| ||||| | |||||
Sbjct 214 CCTCTAGTTTCCG-CACTTCGACGTTC-A-AAGACCCGGTGAAGACCAAGATCCGAGAAG 270
Query 500 ATGAGGAGAAGAAACCCGGAATTGTTGTCGACGTAGCT-CAAGAACCGGTTTTGA-CCAA 557
|||||||||| |||||||| || ||| | | ||| || || |||||||||| || |
Sbjct 271 ATGAGGAGAAAAAACCCGGT-TTCTTGAAAATG--GCTTCA-GACCCGGTTTTGATCCGA 326
Query 558 GCCCGGTACGATTGAACCCGAAAAAGGATCGGAGGTTTCGGAGATTTGTAGTTT-A---- 612
|||||| || |||| || ||| |||| || |||||||||||||||||||| || |
Sbjct 327 -CCCGGTTCGGTTGATCCTGAAGAAGGCTCTGAGGTTTCGGAGATTTGTAGCTTGAGTTT 385
Query 613 -AGCGAGAGTTTG-CTTT--CGATCGTGA--A-TGGATACGACGAGGGAGAAGTGCAACA 665
||||||||| || ||| || | |||| | ||| ||||| |||| | | ||| |
Sbjct 386 GAGCGAGAGTGTGTCTTCAACGGTTGTGATGAATGGTTACGATGAGGAACATGTG-AT-- 442
Query 666 GATGAAATCTCAGGTAGTGAGACAGAGATCTCCGGCGAAATCTCGGAACCGGGTCAT-GG 724
||||||| | ||| | | |||||||||||||||||| |||||| || ||||| ||
Sbjct 443 GATGAAA-CAGAGGAAATCT--CAGAGATCTCCGGCGAAAACTCGGACCCAGGTCACCGG 499
Query 725 T--TAGTTATCCAAACCGGAGAACCGAT-ATGTCTCCTCGTAAGAGA 768
| || |||||| | ||||||||| ||| | ||||| |||||||||
Sbjct 500 TAATAATTATCCGACCCGGAGAACTGATCAA-TCTCCACGTAAGAGA 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55973607675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5